├── .gitignore ├── LICENSE ├── README.md ├── __init__.py ├── classify_fasta.py ├── plasclass ├── __init__.py ├── data │ ├── m1000 │ ├── m10000 │ ├── m100000 │ ├── m500000 │ ├── s1000 │ ├── s10000 │ ├── s100000 │ └── s500000 ├── plasclass.py ├── plasclass_utils.py └── train.py ├── setup.py └── test ├── test.fa ├── test.gs └── test.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/README.md -------------------------------------------------------------------------------- /__init__.py: -------------------------------------------------------------------------------- 1 | name = "plasclass" 2 | -------------------------------------------------------------------------------- /classify_fasta.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/classify_fasta.py -------------------------------------------------------------------------------- /plasclass/__init__.py: -------------------------------------------------------------------------------- 1 | name = "plasclass" 2 | -------------------------------------------------------------------------------- /plasclass/data/m1000: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/data/m1000 -------------------------------------------------------------------------------- /plasclass/data/m10000: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/data/m10000 -------------------------------------------------------------------------------- /plasclass/data/m100000: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/data/m100000 -------------------------------------------------------------------------------- /plasclass/data/m500000: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/data/m500000 -------------------------------------------------------------------------------- /plasclass/data/s1000: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/data/s1000 -------------------------------------------------------------------------------- /plasclass/data/s10000: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/data/s10000 -------------------------------------------------------------------------------- /plasclass/data/s100000: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/data/s100000 -------------------------------------------------------------------------------- /plasclass/data/s500000: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/data/s500000 -------------------------------------------------------------------------------- /plasclass/plasclass.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/plasclass.py -------------------------------------------------------------------------------- /plasclass/plasclass_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/plasclass_utils.py -------------------------------------------------------------------------------- /plasclass/train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/plasclass/train.py -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/setup.py -------------------------------------------------------------------------------- /test/test.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/test/test.fa -------------------------------------------------------------------------------- /test/test.gs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/test/test.gs -------------------------------------------------------------------------------- /test/test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Shamir-Lab/PlasClass/HEAD/test/test.py --------------------------------------------------------------------------------