├── .DS_Store ├── .gitignore ├── LICENSE ├── README.html ├── README.md ├── code ├── EMMAX_DownStream.R ├── Gh_CRI_v2_Annotation.R ├── MakeEmmaxCov.R ├── Rplots.pdf ├── code.Rproj ├── emmax-haploheatmap.R ├── emmax-haplotype-shinyapp.R ├── emmax-haplotype.sh ├── hap2geno.R ├── run_emmax_pipeline.sh └── split_phenotype.R ├── demo ├── CRI_v2_anno.xlsx ├── Enrichmentdb.xlsx └── TBtools.Plant.KEGG.backEnd.20200724 └── www ├── Emmax-pipeline.png ├── PosDocProject.bib ├── 使用说明.html ├── 使用说明.qmd └── 使用说明_files └── libs ├── bootstrap ├── bootstrap-icons.css ├── bootstrap-icons.woff ├── bootstrap.min.css └── bootstrap.min.js ├── clipboard └── clipboard.min.js └── quarto-html ├── anchor.min.js ├── popper.min.js ├── quarto-syntax-highlighting.css ├── quarto.js ├── tippy.css └── tippy.umd.min.js /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ShawnWx2019/emmax-pipeline/HEAD/.DS_Store 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