├── .Rbuildignore ├── .covrignore ├── .gitignore ├── .travis.yml ├── CellBench.png ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── alias.R ├── any_task_errors.R ├── apply_methods.R ├── benchmark_tbl_methods.R ├── benchmark_timing_tbl_methods.R ├── cellbench_casestudy.R ├── cellbench_file.R ├── data_list.R ├── fn_arg_seq.R ├── fn_list.R ├── is_task_error.R ├── load_data.R ├── memoise.R ├── package.R ├── print.R ├── sample_sce_data.R ├── set_options.R ├── split_step.R ├── time_methods.R ├── utils.R ├── utils_check.R ├── utils_filter.R ├── utils_sampling.R └── zzz.R ├── README.md ├── codecov.yml ├── data └── sample_sce_data.rda ├── inst ├── CITATION ├── case-study │ └── CellBenchCaseStudy.html ├── extdata │ ├── 10x_sce_sample.rds │ └── celseq_sce_sample.rds └── prebuilt-doc │ ├── CreatingBenchmarks.Rmd │ ├── Examples.Rmd │ ├── ImputeBenchmark.Rmd │ ├── ParameterTesting.Rmd │ ├── ParameterTesting.pdf │ ├── UsersGuide.Rmd │ └── UsersGuide.pdf ├── man ├── CellBench-package.Rd ├── all_unique.Rd ├── any_task_errors.Rd ├── apply_methods.Rd ├── arrow_sep.Rd ├── as_pipeline_list.Rd ├── cache_method.Rd ├── cellbench_case_study.Rd ├── cellbench_file.Rd ├── check_class.Rd ├── clear_cached_datasets.Rd ├── clear_cellbench_cache.Rd ├── collapse_pipeline.Rd ├── data_list.Rd ├── filter_zero_genes.Rd ├── fn_arg_seq.Rd ├── fn_list.Rd ├── is.task_error.Rd ├── keep_high_count_cells.Rd ├── keep_high_count_genes.Rd ├── keep_high_var_genes.Rd ├── load_all_data.Rd ├── mhead.Rd ├── print.fn_arg_seq.Rd ├── print.task_error.Rd ├── sample_cells.Rd ├── sample_genes.Rd ├── sample_sce_data.Rd ├── set_cellbench_bpparam.Rd ├── set_cellbench_cache_path.Rd ├── set_cellbench_threads.Rd ├── split_step.Rd ├── strip_timing.Rd ├── summary.benchmark_tbl.Rd ├── time_methods.Rd └── unpack_timing.Rd ├── tests ├── testthat.R └── testthat │ ├── test-apply_methods.R │ ├── test-benchmark_tbl_methods.R │ ├── test-benchmark_timing_tbl_methods.R │ ├── test-cellbench_file.R │ ├── 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