├── .DS_Store ├── .Rbuildignore ├── .Rhistory ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── .DS_Store ├── data_kidney.R ├── data_simulation.R ├── fit_mp.R ├── get_info.R ├── get_var_genes.R ├── plot_G_SIGMA.R ├── plot_SIGMA.R ├── plot_all_sigmas.R ├── plot_mp.R ├── plot_singular_vectors.R └── sigma_function.R ├── README.md ├── SIGMA.Rproj ├── data ├── force_gr_kidney.rda ├── out.rda ├── ribosomal_genes.rda ├── sce_kidney.rda ├── splatO.rda └── stress_genes.rda ├── man ├── fit_mp.Rd ├── get_info.Rd ├── get_var_genes.Rd ├── out.Rd ├── paga.coord.Rd ├── plot_MP.Rd ├── plot_all_g_sigmas.Rd ├── plot_all_sigmas.Rd ├── plot_sigma.Rd ├── plot_singular_vectors.Rd ├── rb.genes.Rd ├── sce_kidney.Rd ├── sigma_funct.Rd ├── splatO.Rd └── stress.genes.Rd └── vignettes ├── .DS_Store ├── .gitignore ├── Analysis_kidney.Rmd ├── Analysis_kidney.md ├── Analysis_kidney_files └── figure-markdown_github │ ├── unnamed-chunk-10-1.png │ ├── unnamed-chunk-11-1.png │ ├── unnamed-chunk-11-2.png 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