├── .gitignore ├── README.md ├── deep_sdf ├── __init__.py ├── data.py ├── loss.py ├── lr_schedule.py ├── mesh.py ├── metrics │ ├── chamfer.py │ ├── emd.py │ ├── non_manifold.py │ └── normal_consistency.py ├── utils.py └── workspace.py ├── evaluate.py ├── examples └── splits │ ├── inhouse_liver_test.json │ ├── inhouse_liver_train.json │ ├── inhouse_lobe_lung_train.json │ ├── inhouse_lung_test.json │ ├── inhouse_lung_train.json │ ├── lobe_seg_test.json │ ├── mmwhs_test.json │ ├── mmwhs_train.json │ ├── pancreas_test.json │ └── pancreas_train.json ├── generate_meshes_correspondence.py ├── generate_meshes_topology_correspondence.py ├── generate_template_mesh.py ├── generate_training_meshes.py ├── imgs └── headline_double.png ├── networks ├── __init__.py ├── deep_diffeomorphic_flow_template_decoder.py └── module.py ├── pretrained └── pancreas_experiments │ ├── LatentCodes │ └── latest.pth │ ├── ModelParameters │ └── latest.pth │ └── specs.json ├── reconstruct_ndf.py ├── requirements.txt └── 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