├── .circleci └── config.yml ├── .gitignore ├── Applications ├── CMakeLists.txt └── SlicerApp │ ├── CMakeLists.txt │ ├── Data │ └── Input │ │ ├── CTHeadAxial.nhdr.md5 │ │ ├── CTHeadAxial.raw.gz.md5 │ │ ├── MR-head.nrrd.md5 │ │ ├── MRHeadResampled.nhdr.md5 │ │ ├── MRHeadResampled.raw.gz.md5 │ │ ├── T1.mgz.md5 │ │ ├── T1_longname.mgh.gz.md5 │ │ ├── T1_uncompressed.mgh.md5 │ │ ├── pd_z-_float_xyz.mnc.md5 │ │ └── testNANInVolume.nrrd.md5 │ ├── Main.cxx │ ├── Resources │ ├── Icons │ │ ├── Large │ │ │ └── Slicer-DesktopIcon.png │ │ ├── Medium │ │ │ └── Slicer-DesktopIcon.png │ │ ├── Small │ │ │ └── Slicer-DesktopIcon.png │ │ ├── XLarge │ │ │ └── Slicer-DesktopIcon.png │ │ └── XXLarge │ │ │ └── Slicer-DesktopIcon.png │ ├── Images │ │ ├── Slicer-Logo.png │ │ ├── Slicer-ModulePanelLogo.png │ │ └── Slicer-SplashScreen.png │ ├── Slicer.icns │ ├── Slicer.ico │ └── SlicerApp.qrc │ ├── Testing │ ├── CMakeLists.txt │ ├── Cpp │ │ ├── CMakeLists.txt │ │ ├── qSlicerAppMainWindowTest1.cxx │ │ ├── qSlicerApplicationTpyclEMSegmentIntegrationTest.cxx │ │ ├── qSlicerApplicationTpyclTest1.cxx │ │ └── qSlicerModuleFactoryManagerTest1.cxx │ └── Python │ │ ├── AtlasTests.py │ │ ├── BRAINSFitRigidRegistrationCrashIssue4139.py │ │ ├── CLIEventTest.py │ │ ├── CLISerializationTest.py │ │ ├── CMakeLists.txt │ │ ├── Charting.py │ │ ├── DCMTKPrivateDictTest.py │ │ ├── DICOMReaders.py │ │ ├── DWMRIMultishellIOTests.py │ │ ├── FiducialLayoutSwitchBug1914.py │ │ ├── JRC2013Vis.py │ │ ├── KneeAtlasTest.py │ │ ├── MRMLCreateNodeByClassWithSetReferenceCountMinusOne.py │ │ ├── MRMLCreateNodeByClassWithoutSetReferenceCount.py │ │ ├── MRMLSceneImportAndExport.py │ │ ├── MeasureStartupTimes.py │ │ ├── RSNA2012ProstateDemo.py │ │ ├── RSNAQuantTutorial.py │ │ ├── RSNAVisTutorial.py │ │ ├── Resources │ │ └── UI │ │ │ ├── ScenePerformance.ui │ │ │ └── UtilTest.ui │ │ ├── ScenePerformance.py │ │ ├── ScriptedModuleCleanupTest.py │ │ ├── ScriptedModuleCleanupTestHelperModule.py │ │ ├── ScriptedModuleDiscoveryTest.py │ │ ├── ScriptedModuleDiscoveryTest │ │ ├── ModuleA.py │ │ ├── ModuleB.py │ │ ├── ModuleC_WithoutWidget.py │ │ ├── ModuleD_WithFileDialog_WithoutWidget.py │ │ └── ModuleE_WithFileWriter_WithoutWidget.py │ │ ├── ShaderProperties.py │ │ ├── SliceLinkLogic.py │ │ ├── Slicer4Minute.py │ │ ├── SlicerAppTesting.py │ │ ├── SlicerBoundsTest.py │ │ ├── SlicerCreateRulerCrashIssue4199.py │ │ ├── SlicerMRBMultipleSaveRestoreLoopTest.py │ │ ├── SlicerMRBMultipleSaveRestoreTest.py │ │ ├── SlicerMRBSaveRestoreCheckPathsTest.py │ │ ├── SlicerOptionDisableSettingsTest.py │ │ ├── SlicerOptionIgnoreSlicerRCTest.py │ │ ├── SlicerOptionModulesToIgnoreTest.py │ │ ├── SlicerOrientationSelectorTest.py │ │ ├── SlicerRestoreSceneViewCrashIssue3445.py │ │ ├── SlicerSceneObserverTest.py │ │ ├── SlicerStartupCompletedTest.py │ │ ├── SlicerStartupCompletedTestHelperModule.py │ │ ├── SlicerTestingExitFailureTest.py │ │ ├── SlicerTestingExitSuccessTest.py │ │ ├── SlicerTransformInteractionTest1.py │ │ ├── SlicerUnitTestTest.py │ │ ├── SlicerUnitTestWithErrorsTest.py │ │ ├── StandalonePythonImportSlicerTest.py │ │ ├── TwoCLIsInARowTest.py │ │ ├── TwoCLIsInParallelTest.py │ │ ├── UtilTest.py │ │ ├── ViewControllersSliceInterpolationBug1926.py │ │ ├── WebEngine.py │ │ ├── bSlicerTestingExitSuccessTest.py │ │ ├── sceneImport2428.py │ │ └── slicerCloseCrashBug2590.py │ ├── qSlicerAppMainWindow.cxx │ ├── qSlicerAppMainWindow.h │ ├── qSlicerAppMainWindow_p.h │ └── slicer-application-properties.cmake ├── Base ├── CLI │ ├── CMakeLists.txt │ ├── SEMCommandLineLibraryWrapper.cxx.in │ ├── Testing │ │ └── itkTestMain.h │ ├── itkPluginFilterWatcher.h │ ├── itkPluginUtilities.h │ ├── vtkPluginFilterWatcher.cxx │ ├── vtkPluginFilterWatcher.h │ ├── vtkSlicerBaseCLIConfigure.h.in │ └── vtkSlicerBaseCLIExport.h ├── CMakeLists.txt ├── Logic │ ├── CMakeLists.txt │ ├── Data │ │ └── Input │ │ │ └── vol.zip.md5 │ ├── Resources │ │ ├── CMakeLists.txt │ │ ├── ColorFiles │ │ │ ├── 64Color-Nonsemantic.txt │ │ │ ├── AbdomenColors.txt │ │ │ ├── Cividis.txt │ │ │ ├── ColdToHotRainbow.txt │ │ │ ├── DarkBrightChartColors.txt │ │ │ ├── DivergingBlueRed.txt │ │ │ ├── GenericAnatomyColors.txt │ │ │ ├── GenericColors.txt │ │ │ ├── HotToColdRainbow.txt │ │ │ ├── Inferno.txt │ │ │ ├── LightPaleChartColors.txt │ │ │ ├── Magma.txt │ │ │ ├── MediumChartColors.txt │ │ │ ├── PelvisColor.txt │ │ │ ├── Plasma.txt │ │ │ ├── SPL-BrainAtlas-2009-ColorFile.txt │ │ │ ├── SPL-BrainAtlas-2012-ColorFile.txt │ │ │ ├── SPL-BrainAtlas-ColorFile.txt │ │ │ ├── Slicer3_2010_Brain_Labels.txt │ │ │ ├── Slicer3_2010_Label_Colors.txt │ │ │ └── Viridis.txt │ │ └── OrientationMarkers │ │ │ └── Human.vtp │ ├── Testing │ │ ├── CMakeLists.txt │ │ ├── vtkArchiveTest1.cxx │ │ ├── vtkDataIOManagerLogicTest1.cxx │ │ ├── vtkSlicerApplicationLogicTest1.cxx │ │ └── vtkSlicerVersionConfigureTest1.cxx │ ├── vtkDataIOManagerLogic.cxx │ ├── vtkDataIOManagerLogic.h │ ├── vtkImageFillROI.cxx │ ├── vtkImageFillROI.h │ ├── vtkImageRectangularSource.cxx │ ├── vtkImageRectangularSource.h │ ├── vtkSlicerApplicationLogic.cxx │ ├── vtkSlicerApplicationLogic.h │ ├── vtkSlicerApplicationLogicRequests.h │ ├── vtkSlicerBaseLogic.h │ ├── vtkSlicerBaseLogicConfigure.h.in │ ├── vtkSlicerBaseLogicExport.h │ ├── vtkSlicerFiducialsLogic.cxx │ ├── vtkSlicerFiducialsLogic.h │ ├── vtkSlicerGlyphSource2D.cxx │ ├── vtkSlicerGlyphSource2D.h │ ├── vtkSlicerModuleLogic.cxx │ ├── vtkSlicerModuleLogic.h │ ├── vtkSlicerScriptedLoadableModuleLogic.cxx │ ├── vtkSlicerScriptedLoadableModuleLogic.h │ ├── vtkSlicerTask.cxx │ ├── vtkSlicerTask.h │ ├── vtkSystemInformation.cxx │ ├── vtkSystemInformation.h │ ├── vtkTransformVisualizerGlyph3D.cxx │ └── vtkTransformVisualizerGlyph3D.h ├── Python │ ├── CMakeLists.txt │ ├── freesurfer.py │ ├── mrml.py │ ├── sitkUtils.py │ ├── slicer │ │ ├── ScriptedLoadableModule.py │ │ ├── __init__.py │ │ ├── cli.py │ │ ├── kits.py.in │ │ ├── logic.py │ │ ├── release │ │ │ ├── __init__.py │ │ │ ├── midasdata.py │ │ │ ├── midasdata_test.py │ │ │ └── wiki.py │ │ ├── slicerqt-with-tcl.py │ │ ├── slicerqt.py │ │ ├── tcl │ │ │ └── Slicer3Adapters.tcl │ │ ├── testing.py │ │ ├── tests │ │ │ ├── compute-checksum.txt │ │ │ ├── test_slicer_environment.py │ │ │ ├── test_slicer_mgh.py │ │ │ ├── test_slicer_minc.py │ │ │ ├── test_slicer_python_sqlite3.py │ │ │ ├── test_slicer_util_VTKObservationMixin.py │ │ │ ├── test_slicer_util_getNodes.py │ │ │ ├── test_slicer_util_save.py │ │ │ └── test_slicer_util_without_modules.py │ │ └── util.py │ ├── tests │ │ ├── test_PythonManager.py │ │ └── test_sitkUtils.py │ ├── tpycl │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── vtkSimple.tcl │ │ ├── __init__.py │ │ ├── tpycl.py │ │ └── tpycl.tcl │ ├── vtkAddon.py │ ├── vtkITK.py │ ├── vtkSegmentationCore.py │ └── vtkTeem.py ├── QTApp │ ├── CMakeLists.txt │ ├── Resources │ │ └── UI │ │ │ ├── qSlicerAboutDialog.ui │ │ │ ├── qSlicerErrorReportDialog.ui │ │ │ └── qSlicerMainWindow.ui │ ├── Testing │ │ ├── CMakeLists.txt │ │ └── Cxx │ │ │ ├── CMakeLists.txt │ │ │ ├── qSlicerAboutDialogTest1.cxx │ │ │ └── qSlicerErrorReportDialogTest1.cxx │ ├── qSlicerAboutDialog.cxx │ ├── qSlicerAboutDialog.h │ ├── qSlicerApplicationHelper.cxx │ ├── qSlicerApplicationHelper.h │ ├── qSlicerApplicationHelper.txx │ ├── qSlicerApplicationMainWrapper.cxx │ ├── qSlicerBaseQTAppPythonQtDecorators.h │ ├── qSlicerErrorReportDialog.cxx │ ├── qSlicerErrorReportDialog.h │ ├── qSlicerMainWindow.cxx │ ├── qSlicerMainWindow.h │ └── qSlicerMainWindow_p.h ├── QTCLI │ ├── CMakeLists.txt │ ├── DesignerPlugins │ │ ├── CMakeLists.txt │ │ ├── qSlicerCLIProgressBarPlugin.cxx │ │ ├── qSlicerCLIProgressBarPlugin.h │ │ ├── qSlicerQTCLIAbstractPlugin.cxx │ │ ├── qSlicerQTCLIAbstractPlugin.h │ │ ├── qSlicerQTCLIPlugins.cxx │ │ └── qSlicerQTCLIPlugins.h │ ├── Resources │ │ ├── UI │ │ │ └── qSlicerCLIModuleWidget.ui │ │ └── qSlicerBaseQTCLI.qrc │ ├── Testing │ │ ├── CLIModule4Test.cxx │ │ ├── CLIModule4Test.xml │ │ ├── CMakeLists.txt │ │ ├── PyCLIModule4Test.py │ │ ├── PyCLIModule4Test.xml │ │ ├── qSlicerCLIExecutableModuleFactoryTest1.cxx │ │ ├── qSlicerCLILoadableModuleFactoryTest1.cxx │ │ ├── qSlicerCLIModuleTest1.cxx │ │ └── qSlicerPyCLIModuleTest1.cxx │ ├── qSlicerCLIExecutableModuleFactory.cxx │ ├── qSlicerCLIExecutableModuleFactory.h │ ├── qSlicerCLILoadableModuleFactory.cxx │ ├── qSlicerCLILoadableModuleFactory.h │ ├── qSlicerCLIModule.cxx │ ├── qSlicerCLIModule.h │ ├── qSlicerCLIModuleFactoryHelper.cxx │ ├── qSlicerCLIModuleFactoryHelper.h │ ├── qSlicerCLIModuleUIHelper.cxx │ ├── qSlicerCLIModuleUIHelper.h │ ├── qSlicerCLIModuleWidget.cxx │ ├── qSlicerCLIModuleWidget.h │ ├── qSlicerCLIModuleWidgetEventPlayer.cxx │ ├── qSlicerCLIModuleWidgetEventPlayer.h │ ├── qSlicerCLIModuleWidget_p.h │ ├── qSlicerCLIProgressBar.cxx │ ├── qSlicerCLIProgressBar.h │ ├── vtkSlicerCLIModuleLogic.cxx │ └── vtkSlicerCLIModuleLogic.h ├── QTCore │ ├── CMakeLists.txt │ ├── Resources │ │ ├── Certs │ │ │ ├── README │ │ │ ├── Slicer.crt │ │ │ └── make-ca.sh │ │ ├── Files │ │ │ └── default-extension-filetype.ini │ │ ├── qSlicerBaseQTCore.qrc │ │ └── qSlicerBaseQTCoreExtra.qrc.in │ ├── Testing │ │ ├── CMakeLists.txt │ │ ├── Cxx │ │ │ ├── CMakeLists.txt │ │ │ ├── Resources │ │ │ │ └── qSlicerBaseQTCoreTesting.qrc │ │ │ ├── qSlicerAbstractCoreModuleTest1.cxx │ │ │ ├── qSlicerCoreApplicationTest1.cxx │ │ │ ├── qSlicerCoreIOManagerTest1.cxx │ │ │ ├── qSlicerCorePythonManagerWithoutApplicationTest.cxx │ │ │ ├── qSlicerExtensionsManagerModelTest.cxx │ │ │ ├── qSlicerLoadableModuleFactoryTest1.cxx │ │ │ ├── qSlicerModuleManagerTest1.cxx │ │ │ ├── qSlicerPersistentCookieJarTest.cxx │ │ │ ├── qSlicerScriptedUtilsTest1.cxx │ │ │ ├── qSlicerSslTest.cxx │ │ │ └── qSlicerUtilsTest1.cxx │ │ ├── Data │ │ │ └── Input │ │ │ │ ├── 19354-linux-amd64-CLIExtensionTemplate-svn19354-2012-02-23.json │ │ │ │ ├── 19354-linux-amd64-LoadableExtensionTemplate-svn19354-2012-02-23.json │ │ │ │ ├── 19354-linux-amd64-ScriptedLoadableExtensionTemplate-svn19354-2012-02-23.json │ │ │ │ ├── 19354-linux-amd64-SuperBuildLoadableExtensionTemplate-svn19354-2012-02-23.json │ │ │ │ ├── 19615-macosx-amd64-CLIExtensionTemplate-svn19615-2012-03-18.json │ │ │ │ ├── 19615-macosx-amd64-LoadableExtensionTemplate-svn19615-2012-03-18.json │ │ │ │ ├── 19615-macosx-amd64-ScriptedLoadableExtensionTemplate-svn19615-2012-03-18.json │ │ │ │ └── 19615-macosx-amd64-SuperBuildLoadableExtensionTemplate-svn19615-2012-03-18.json │ │ └── Python │ │ │ ├── CMakeLists.txt │ │ │ └── qSlicerModuleGenericTest.py.in │ ├── qSlicerAbstractCoreModule.cxx │ ├── qSlicerAbstractCoreModule.h │ ├── qSlicerAbstractModuleFactoryManager.cxx │ ├── qSlicerAbstractModuleFactoryManager.h │ ├── qSlicerAbstractModuleRepresentation.cxx │ ├── qSlicerAbstractModuleRepresentation.h │ ├── qSlicerBaseQTCorePythonQtDecorators.h │ ├── qSlicerCoreApplication.cxx │ ├── qSlicerCoreApplication.h │ ├── qSlicerCoreApplication_p.h │ ├── qSlicerCoreCommandOptions.cxx │ ├── qSlicerCoreCommandOptions.h │ ├── qSlicerCoreIOManager.cxx │ ├── qSlicerCoreIOManager.h │ ├── qSlicerCorePythonManager.cxx │ ├── qSlicerCorePythonManager.h │ ├── qSlicerExtensionDownloadTask.cxx │ ├── qSlicerExtensionDownloadTask.h │ ├── qSlicerExtensionsManagerModel.cxx │ ├── qSlicerExtensionsManagerModel.h │ ├── qSlicerFileReader.cxx │ ├── qSlicerFileReader.h │ ├── qSlicerFileWriter.cxx │ ├── qSlicerFileWriter.h │ ├── qSlicerIO.cxx │ ├── qSlicerIO.h │ ├── qSlicerIOOptions.cxx │ ├── qSlicerIOOptions.h │ ├── qSlicerIOOptions_p.h │ ├── qSlicerLoadableModuleFactory.cxx │ ├── qSlicerLoadableModuleFactory.h │ ├── qSlicerModuleFactoryManager.cxx │ ├── qSlicerModuleFactoryManager.h │ ├── qSlicerModuleManager.cxx │ ├── qSlicerModuleManager.h │ ├── qSlicerObject.cxx │ ├── qSlicerObject.h │ ├── qSlicerPersistentCookieJar.cxx │ ├── qSlicerPersistentCookieJar.h │ ├── qSlicerSceneBundleReader.cxx │ ├── qSlicerSceneBundleReader.h │ ├── qSlicerScriptedFileWriter.cxx │ ├── qSlicerScriptedFileWriter.h │ ├── qSlicerScriptedUtils.cxx │ ├── qSlicerScriptedUtils_p.h │ ├── qSlicerSlicer2SceneReader.cxx │ ├── qSlicerSlicer2SceneReader.h │ ├── qSlicerUtils.cxx │ ├── qSlicerUtils.h │ ├── qSlicerXcedeCatalogReader.cxx │ └── qSlicerXcedeCatalogReader.h └── QTGUI │ ├── CMakeLists.txt │ ├── DesignerPlugins │ ├── CMakeLists.txt │ ├── qSlicerDirectoryListViewPlugin.cxx │ ├── qSlicerDirectoryListViewPlugin.h │ ├── qSlicerModulePanelPlugin.cxx │ ├── qSlicerModulePanelPlugin.h │ ├── qSlicerModulesListViewPlugin.cxx │ ├── qSlicerModulesListViewPlugin.h │ ├── qSlicerMouseModeToolBarPlugin.cxx │ ├── qSlicerMouseModeToolBarPlugin.h │ ├── qSlicerQTGUIAbstractPlugin.cxx │ ├── qSlicerQTGUIAbstractPlugin.h │ ├── qSlicerQTGUIPlugins.cxx │ ├── qSlicerQTGUIPlugins.h │ ├── qSlicerWidgetPlugin.cxx │ └── qSlicerWidgetPlugin.h │ ├── Resources │ ├── Icons │ │ ├── CheckModified.png │ │ ├── CheckModifiedData.png │ │ ├── DownloadExtension.png │ │ ├── Extension.png │ │ ├── ExtensionDefaultIcon.png │ │ ├── ExtensionError.svg │ │ ├── ExtensionIncompatible.svg │ │ ├── ExtensionUpdateAvailable.svg │ │ ├── Go.png │ │ ├── Large │ │ │ ├── SlicerAddColorLUT.png │ │ │ ├── SlicerAddData.png │ │ │ ├── SlicerAddFiducialList.png │ │ │ ├── SlicerAddHierarchy.png │ │ │ ├── SlicerAddModel.png │ │ │ ├── SlicerAddScalarOverlay.png │ │ │ ├── SlicerAddScene.png │ │ │ ├── SlicerAddTransform.png │ │ │ ├── SlicerAddVolume.png │ │ │ ├── SlicerCheckForUpdates.png │ │ │ ├── SlicerConfigure.png │ │ │ ├── SlicerDownloadMRHead.png │ │ │ ├── SlicerEditCopy.png │ │ │ ├── SlicerEditCut.png │ │ │ ├── SlicerEditPaste.png │ │ │ ├── SlicerHierarchy.png │ │ │ ├── SlicerHome.png │ │ │ ├── SlicerInteractivePlotting.png │ │ │ ├── SlicerInvisible.png │ │ │ ├── SlicerLoadScene.png │ │ │ ├── SlicerLock.png │ │ │ ├── SlicerLockUnlock.png │ │ │ ├── SlicerRedo.png │ │ │ ├── SlicerUndo.png │ │ │ ├── SlicerUnlock.png │ │ │ ├── SlicerVisible.png │ │ │ └── SlicerVisibleInvisible.png │ │ ├── Medium │ │ │ ├── SlicerAddColorLUT.png │ │ │ ├── SlicerAddData.png │ │ │ ├── SlicerAddFiducialList.png │ │ │ ├── SlicerAddHierarchy.png │ │ │ ├── SlicerAddModel.png │ │ │ ├── SlicerAddScalarOverlay.png │ │ │ ├── SlicerAddScene.png │ │ │ ├── SlicerAddTransform.png │ │ │ ├── SlicerAddVolume.png │ │ │ ├── SlicerCheckForUpdates.png │ │ │ ├── SlicerCloseScene.png │ │ │ ├── SlicerConfigure.png │ │ │ ├── SlicerDataBundle.png │ │ │ ├── SlicerDatabase.png │ │ │ ├── SlicerDownloadMRHead.png │ │ │ ├── SlicerEditCopy.png │ │ │ ├── SlicerEditCut.png │ │ │ ├── SlicerEditPaste.png │ │ │ ├── SlicerHierarchy.png │ │ │ ├── SlicerHome.png │ │ │ ├── SlicerImportDICOM.png │ │ │ ├── SlicerInteractivePlotting.png │ │ │ ├── SlicerInvisible.png │ │ │ ├── SlicerLoadDICOM.png │ │ │ ├── SlicerLoadData.png │ │ │ ├── SlicerLoadScene.png │ │ │ ├── SlicerLoadVolume.png │ │ │ ├── SlicerLock.png │ │ │ ├── SlicerLockUnlock.png │ │ │ ├── SlicerRedo.png │ │ │ ├── SlicerSave.png │ │ │ ├── SlicerUndo.png │ │ │ ├── SlicerUnlock.png │ │ │ ├── SlicerVisible.png │ │ │ └── SlicerVisibleInvisible.png │ │ ├── ModuleHistory.png │ │ ├── MousePickMode.png │ │ ├── MousePlaceMode.png │ │ ├── MouseRotateMode.png │ │ ├── MouseSinglePickMode.png │ │ ├── MouseSinglePlaceMode.png │ │ ├── MouseViewTransformMode.png │ │ ├── MouseWindowLevelMode.png │ │ ├── SaveScene.png │ │ ├── Scalable │ │ │ ├── SlicerConfigure.svg │ │ │ └── SlicerDatabase.svg │ │ ├── Search.png │ │ ├── Small │ │ │ ├── SlicerAddColorLUT.png │ │ │ ├── SlicerAddData.png │ │ │ ├── SlicerAddFiducialList.png │ │ │ ├── SlicerAddHierarchy.png │ │ │ ├── SlicerAddModel.png │ │ │ ├── SlicerAddScalarOverlay.png │ │ │ ├── SlicerAddScene.png │ │ │ ├── SlicerAddTransform.png │ │ │ ├── SlicerAddVolume.png │ │ │ ├── SlicerCheckForUpdates.png │ │ │ ├── SlicerCloseScene.png │ │ │ ├── SlicerConfigure.png │ │ │ ├── SlicerDataBundle.png │ │ │ ├── SlicerEditCopy.png │ │ │ ├── SlicerEditCut.png │ │ │ ├── SlicerEditPaste.png │ │ │ ├── SlicerHierarchy.png │ │ │ ├── SlicerHome.png │ │ │ ├── SlicerInfoLeft.png │ │ │ ├── SlicerInfoRight.png │ │ │ ├── SlicerInteractivePlotting.png │ │ │ ├── SlicerInvisible.png │ │ │ ├── SlicerLoadDICOM.png │ │ │ ├── SlicerLoadData.png │ │ │ ├── SlicerLoadScene.png │ │ │ ├── SlicerLock.png │ │ │ ├── SlicerLockUnlock.png │ │ │ ├── SlicerRedo.png │ │ │ ├── SlicerSave.png │ │ │ ├── SlicerUndo.png │ │ │ ├── SlicerUnlock.png │ │ │ ├── SlicerVisible.png │ │ │ └── SlicerVisibleInvisible.png │ │ ├── TreeClose.png │ │ ├── TreeOpen.png │ │ ├── XLarge │ │ │ ├── SlicerAddColorLUT.png │ │ │ ├── SlicerAddData.png │ │ │ ├── SlicerAddFiducialList.png │ │ │ ├── SlicerAddHierarchy.png │ │ │ ├── SlicerAddModel.png │ │ │ ├── SlicerAddScalarOverlay.png │ │ │ ├── SlicerAddScene.png │ │ │ ├── SlicerAddTransform.png │ │ │ ├── SlicerAddVolume.png │ │ │ ├── SlicerCheckForUpdates.png │ │ │ ├── SlicerConfigure.png │ │ │ ├── SlicerDownloadMRHead.png │ │ │ ├── SlicerEditCopy.png │ │ │ ├── SlicerEditCut.png │ │ │ ├── SlicerEditPaste.png │ │ │ ├── SlicerHierarchy.png │ │ │ ├── SlicerHome.png │ │ │ ├── SlicerInteractivePlotting.png │ │ │ ├── SlicerInvisible.png │ │ │ ├── SlicerLoadScene.png │ │ │ ├── SlicerLock.png │ │ │ ├── SlicerLockUnlock.png │ │ │ ├── SlicerRedo.png │ │ │ ├── SlicerUndo.png │ │ │ ├── SlicerUnlock.png │ │ │ ├── SlicerVisible.png │ │ │ └── SlicerVisibleInvisible.png │ │ └── XSmall │ │ │ ├── SlicerCheckForUpdates.png │ │ │ ├── SlicerConfigure.png │ │ │ ├── SlicerDownloadMRHead.png │ │ │ ├── SlicerEditCopy.png │ │ │ ├── SlicerEditCut.png │ │ │ ├── SlicerEditPaste.png │ │ │ ├── SlicerHome.png │ │ │ ├── SlicerInteractivePlotting.png │ │ │ ├── SlicerRedo.png │ │ │ └── SlicerUndo.png │ ├── UI │ │ ├── qSlicerActionsDialog.ui │ │ ├── qSlicerDataDialog.ui │ │ ├── qSlicerExtensionsActionsWidget.ui │ │ ├── qSlicerExtensionsButtonBox.ui │ │ ├── qSlicerExtensionsManagerDialog.ui │ │ ├── qSlicerExtensionsManagerWidget.ui │ │ ├── qSlicerExtensionsToolsWidget.ui │ │ ├── qSlicerModelsDialog.ui │ │ ├── qSlicerModulePanel.ui │ │ ├── qSlicerNodeWriterOptionsWidget.ui │ │ ├── qSlicerSaveDataDialog.ui │ │ ├── qSlicerSettingsCachePanel.ui │ │ ├── qSlicerSettingsDeveloperPanel.ui │ │ ├── qSlicerSettingsExtensionsPanel.ui │ │ ├── qSlicerSettingsGeneralPanel.ui │ │ ├── qSlicerSettingsInternationalizationPanel.ui │ │ ├── qSlicerSettingsModulesPanel.ui │ │ ├── qSlicerSettingsPythonPanel.ui │ │ ├── qSlicerSettingsStylesPanel.ui │ │ ├── qSlicerSettingsUserInformationPanel.ui │ │ ├── qSlicerSettingsViewsPanel.ui │ │ └── qSlicerWebWidget.ui │ └── qSlicerBaseQTGUI.qrc │ ├── StylePlugins │ ├── CMakeLists.txt │ ├── SlicerStyle.json │ ├── qSlicerStylePlugin.cxx │ └── qSlicerStylePlugin.h │ ├── Testing │ ├── CMakeLists.txt │ ├── Cxx │ │ ├── CMakeLists.txt │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── AnnotationDistanceWithArrow.png │ │ │ │ └── AnnotationPointWithArrow.png │ │ │ └── qSlicerBaseQTGUITesting.qrc │ │ ├── qSlicerAbstractModuleTest1.cxx │ │ ├── qSlicerAbstractModuleWidgetTest1.cxx │ │ ├── qSlicerApplicationTest1.cxx │ │ ├── qSlicerDataDialogTest1.cxx │ │ ├── qSlicerDirectoryListViewTest1.cxx │ │ ├── qSlicerLayoutManagerTest1.cxx │ │ ├── qSlicerLoadableModuleWithPythonTest.cxx │ │ ├── qSlicerModuleGenericTest.cxx.in │ │ ├── qSlicerModulePanelTest1.cxx │ │ ├── qSlicerModuleWidgetGenericTest.cxx.in │ │ ├── qSlicerMouseModeToolBarTest1.cxx │ │ ├── qSlicerPythonManagerWithoutApplicationTest.cxx │ │ ├── qSlicerSaveDataDialogCustomFileWriterTest.cxx │ │ ├── qSlicerScriptedLoadableModuleTest.cxx │ │ ├── qSlicerScriptedLoadableModuleWidgetTest.cxx │ │ ├── qSlicerWidgetTest1.cxx │ │ └── qSlicerWidgetTest2.cxx │ └── Data │ │ └── Input │ │ ├── qSlicerScriptedLoadableModuleNewStyleTest.py │ │ ├── qSlicerScriptedLoadableModuleNewStyleTestWidget.py │ │ ├── qSlicerScriptedLoadableModuleSyntaxErrorTest.py │ │ ├── qSlicerScriptedLoadableModuleSyntaxErrorTestWidget.py │ │ ├── qSlicerScriptedLoadableModuleTest.py │ │ └── qSlicerScriptedLoadableModuleTestWidget.py │ ├── qSlicerAbstractModule.cxx │ ├── qSlicerAbstractModule.h │ ├── qSlicerAbstractModulePanel.cxx │ ├── qSlicerAbstractModulePanel.h │ ├── qSlicerAbstractModuleWidget.cxx │ ├── qSlicerAbstractModuleWidget.h │ ├── qSlicerActionsDialog.cxx │ ├── qSlicerActionsDialog.h │ ├── qSlicerApplication.cxx │ ├── qSlicerApplication.h │ ├── qSlicerBaseQTGUIPythonQtDecorators.h │ ├── qSlicerCommandOptions.cxx │ ├── qSlicerCommandOptions.h │ ├── qSlicerDarkStyle.cxx │ ├── qSlicerDarkStyle.h │ ├── qSlicerDataDialog.cxx │ ├── qSlicerDataDialog.h │ ├── qSlicerDataDialog_p.h │ ├── qSlicerDirectoryListView.cxx │ ├── qSlicerDirectoryListView.h │ ├── qSlicerExtensionsInstallWidget.cxx │ ├── qSlicerExtensionsInstallWidget.h │ ├── qSlicerExtensionsInstallWidget_p.h │ ├── qSlicerExtensionsManageWidget.cxx │ ├── qSlicerExtensionsManageWidget.h │ ├── qSlicerExtensionsManagerDialog.cxx │ ├── qSlicerExtensionsManagerDialog.h │ ├── qSlicerExtensionsManagerWidget.cxx │ ├── qSlicerExtensionsManagerWidget.h │ ├── qSlicerExtensionsRestoreWidget.cxx │ ├── qSlicerExtensionsRestoreWidget.h │ ├── qSlicerFileDialog.cxx │ ├── qSlicerFileDialog.h │ ├── qSlicerFileWriterOptionsWidget.cxx │ ├── qSlicerFileWriterOptionsWidget.h │ ├── qSlicerIOManager.cxx │ ├── qSlicerIOManager.h │ ├── qSlicerIOOptionsWidget.cxx │ ├── qSlicerIOOptionsWidget.h │ ├── qSlicerIconEnginePlugin.cxx │ ├── qSlicerIconEnginePlugin.h │ ├── qSlicerLayoutManager.cxx │ ├── qSlicerLayoutManager.h │ ├── qSlicerLoadableModule.cxx │ ├── qSlicerLoadableModule.h │ ├── qSlicerModelsDialog.cxx │ ├── qSlicerModelsDialog.h │ ├── qSlicerModelsDialog_p.h │ ├── qSlicerModuleFactoryFilterModel.cxx │ ├── qSlicerModuleFactoryFilterModel.h │ ├── qSlicerModulePanel.cxx │ ├── qSlicerModulePanel.h │ ├── qSlicerModuleSelectorToolBar.cxx │ ├── qSlicerModuleSelectorToolBar.h │ ├── qSlicerModulesListView.cxx │ ├── qSlicerModulesListView.h │ ├── qSlicerModulesMenu.cxx │ ├── qSlicerModulesMenu.h │ ├── qSlicerMouseModeToolBar.cxx │ ├── qSlicerMouseModeToolBar.h │ ├── qSlicerMouseModeToolBar_p.h │ ├── qSlicerNodeWriter.cxx │ ├── qSlicerNodeWriter.h │ ├── qSlicerNodeWriterOptionsWidget.cxx │ ├── qSlicerNodeWriterOptionsWidget.h │ ├── qSlicerNodeWriterOptionsWidget_p.h │ ├── qSlicerPythonManager.cxx │ ├── qSlicerPythonManager.h │ ├── qSlicerQListQVariantMapMetaType.h │ ├── qSlicerSaveDataDialog.cxx │ ├── qSlicerSaveDataDialog.h │ ├── qSlicerSaveDataDialog_p.h │ ├── qSlicerScriptedFileDialog.cxx │ ├── qSlicerScriptedFileDialog.h │ ├── qSlicerScriptedLoadableModule.cxx │ ├── qSlicerScriptedLoadableModule.h │ ├── qSlicerScriptedLoadableModuleFactory.cxx │ ├── qSlicerScriptedLoadableModuleFactory.h │ ├── qSlicerScriptedLoadableModuleWidget.cxx │ ├── qSlicerScriptedLoadableModuleWidget.h │ ├── qSlicerSettingsCachePanel.cxx │ ├── qSlicerSettingsCachePanel.h │ ├── qSlicerSettingsDeveloperPanel.cxx │ ├── qSlicerSettingsDeveloperPanel.h │ ├── qSlicerSettingsExtensionsPanel.cxx │ ├── qSlicerSettingsExtensionsPanel.h │ ├── qSlicerSettingsGeneralPanel.cxx │ ├── qSlicerSettingsGeneralPanel.h │ ├── qSlicerSettingsInternationalizationPanel.cxx │ ├── qSlicerSettingsInternationalizationPanel.h │ ├── qSlicerSettingsModulesPanel.cxx │ ├── qSlicerSettingsModulesPanel.h │ ├── qSlicerSettingsPythonPanel.cxx │ ├── qSlicerSettingsPythonPanel.h │ ├── qSlicerSettingsStylesPanel.cxx │ ├── qSlicerSettingsStylesPanel.h │ ├── qSlicerSettingsUserInformationPanel.cxx │ ├── qSlicerSettingsUserInformationPanel.h │ ├── qSlicerSettingsViewsPanel.cxx │ ├── qSlicerSettingsViewsPanel.h │ ├── qSlicerSingletonViewFactory.cxx │ ├── qSlicerSingletonViewFactory.h │ ├── qSlicerStyle.cxx │ ├── qSlicerStyle.h │ ├── qSlicerViewersToolBar.cxx │ ├── qSlicerViewersToolBar.h │ ├── qSlicerViewersToolBar_p.h │ ├── qSlicerWebDownloadWidget.cxx │ ├── qSlicerWebDownloadWidget.h │ ├── qSlicerWebPythonProxy.cxx │ ├── qSlicerWebPythonProxy.h │ ├── qSlicerWebWidget.cxx │ ├── qSlicerWebWidget.h │ ├── qSlicerWebWidget_p.h │ ├── qSlicerWidget.cxx │ └── qSlicerWidget.h ├── CMake ├── BundleUtilitiesWithRPath.cmake ├── CTestCustom.cmake.in ├── CTestPackage.cmake ├── ExternalData.cmake ├── ExternalData_config.cmake.in ├── ExternalProjectAddSource.cmake ├── ExternalProjectDependency.cmake ├── ExternalProjectDependencyForPython.cmake ├── ExternalProjectForNonCMakeProject.cmake ├── ExternalProjectGenerateProjectDescription.cmake ├── FindFontConfig.cmake ├── FindGit.cmake ├── FindPatch.cmake ├── FindVcvars.cmake ├── GetPrerequisitesWithRPath.cmake ├── ITKPlatformSpecificChecks.cmake ├── LastConfigureStep │ └── CMakeLists.txt ├── ListToString.cmake ├── MIDASAPILogin.cmake ├── MIDASAPIUploadPackage.cmake ├── MIDASCTestUploadURL.cmake ├── MacOSXBundleInfo.plist.in ├── PreventDirWithSpaces.cmake ├── PreventDirWithTooManyChars.cmake ├── PreventInBuildInstalls.cmake ├── PreventInSourceBuilds.cmake ├── SlicerApplicationOptions.cmake ├── SlicerBlockCTKAppLauncherSettings.cmake ├── SlicerBlockCXXCoverageFlags.cmake ├── SlicerBlockCXXRequiredFlags.cmake ├── SlicerBlockFindQtAndCheckVersion.cmake ├── SlicerBlockInstallCMakeProjects.cmake ├── SlicerBlockInstallDCMTKApps.cmake ├── SlicerBlockInstallDCMTKLibs.cmake ├── SlicerBlockInstallExtensionPackages.cmake ├── SlicerBlockInstallExternalPythonModules.cmake ├── SlicerBlockInstallLibArchive.cmake ├── SlicerBlockInstallOpenSSL.cmake ├── SlicerBlockInstallPython.cmake ├── SlicerBlockInstallPythonQt.cmake ├── SlicerBlockInstallQt.cmake ├── SlicerBlockInstallQtPlugins.cmake ├── SlicerBlockInstallQtTesting.cmake ├── SlicerBlockInstallTBB.cmake ├── SlicerBlockInstallTcl.cmake ├── SlicerBlockOperatingSystemNames.cmake ├── SlicerBlockPlatformCheck.cmake ├── SlicerCPack.cmake ├── SlicerCPackBundleFixup.cmake.in ├── SlicerCPackBundleVerify.cmake ├── SlicerCheckCMakeHTTPS.cmake ├── SlicerCheckModuleEnabled.cmake ├── SlicerCheckSourceTree.cmake ├── SlicerConfig.cmake.in ├── SlicerConfigVersion.cmake.in ├── SlicerConfigureDisplayableManagerObjectFactory.cmake ├── SlicerConfigureVersionHeaderTarget.cmake ├── SlicerDashboardDriverScript.cmake ├── SlicerDashboardScript.TEMPLATE.cmake ├── SlicerDirectories.cmake ├── SlicerExtensionCPack.cmake ├── SlicerExtensionCPackBundleFixup.cmake.in ├── SlicerExtensionConfig.cmake.in ├── SlicerExtensionGenerateConfig.cmake ├── SlicerExtensionTemplatesGenerator.cmake ├── SlicerFunctionAddPythonQtResources.cmake ├── SlicerFunctionCheckCompilerFlags.cmake ├── SlicerFunctionGetGccVersion.cmake ├── SlicerFunctionInstallLibrary.cmake ├── SlicerFunctionToday.cmake ├── SlicerGenerateSlicerConfig.cmake ├── SlicerInitializeBuildType.cmake ├── SlicerInitializeOSXVariables.cmake ├── SlicerInitializeReleaseType.cmake ├── SlicerInstallConfig.cmake.in ├── SlicerLinkerAsNeededFlagCheck.cmake ├── SlicerLinkerAsNeededFlagCheck │ ├── A.cxx │ ├── B.cxx │ ├── C.cxx │ └── CMakeLists.txt ├── SlicerMacroBuildApplication.cmake ├── SlicerMacroBuildBaseQtLibrary.cmake ├── SlicerMacroBuildCLI.cmake ├── SlicerMacroBuildLoadableModule.cmake ├── SlicerMacroBuildModuleLogic.cmake ├── SlicerMacroBuildModuleMRML.cmake ├── SlicerMacroBuildModuleQtLibrary.cmake ├── SlicerMacroBuildModuleVTKLibrary.cmake ├── SlicerMacroBuildModuleWidgets.cmake ├── SlicerMacroBuildScriptedModule.cmake ├── SlicerMacroConfigureGenericCxxModuleTests.cmake ├── SlicerMacroConfigureGenericPythonModuleTests.cmake ├── SlicerMacroConfigureModuleCxxTestDriver.cmake ├── SlicerMacroExtractRepositoryInfo.cmake ├── SlicerMacroGetOperatingSystemArchitectureBitness.cmake ├── SlicerMacroPythonTesting.cmake ├── SlicerMacroPythonWrapModuleVTKLibrary.cmake ├── SlicerMacroSimpleTest.cmake ├── SlicerMacroTranslation.cmake ├── SlicerPackageAndUploadTarget.cmake ├── SlicerPatch.cmake ├── SlicerReadApplicationProperties.cmake ├── SlicerValgrind.supp ├── SlicerVersion.cmake ├── Testing │ └── CMakeLists.txt ├── TopologicalSort.cmake ├── UseSlicer.cmake.in ├── UseSlicerMacros.cmake ├── itkCheckCXXAcceptsFlags.cmake ├── pre-commit ├── qSlicerExport.h.in ├── vtkMacroKitPythonWrap.cmake ├── vtkSlicerConfigure.h.in ├── vtkSlicerObjectFactory.cxx.in ├── vtkSlicerObjectFactory.h.in ├── vtkSlicerVersionConfigure.h.in └── vtkSlicerVersionConfigureInternal.h.in ├── CMakeLists.txt ├── CONTRIBUTING.md ├── COPYRIGHT.txt ├── CTestConfig.cmake ├── Extensions ├── CLIExtensionTemplate.s4ext ├── CMake │ ├── CMakeLists.txt │ ├── CTestConfig.cmake.in │ ├── MIDASAPIUploadExtension.cmake │ ├── SlicerBlockAdditionalLauncherSettings.cmake │ ├── SlicerBlockBuildPackageAndUploadExtension.cmake │ ├── SlicerBlockBuildPackageAndUploadExtensions.cmake │ ├── SlicerBlockUploadExtension.cmake │ ├── SlicerBlockUploadExtensionPrerequisites.cmake │ ├── SlicerExtensionDescriptionSpec.cmake │ ├── SlicerExtensionPackageAndUploadTarget.cmake │ ├── SlicerExtensionsDashboardDriverScript.cmake │ ├── SlicerExtensionsDashboardScript.TEMPLATE.cmake │ ├── SlicerFunctionExtractExtensionDescription.cmake │ ├── SlicerFunctionGenerateExtensionDescription.cmake │ ├── SlicerMacroGetCompilerName.cmake │ └── Testing │ │ ├── CMakeLists.txt │ │ ├── CheckGeneratedDescriptionFiles.cmake │ │ ├── SlicerExtensionBuildSystemTest.py │ │ ├── SlicerExtensionBuildSystemTestConfig.py.in │ │ ├── extension_description_with_depends.s4ext │ │ └── extension_description_without_depends.s4ext ├── EditorExtensionTemplate.s4ext ├── LoadableExtensionTemplate.s4ext ├── ScriptedLoadableExtensionTemplate.s4ext ├── ScriptedSegmentEditorEffectExtensionTemplate.s4ext ├── SuperBuildExtensionTemplate.s4ext └── Testing │ ├── CLIExtensionTemplate │ ├── CLIExtensionTemplate.png │ ├── CLIModuleTemplate │ │ ├── CLIModuleTemplate.cxx │ │ ├── CLIModuleTemplate.xml │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── CLIModuleTemplateTest.nhdr.md5 │ │ │ │ └── CLIModuleTemplateTest.raw.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ └── CTHeadAxial.raw.gz.md5 │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Cxx │ │ │ ├── CLIModuleTemplateTest.cxx │ │ │ └── CMakeLists.txt │ └── CMakeLists.txt │ ├── EditorExtensionTemplate │ ├── CMakeLists.txt │ ├── EditorEffectTemplate │ │ ├── CMakeLists.txt │ │ ├── EditorEffectTemplate.png │ │ ├── EditorEffectTemplate.py │ │ └── Testing │ │ │ └── CMakeLists.txt │ └── EditorExtensionTemplate.png │ ├── LoadableExtensionTemplate │ ├── CMakeLists.txt │ ├── LoadableExtensionTemplate.png │ └── LoadableModuleTemplate │ │ ├── CMakeLists.txt │ │ ├── Logic │ │ ├── CMakeLists.txt │ │ ├── vtkSlicerLoadableModuleTemplateLogic.cxx │ │ └── vtkSlicerLoadableModuleTemplateLogic.h │ │ ├── Resources │ │ ├── Icons │ │ │ └── LoadableModuleTemplate.png │ │ ├── UI │ │ │ ├── qSlicerLoadableModuleTemplateFooBarWidget.ui │ │ │ └── qSlicerLoadableModuleTemplateModuleWidget.ui │ │ └── qSlicerLoadableModuleTemplateModule.qrc │ │ ├── Testing │ │ ├── CMakeLists.txt │ │ └── Cxx │ │ │ └── CMakeLists.txt │ │ ├── Widgets │ │ ├── CMakeLists.txt │ │ ├── qSlicerLoadableModuleTemplateFooBarWidget.cxx │ │ └── qSlicerLoadableModuleTemplateFooBarWidget.h │ │ ├── qSlicerLoadableModuleTemplateModule.cxx │ │ ├── qSlicerLoadableModuleTemplateModule.h │ │ ├── qSlicerLoadableModuleTemplateModuleWidget.cxx │ │ └── qSlicerLoadableModuleTemplateModuleWidget.h │ ├── ScriptedLoadableExtensionTemplate │ ├── CMakeLists.txt │ ├── ScriptedLoadableExtensionTemplate.png │ └── ScriptedLoadableModuleTemplate │ │ ├── CMakeLists.txt │ │ ├── Resources │ │ └── Icons │ │ │ └── ScriptedLoadableModuleTemplate.png │ │ ├── ScriptedLoadableModuleTemplate.py │ │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt │ ├── ScriptedSegmentEditorEffectExtensionTemplate │ ├── CMakeLists.txt │ ├── ScriptedSegmentEditorEffectExtensionTemplate.png │ └── ScriptedSegmentEditorEffectModuleTemplate │ │ ├── CMakeLists.txt │ │ ├── SegmentEditorScriptedSegmentEditorEffectModuleTemplate.py │ │ ├── SegmentEditorScriptedSegmentEditorEffectModuleTemplateLib │ │ ├── SegmentEditorEffect.png │ │ ├── SegmentEditorEffect.py │ │ └── __init__.py │ │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt │ └── SuperBuildExtensionTemplate │ ├── CMakeLists.txt │ ├── CTestConfig.cmake │ ├── SuperBuild.cmake │ ├── SuperBuild │ └── External_Foo.cmake │ ├── SuperCLIModuleTemplate │ ├── CMakeLists.txt │ ├── Data │ │ ├── Baseline │ │ │ ├── SuperCLIModuleTemplateTest.nhdr.md5 │ │ │ └── SuperCLIModuleTemplateTest.raw.md5 │ │ └── Input │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ └── CTHeadAxial.raw.gz.md5 │ ├── SuperCLIModuleTemplate.cxx │ ├── SuperCLIModuleTemplate.xml │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Cxx │ │ ├── CMakeLists.txt │ │ └── SuperCLIModuleTemplateTest.cxx │ └── SuperLoadableModuleTemplate │ ├── CMakeLists.txt │ ├── Logic │ ├── CMakeLists.txt │ ├── vtkSlicerSuperLoadableModuleTemplateLogic.cxx │ └── vtkSlicerSuperLoadableModuleTemplateLogic.h │ ├── Resources │ ├── Icons │ │ └── SuperLoadableModuleTemplate.png │ ├── UI │ │ ├── qSlicerSuperLoadableModuleTemplateFooBarWidget.ui │ │ └── qSlicerSuperLoadableModuleTemplateModuleWidget.ui │ └── qSlicerSuperLoadableModuleTemplateModule.qrc │ ├── Testing │ ├── CMakeLists.txt │ └── Cxx │ │ └── CMakeLists.txt │ ├── Widgets │ ├── CMakeLists.txt │ ├── qSlicerSuperLoadableModuleTemplateFooBarWidget.cxx │ └── qSlicerSuperLoadableModuleTemplateFooBarWidget.h │ ├── qSlicerSuperLoadableModuleTemplateModule.cxx │ ├── qSlicerSuperLoadableModuleTemplateModule.h │ ├── qSlicerSuperLoadableModuleTemplateModuleWidget.cxx │ └── qSlicerSuperLoadableModuleTemplateModuleWidget.h ├── Libs ├── CMakeLists.txt ├── FreeSurfer │ ├── CMakeLists.txt │ ├── FreeSurferColorLUT20060522.txt │ ├── FreeSurferColorLUT20120827.txt │ ├── FreeSurferConfigure.h.in │ ├── Simple_surface_labels2002.txt │ ├── Testing │ │ ├── TestData │ │ │ ├── lh.dart.curv │ │ │ └── lh.dart.orig │ │ └── birn-new-big.png │ ├── vtkFSIO.cxx │ ├── vtkFSIO.h │ ├── vtkFSLookupTable.cxx │ ├── vtkFSLookupTable.h │ ├── vtkFSSurfaceAnnotationReader.cxx │ ├── vtkFSSurfaceAnnotationReader.h │ ├── vtkFSSurfaceHelper.cxx │ ├── vtkFSSurfaceHelper.h │ ├── vtkFSSurfaceLabelReader.cxx │ ├── vtkFSSurfaceLabelReader.h │ ├── vtkFSSurfaceReader.cxx │ ├── vtkFSSurfaceReader.h │ ├── vtkFSSurfaceScalarReader.cxx │ ├── vtkFSSurfaceScalarReader.h │ ├── vtkFSSurfaceWFileReader.cxx │ ├── vtkFSSurfaceWFileReader.h │ └── vtkFreeSurferExport.h ├── ITKFactoryRegistration │ ├── CMakeLists.txt │ ├── itkFactoryRegistration.cxx │ ├── itkFactoryRegistration.h │ └── itkFactoryRegistrationConfigure.h.in ├── MRML │ ├── CLI │ │ ├── CMakeLists.txt │ │ ├── vtkMRMLCLIConfigure.h.in │ │ ├── vtkMRMLCLIExport.h │ │ ├── vtkMRMLCommandLineModuleNode.cxx │ │ └── vtkMRMLCommandLineModuleNode.h │ ├── Core │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ ├── MRMLCore.dox │ │ │ └── generate_default_color_node_property_table.py │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ ├── Deformable BSpline registration Transform.tfm │ │ │ ├── L1.fcsv │ │ │ ├── NonLinearTransformScene.mrml │ │ │ ├── SlicePipeline.mrml │ │ │ ├── TestData │ │ │ │ ├── BSplineLinearCompositeTransform.h5 │ │ │ │ ├── Bspline-f-m.tfm │ │ │ │ ├── ColorTest.ctbl │ │ │ │ ├── ITKSnapSegmentation.nii.gz.md5 │ │ │ │ ├── OldSlicerSegmentation.seg.nrrd.md5 │ │ │ │ ├── PentaHexa.vtk │ │ │ │ ├── SlicerSegmentation.seg.nrrd.md5 │ │ │ │ ├── TpsTransform.h5 │ │ │ │ ├── cube.vtk │ │ │ │ ├── cube.vtk.md5 │ │ │ │ ├── cube.vtp │ │ │ │ ├── deform2x2x2_ras.nrrd │ │ │ │ ├── doubleArray.csv │ │ │ │ ├── fixed.nrrd.md5 │ │ │ │ ├── helix-DTI.nhdr.md5 │ │ │ │ ├── helix-DTI.raw.gz.md5 │ │ │ │ ├── helix-DWI.nhdr.md5 │ │ │ │ ├── helix-DWI.raw.gz.md5 │ │ │ │ ├── moving.nrrd.md5 │ │ │ │ ├── multishell-DWI-451dir.nhdr │ │ │ │ ├── multishell-DWI-451dir.raw.gz │ │ │ │ ├── sphere.vtk │ │ │ │ ├── sphere.vtp │ │ │ │ ├── table.csv │ │ │ │ ├── table.schema.csv │ │ │ │ └── vtkMRMLDoubleArrayNodeTest1_OldFile.mcsv │ │ │ ├── clipCube.mrml │ │ │ ├── cube-utf8.mrml │ │ │ ├── cube.mrml │ │ │ ├── diffusionEditor.mrml │ │ │ ├── helixGlyphs.mrml │ │ │ ├── hier_test.mrml │ │ │ ├── modelHierarchy.mrml │ │ │ ├── multi_display.mrml │ │ │ ├── name.mrml │ │ │ ├── restoreSceneSnapshotCompareView.mrml │ │ │ ├── vol.mrml │ │ │ ├── volScene.mrml │ │ │ ├── vol_and_cube.mrml │ │ │ ├── vol_and_cube_camera.mrml │ │ │ ├── volumetric_mesh.mrml │ │ │ ├── vtkCodedEntryTest1.cxx │ │ │ ├── vtkMRMLBSplineTransformNodeTest1.cxx │ │ │ ├── vtkMRMLCameraNodeTest1.cxx │ │ │ ├── vtkMRMLClipModelsNodeTest1.cxx │ │ │ ├── vtkMRMLColorNodeTest1.cxx │ │ │ ├── vtkMRMLColorTableNodeTest1.cxx │ │ │ ├── vtkMRMLColorTableStorageNodeTest1.cxx │ │ │ ├── vtkMRMLCoreTestingUtilitiesTest.cxx │ │ │ ├── vtkMRMLCrosshairNodeTest1.cxx │ │ │ ├── vtkMRMLDiffusionImageVolumeNodeTest1.cxx │ │ │ ├── vtkMRMLDiffusionTensorDisplayPropertiesNodeTest1.cxx │ │ │ ├── vtkMRMLDiffusionTensorVolumeDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLDiffusionTensorVolumeNodeTest1.cxx │ │ │ ├── vtkMRMLDiffusionTensorVolumeSliceDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLDiffusionWeightedVolumeDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLDiffusionWeightedVolumeNodeTest1.cxx │ │ │ ├── vtkMRMLDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLDisplayableHierarchyNodeDisplayPropertiesTest.cxx │ │ │ ├── vtkMRMLDisplayableHierarchyNodeTest1.cxx │ │ │ ├── vtkMRMLDisplayableHierarchyNodeTest2.cxx │ │ │ ├── vtkMRMLDisplayableHierarchyNodeTest3.cxx │ │ │ ├── vtkMRMLDisplayableNodeTest1.cxx │ │ │ ├── vtkMRMLDoubleArrayNodeTest1.cxx │ │ │ ├── vtkMRMLFiducialListNodeTest1.cxx │ │ │ ├── vtkMRMLFiducialListStorageNodeTest1.cxx │ │ │ ├── vtkMRMLFreeSurferModelOverlayStorageNodeTest1.cxx │ │ │ ├── vtkMRMLFreeSurferModelStorageNodeTest1.cxx │ │ │ ├── vtkMRMLFreeSurferProceduralColorNodeTest1.cxx │ │ │ ├── vtkMRMLGlyphableVolumeDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLGlyphableVolumeSliceDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLGridTransformNodeTest1.cxx │ │ │ ├── vtkMRMLHierarchyNodeTest1.cxx │ │ │ ├── vtkMRMLHierarchyNodeTest3.cxx │ │ │ ├── vtkMRMLInteractionNodeTest1.cxx │ │ │ ├── vtkMRMLLabelMapVolumeDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLLayoutNodeTest1.cxx │ │ │ ├── vtkMRMLLinearTransformNodeEventsTest.cxx │ │ │ ├── vtkMRMLLinearTransformNodeTest1.cxx │ │ │ ├── vtkMRMLModelDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLModelHierarchyNodeTest1.cxx │ │ │ ├── vtkMRMLModelNodeTest1.cxx │ │ │ ├── vtkMRMLModelStorageNodeTest1.cxx │ │ │ ├── vtkMRMLNRRDStorageNodeTest1.cxx │ │ │ ├── vtkMRMLNodeTest1.cxx │ │ │ ├── vtkMRMLNonlinearTransformNodeTest1.cxx │ │ │ ├── vtkMRMLPETProceduralColorNodeTest1.cxx │ │ │ ├── vtkMRMLPlotChartNodeTest1.cxx │ │ │ ├── vtkMRMLPlotSeriesNodeTest1.cxx │ │ │ ├── vtkMRMLPlotViewNodeTest1.cxx │ │ │ ├── vtkMRMLProceduralColorNodeTest1.cxx │ │ │ ├── vtkMRMLProceduralColorStorageNodeTest1.cxx │ │ │ ├── vtkMRMLROIListNodeTest1.cxx │ │ │ ├── vtkMRMLROINodeTest1.cxx │ │ │ ├── vtkMRMLScalarVolumeDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLScalarVolumeNodeTest1.cxx │ │ │ ├── vtkMRMLScalarVolumeNodeTest2.cxx │ │ │ ├── vtkMRMLSceneAddSingletonTest.cxx │ │ │ ├── vtkMRMLSceneBatchProcessTest.cxx │ │ │ ├── vtkMRMLSceneDefaultNodeTest.cxx │ │ │ ├── vtkMRMLSceneEventRecorder.cxx │ │ │ ├── vtkMRMLSceneEventRecorder.h │ │ │ ├── vtkMRMLSceneIDTest.cxx │ │ │ ├── vtkMRMLSceneImportIDConflictTest.cxx │ │ │ ├── vtkMRMLSceneImportIDModelHierarchyConflictTest.cxx │ │ │ ├── vtkMRMLSceneImportIDModelHierarchyParentIDConflictTest.cxx │ │ │ ├── vtkMRMLSceneImportTest.cxx │ │ │ ├── vtkMRMLSceneTest1.cxx │ │ │ ├── vtkMRMLSceneTest2.cxx │ │ │ ├── vtkMRMLSceneViewNodeEventsTest.cxx │ │ │ ├── vtkMRMLSceneViewNodeImportSceneTest.cxx │ │ │ ├── vtkMRMLSceneViewNodeRestoreSceneTest.cxx │ │ │ ├── vtkMRMLSceneViewNodeStoreSceneTest.cxx │ │ │ ├── vtkMRMLSceneViewNodeTest1.cxx │ │ │ ├── vtkMRMLSceneViewStorageNodeTest1.cxx │ │ │ ├── vtkMRMLScriptedModuleNodeTest1.cxx │ │ │ ├── vtkMRMLSegmentationStorageNodeTest1.cxx │ │ │ ├── vtkMRMLSelectionNodeTest1.cxx │ │ │ ├── vtkMRMLSliceCompositeNodeTest1.cxx │ │ │ ├── vtkMRMLSliceNodeTest1.cxx │ │ │ ├── vtkMRMLSnapshotClipNodeTest1.cxx │ │ │ ├── vtkMRMLStorableNodeTest1.cxx │ │ │ ├── vtkMRMLStorageNodeTest1.cxx │ │ │ ├── vtkMRMLStreamingVolumeNodeTest1.cxx │ │ │ ├── vtkMRMLTableNodeTest1.cxx │ │ │ ├── vtkMRMLTableSQLiteStorageNodeTest.cxx │ │ │ ├── vtkMRMLTableStorageNodeTest1.cxx │ │ │ ├── vtkMRMLTableViewNodeTest1.cxx │ │ │ ├── vtkMRMLTensorVolumeNodeTest1.cxx │ │ │ ├── vtkMRMLTextNodeTest1.cxx │ │ │ ├── vtkMRMLTextStorageNodeTest1.cxx │ │ │ ├── vtkMRMLTransformDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLTransformNodeTest1.cxx │ │ │ ├── vtkMRMLTransformStorageNodeTest1.cxx │ │ │ ├── vtkMRMLTransformableNodeOnNodeReferenceAddTest.cxx │ │ │ ├── vtkMRMLTransformableNodeReferenceSaveImportTest.cxx │ │ │ ├── vtkMRMLTransformableNodeTest1.cxx │ │ │ ├── vtkMRMLUnitNodeTest1.cxx │ │ │ ├── vtkMRMLVectorVolumeDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLVectorVolumeNodeTest1.cxx │ │ │ ├── vtkMRMLViewNodeTest1.cxx │ │ │ ├── vtkMRMLVolumeArchetypeStorageNodeTest1.cxx │ │ │ ├── vtkMRMLVolumeDisplayNodeTest1.cxx │ │ │ ├── vtkMRMLVolumeHeaderlessStorageNodeTest1.cxx │ │ │ ├── vtkMRMLVolumeNodeEventsTest.cxx │ │ │ ├── vtkMRMLVolumeNodeTest1.cxx │ │ │ ├── vtkMRMLdGEMRICProceduralColorNodeTest1.cxx │ │ │ ├── vtkObserverManagerTest1.cxx │ │ │ ├── vtkOrientedBSplineTransformTest1.cxx │ │ │ ├── vtkOrientedGridTransformTest1.cxx │ │ │ └── vtkThinPlateSplineTransformTest1.cxx │ │ ├── Wrapping │ │ │ └── Tcl │ │ │ │ └── hints │ │ ├── vtkCacheManager.cxx │ │ ├── vtkCacheManager.h │ │ ├── vtkCodedEntry.cxx │ │ ├── vtkCodedEntry.h │ │ ├── vtkDataFileFormatHelper.cxx │ │ ├── vtkDataFileFormatHelper.h │ │ ├── vtkDataIOManager.cxx │ │ ├── vtkDataIOManager.h │ │ ├── vtkDataTransfer.cxx │ │ ├── vtkDataTransfer.h │ │ ├── vtkEventBroker.cxx │ │ ├── vtkEventBroker.h │ │ ├── vtkITKTransformConverter.h │ │ ├── vtkITKTransformInverse.h │ │ ├── vtkMRML.h │ │ ├── vtkMRMLAbstractLayoutNode.cxx │ │ ├── vtkMRMLAbstractLayoutNode.h │ │ ├── vtkMRMLAbstractViewNode.cxx │ │ ├── vtkMRMLAbstractViewNode.h │ │ ├── vtkMRMLBSplineTransformNode.cxx │ │ ├── vtkMRMLBSplineTransformNode.h │ │ ├── vtkMRMLCameraNode.cxx │ │ ├── vtkMRMLCameraNode.h │ │ ├── vtkMRMLChartNode.cxx │ │ ├── vtkMRMLChartNode.h │ │ ├── vtkMRMLChartViewNode.cxx │ │ ├── vtkMRMLChartViewNode.h │ │ ├── vtkMRMLClipModelsNode.cxx │ │ ├── vtkMRMLClipModelsNode.h │ │ ├── vtkMRMLColorNode.cxx │ │ ├── vtkMRMLColorNode.h │ │ ├── vtkMRMLColorTableNode.cxx │ │ ├── vtkMRMLColorTableNode.h │ │ ├── vtkMRMLColorTableStorageNode.cxx │ │ ├── vtkMRMLColorTableStorageNode.h │ │ ├── vtkMRMLColors.cxx │ │ ├── vtkMRMLColors.h │ │ ├── vtkMRMLConfigure.h.in │ │ ├── vtkMRMLCoreTestingMacros.h │ │ ├── vtkMRMLCoreTestingUtilities.cxx │ │ ├── vtkMRMLCoreTestingUtilities.h │ │ ├── vtkMRMLCoreTestingUtilities.txx │ │ ├── vtkMRMLCrosshairNode.cxx │ │ ├── vtkMRMLCrosshairNode.h │ │ ├── vtkMRMLDebugLeaksMacro.h │ │ ├── vtkMRMLDiffusionImageVolumeNode.cxx │ │ ├── vtkMRMLDiffusionImageVolumeNode.h │ │ ├── vtkMRMLDiffusionTensorDisplayPropertiesNode.cxx │ │ ├── vtkMRMLDiffusionTensorDisplayPropertiesNode.h │ │ ├── vtkMRMLDiffusionTensorVolumeDisplayNode.cxx │ │ ├── vtkMRMLDiffusionTensorVolumeDisplayNode.h │ │ ├── vtkMRMLDiffusionTensorVolumeNode.cxx │ │ ├── vtkMRMLDiffusionTensorVolumeNode.h │ │ ├── vtkMRMLDiffusionTensorVolumeSliceDisplayNode.cxx │ │ ├── vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h │ │ ├── vtkMRMLDiffusionWeightedVolumeDisplayNode.cxx │ │ ├── vtkMRMLDiffusionWeightedVolumeDisplayNode.h │ │ ├── vtkMRMLDiffusionWeightedVolumeNode.cxx │ │ ├── vtkMRMLDiffusionWeightedVolumeNode.h │ │ ├── vtkMRMLDisplayNode.cxx │ │ ├── vtkMRMLDisplayNode.h │ │ ├── vtkMRMLDisplayableHierarchyNode.cxx │ │ ├── vtkMRMLDisplayableHierarchyNode.h │ │ ├── vtkMRMLDisplayableNode.cxx │ │ ├── vtkMRMLDisplayableNode.h │ │ ├── vtkMRMLDoubleArrayNode.cxx │ │ ├── vtkMRMLDoubleArrayNode.h │ │ ├── vtkMRMLDoubleArrayStorageNode.cxx │ │ ├── vtkMRMLDoubleArrayStorageNode.h │ │ ├── vtkMRMLExport.h │ │ ├── vtkMRMLFiducial.cxx │ │ ├── vtkMRMLFiducial.h │ │ ├── vtkMRMLFiducialListNode.cxx │ │ ├── vtkMRMLFiducialListNode.h │ │ ├── vtkMRMLFiducialListStorageNode.cxx │ │ ├── vtkMRMLFiducialListStorageNode.h │ │ ├── vtkMRMLFolderDisplayNode.cxx │ │ ├── vtkMRMLFolderDisplayNode.h │ │ ├── vtkMRMLFreeSurferModelOverlayStorageNode.cxx │ │ ├── vtkMRMLFreeSurferModelOverlayStorageNode.h │ │ ├── vtkMRMLFreeSurferModelStorageNode.cxx │ │ ├── vtkMRMLFreeSurferModelStorageNode.h │ │ ├── vtkMRMLFreeSurferProceduralColorNode.cxx │ │ ├── vtkMRMLFreeSurferProceduralColorNode.h │ │ ├── vtkMRMLGlyphableVolumeDisplayNode.cxx │ │ ├── vtkMRMLGlyphableVolumeDisplayNode.h │ │ ├── vtkMRMLGlyphableVolumeSliceDisplayNode.cxx │ │ ├── vtkMRMLGlyphableVolumeSliceDisplayNode.h │ │ ├── vtkMRMLGridTransformNode.cxx │ │ ├── vtkMRMLGridTransformNode.h │ │ ├── vtkMRMLHierarchyNode.cxx │ │ ├── vtkMRMLHierarchyNode.h │ │ ├── vtkMRMLHierarchyStorageNode.cxx │ │ ├── vtkMRMLHierarchyStorageNode.h │ │ ├── vtkMRMLInteractionNode.cxx │ │ ├── vtkMRMLInteractionNode.h │ │ ├── vtkMRMLLabelMapVolumeDisplayNode.cxx │ │ ├── vtkMRMLLabelMapVolumeDisplayNode.h │ │ ├── vtkMRMLLabelMapVolumeNode.cxx │ │ ├── vtkMRMLLabelMapVolumeNode.h │ │ ├── vtkMRMLLayoutNode.cxx │ │ ├── vtkMRMLLayoutNode.h │ │ ├── vtkMRMLLinearTransformNode.cxx │ │ ├── vtkMRMLLinearTransformNode.h │ │ ├── vtkMRMLLogic.cxx │ │ ├── vtkMRMLLogic.h │ │ ├── vtkMRMLMarkupsStorageNode.cxx │ │ ├── vtkMRMLMarkupsStorageNode.h │ │ ├── vtkMRMLMeasurement.cxx │ │ ├── vtkMRMLMeasurement.h │ │ ├── vtkMRMLModelDisplayNode.cxx │ │ ├── vtkMRMLModelDisplayNode.h │ │ ├── vtkMRMLModelHierarchyNode.cxx │ │ ├── vtkMRMLModelHierarchyNode.h │ │ ├── vtkMRMLModelNode.cxx │ │ ├── vtkMRMLModelNode.h │ │ ├── vtkMRMLModelStorageNode.cxx │ │ ├── vtkMRMLModelStorageNode.h │ │ ├── vtkMRMLNRRDStorageNode.cxx │ │ ├── vtkMRMLNRRDStorageNode.h │ │ ├── vtkMRMLNode.cxx │ │ ├── vtkMRMLNode.h │ │ ├── vtkMRMLNodePropertyMacros.h │ │ ├── vtkMRMLPETProceduralColorNode.cxx │ │ ├── vtkMRMLPETProceduralColorNode.h │ │ ├── vtkMRMLParser.cxx │ │ ├── vtkMRMLParser.h │ │ ├── vtkMRMLPlotChartNode.cxx │ │ ├── vtkMRMLPlotChartNode.h │ │ ├── vtkMRMLPlotSeriesNode.cxx │ │ ├── vtkMRMLPlotSeriesNode.h │ │ ├── vtkMRMLPlotViewNode.cxx │ │ ├── vtkMRMLPlotViewNode.h │ │ ├── vtkMRMLProceduralColorNode.cxx │ │ ├── vtkMRMLProceduralColorNode.h │ │ ├── vtkMRMLProceduralColorStorageNode.cxx │ │ ├── vtkMRMLProceduralColorStorageNode.h │ │ ├── vtkMRMLROIListNode.cxx │ │ ├── vtkMRMLROIListNode.h │ │ ├── vtkMRMLROINode.cxx │ │ ├── vtkMRMLROINode.h │ │ ├── vtkMRMLScalarVolumeDisplayNode.cxx │ │ ├── vtkMRMLScalarVolumeDisplayNode.h │ │ ├── vtkMRMLScalarVolumeNode.cxx │ │ ├── vtkMRMLScalarVolumeNode.h │ │ ├── vtkMRMLScene.cxx │ │ ├── vtkMRMLScene.h │ │ ├── vtkMRMLSceneViewNode.cxx │ │ ├── vtkMRMLSceneViewNode.h │ │ ├── vtkMRMLSceneViewStorageNode.cxx │ │ ├── vtkMRMLSceneViewStorageNode.h │ │ ├── vtkMRMLScriptedModuleNode.cxx │ │ ├── vtkMRMLScriptedModuleNode.h │ │ ├── vtkMRMLSegmentationDisplayNode.cxx │ │ ├── vtkMRMLSegmentationDisplayNode.h │ │ ├── vtkMRMLSegmentationNode.cxx │ │ ├── vtkMRMLSegmentationNode.h │ │ ├── vtkMRMLSegmentationStorageNode.cxx │ │ ├── vtkMRMLSegmentationStorageNode.h │ │ ├── vtkMRMLSelectionNode.cxx │ │ ├── vtkMRMLSelectionNode.h │ │ ├── vtkMRMLSliceCompositeNode.cxx │ │ ├── vtkMRMLSliceCompositeNode.h │ │ ├── vtkMRMLSliceNode.cxx │ │ ├── vtkMRMLSliceNode.h │ │ ├── vtkMRMLSnapshotClipNode.cxx │ │ ├── vtkMRMLSnapshotClipNode.h │ │ ├── vtkMRMLStorableNode.cxx │ │ ├── vtkMRMLStorableNode.h │ │ ├── vtkMRMLStorageNode.cxx │ │ ├── vtkMRMLStorageNode.h │ │ ├── vtkMRMLStreamingVolumeNode.cxx │ │ ├── vtkMRMLStreamingVolumeNode.h │ │ ├── vtkMRMLSubjectHierarchyConstants.h │ │ ├── vtkMRMLSubjectHierarchyLegacyNode.cxx │ │ ├── vtkMRMLSubjectHierarchyLegacyNode.h │ │ ├── vtkMRMLSubjectHierarchyNode.cxx │ │ ├── vtkMRMLSubjectHierarchyNode.h │ │ ├── vtkMRMLTableNode.cxx │ │ ├── vtkMRMLTableNode.h │ │ ├── vtkMRMLTableSQLiteStorageNode.cxx │ │ ├── vtkMRMLTableSQLiteStorageNode.h │ │ ├── vtkMRMLTableStorageNode.cxx │ │ ├── vtkMRMLTableStorageNode.h │ │ ├── vtkMRMLTableViewNode.cxx │ │ ├── vtkMRMLTableViewNode.h │ │ ├── vtkMRMLTensorVolumeNode.cxx │ │ ├── vtkMRMLTensorVolumeNode.h │ │ ├── vtkMRMLTextNode.cxx │ │ ├── vtkMRMLTextNode.h │ │ ├── vtkMRMLTextStorageNode.cxx │ │ ├── vtkMRMLTextStorageNode.h │ │ ├── vtkMRMLTransformDisplayNode.cxx │ │ ├── vtkMRMLTransformDisplayNode.h │ │ ├── vtkMRMLTransformNode.cxx │ │ ├── vtkMRMLTransformNode.h │ │ ├── vtkMRMLTransformStorageNode.cxx │ │ ├── vtkMRMLTransformStorageNode.h │ │ ├── vtkMRMLTransformableNode.cxx │ │ ├── vtkMRMLTransformableNode.h │ │ ├── vtkMRMLUnitNode.cxx │ │ ├── vtkMRMLUnitNode.h │ │ ├── vtkMRMLVectorVolumeDisplayNode.cxx │ │ ├── vtkMRMLVectorVolumeDisplayNode.h │ │ ├── vtkMRMLVectorVolumeNode.cxx │ │ ├── vtkMRMLVectorVolumeNode.h │ │ ├── vtkMRMLViewNode.cxx │ │ ├── vtkMRMLViewNode.h │ │ ├── vtkMRMLVolumeArchetypeStorageNode.cxx │ │ ├── vtkMRMLVolumeArchetypeStorageNode.h │ │ ├── vtkMRMLVolumeDisplayNode.cxx │ │ ├── vtkMRMLVolumeDisplayNode.h │ │ ├── vtkMRMLVolumeHeaderlessStorageNode.cxx │ │ ├── vtkMRMLVolumeHeaderlessStorageNode.h │ │ ├── vtkMRMLVolumeNode.cxx │ │ ├── vtkMRMLVolumeNode.h │ │ ├── vtkMRMLdGEMRICProceduralColorNode.cxx │ │ ├── vtkMRMLdGEMRICProceduralColorNode.h │ │ ├── vtkObservation.cxx │ │ ├── vtkObservation.h │ │ ├── vtkObserverManager.cxx │ │ ├── vtkObserverManager.h │ │ ├── vtkPermissionPrompter.cxx │ │ ├── vtkPermissionPrompter.h │ │ ├── vtkTagTable.cxx │ │ ├── vtkTagTable.h │ │ ├── vtkTagTableCollection.cxx │ │ ├── vtkTagTableCollection.h │ │ ├── vtkURIHandler.cxx │ │ ├── vtkURIHandler.h │ │ ├── vtkUserTagTable.cxx │ │ └── vtkUserTagTable.h │ ├── DisplayableManager │ │ ├── CMakeLists.txt │ │ ├── Python │ │ │ ├── CMakeLists.txt │ │ │ └── mrmlDisplayableManager │ │ │ │ └── vtkScriptedExampleDisplayableManager.py │ │ ├── Testing │ │ │ ├── Baseline │ │ │ │ ├── vtkMRMLCameraDisplayableManagerTest1.png │ │ │ │ ├── vtkMRMLModelDisplayableManagerTest.png │ │ │ │ └── vtkMRMLThreeDReformatDisplayableManagerTest1.png │ │ │ ├── CMakeLists.txt │ │ │ ├── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── vtkMRMLCameraDisplayableManagerTest1.cxx │ │ │ │ ├── vtkMRMLDisplayableManagerFactoriesTest1.cxx │ │ │ │ ├── vtkMRMLModelDisplayableManagerTest.cxx │ │ │ │ ├── vtkMRMLModelSliceDisplayableManagerTest.cxx │ │ │ │ ├── vtkMRMLSliceViewDisplayableManagerFactoryTest.cxx │ │ │ │ ├── vtkMRMLTestCustomDisplayableManager.cxx │ │ │ │ ├── vtkMRMLTestCustomDisplayableManager.h │ │ │ │ ├── vtkMRMLTestSliceViewDisplayableManager.cxx │ │ │ │ ├── vtkMRMLTestSliceViewDisplayableManager.h │ │ │ │ ├── vtkMRMLTestThreeDViewDisplayableManager.cxx │ │ │ │ ├── vtkMRMLTestThreeDViewDisplayableManager.h │ │ │ │ ├── vtkMRMLThreeDReformatDisplayableManagerTest1.cxx │ │ │ │ └── vtkMRMLThreeDViewDisplayableManagerFactoryTest1.cxx │ │ │ └── Data │ │ │ │ ├── vtkMRMLCameraDisplayableManagerTest1.mrml │ │ │ │ ├── vtkMRMLDisplayableManagerFactoriesTest1-import.mrml │ │ │ │ └── vtkMRMLDisplayableManagerFactoriesTest1-load.mrml │ │ ├── vtkMRMLAbstractDisplayableManager.cxx │ │ ├── vtkMRMLAbstractDisplayableManager.h │ │ ├── vtkMRMLAbstractSliceViewDisplayableManager.cxx │ │ ├── vtkMRMLAbstractSliceViewDisplayableManager.h │ │ ├── vtkMRMLAbstractThreeDViewDisplayableManager.cxx │ │ ├── vtkMRMLAbstractThreeDViewDisplayableManager.h │ │ ├── vtkMRMLAbstractWidget.cxx │ │ ├── vtkMRMLAbstractWidget.h │ │ ├── vtkMRMLAbstractWidgetRepresentation.cxx │ │ ├── vtkMRMLAbstractWidgetRepresentation.h │ │ ├── vtkMRMLCameraDisplayableManager.cxx │ │ ├── vtkMRMLCameraDisplayableManager.h │ │ ├── vtkMRMLCameraWidget.cxx │ │ ├── vtkMRMLCameraWidget.h │ │ ├── vtkMRMLCrosshairDisplayableManager.cxx │ │ ├── vtkMRMLCrosshairDisplayableManager.h │ │ ├── vtkMRMLCrosshairDisplayableManager3D.cxx │ │ ├── vtkMRMLCrosshairDisplayableManager3D.h │ │ ├── vtkMRMLDisplayableManagerConfigure.h.in │ │ ├── vtkMRMLDisplayableManagerExport.h │ │ ├── vtkMRMLDisplayableManagerFactory.cxx │ │ ├── vtkMRMLDisplayableManagerFactory.h │ │ ├── vtkMRMLDisplayableManagerGroup.cxx │ │ ├── vtkMRMLDisplayableManagerGroup.h │ │ ├── vtkMRMLInteractionEventData.cxx │ │ ├── vtkMRMLInteractionEventData.h │ │ ├── vtkMRMLLightBoxRendererManagerProxy.cxx │ │ ├── vtkMRMLLightBoxRendererManagerProxy.h │ │ ├── vtkMRMLModelDisplayableManager.cxx │ │ ├── vtkMRMLModelDisplayableManager.h │ │ ├── vtkMRMLModelSliceDisplayableManager.cxx │ │ ├── vtkMRMLModelSliceDisplayableManager.h │ │ ├── vtkMRMLOrientationMarkerDisplayableManager.cxx │ │ ├── vtkMRMLOrientationMarkerDisplayableManager.h │ │ ├── vtkMRMLRubberBandWidgetRepresentation.cxx │ │ ├── vtkMRMLRubberBandWidgetRepresentation.h │ │ ├── vtkMRMLRulerDisplayableManager.cxx │ │ ├── vtkMRMLRulerDisplayableManager.h │ │ ├── vtkMRMLScalarBarDisplayableManager.cxx │ │ ├── vtkMRMLScalarBarDisplayableManager.h │ │ ├── vtkMRMLScriptedDisplayableManager.cxx │ │ ├── vtkMRMLScriptedDisplayableManager.h │ │ ├── vtkMRMLSliceIntersectionRepresentation2D.cxx │ │ ├── vtkMRMLSliceIntersectionRepresentation2D.h │ │ ├── vtkMRMLSliceIntersectionWidget.cxx │ │ ├── vtkMRMLSliceIntersectionWidget.h │ │ ├── vtkMRMLSliceViewDisplayableManagerFactory.cxx │ │ ├── vtkMRMLSliceViewDisplayableManagerFactory.h │ │ ├── vtkMRMLSliceViewInteractorStyle.cxx │ │ ├── vtkMRMLSliceViewInteractorStyle.h │ │ ├── vtkMRMLThreeDReformatDisplayableManager.cxx │ │ ├── vtkMRMLThreeDReformatDisplayableManager.h │ │ ├── vtkMRMLThreeDViewDisplayableManagerFactory.cxx │ │ ├── vtkMRMLThreeDViewDisplayableManagerFactory.h │ │ ├── vtkMRMLThreeDViewInteractorStyle.cxx │ │ ├── vtkMRMLThreeDViewInteractorStyle.h │ │ ├── vtkMRMLViewDisplayableManager.cxx │ │ ├── vtkMRMLViewDisplayableManager.h │ │ ├── vtkMRMLViewInteractorStyle.cxx │ │ ├── vtkMRMLViewInteractorStyle.h │ │ ├── vtkMRMLVolumeGlyphSliceDisplayableManager.cxx │ │ ├── vtkMRMLVolumeGlyphSliceDisplayableManager.h │ │ ├── vtkMRMLWindowLevelWidget.cxx │ │ ├── vtkMRMLWindowLevelWidget.h │ │ └── vtkSingleton.h │ ├── IDImageIO │ │ ├── CMakeLists.txt │ │ ├── itkMRMLIDIOExport.h │ │ ├── itkMRMLIDIOPlugin.cxx │ │ ├── itkMRMLIDIOPlugin.h │ │ ├── itkMRMLIDImageIO.cxx │ │ ├── itkMRMLIDImageIO.h │ │ ├── itkMRMLIDImageIOConfigure.h.in │ │ ├── itkMRMLIDImageIOFactory.cxx │ │ └── itkMRMLIDImageIOFactory.h │ ├── Logic │ │ ├── CMakeLists.txt │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── vtkMRMLAbstractLogicSceneEventsTest.cxx │ │ │ │ ├── vtkMRMLApplicationLogicTest1.cxx │ │ │ │ ├── vtkMRMLColorLogicTest1.cxx │ │ │ │ ├── vtkMRMLDisplayableHierarchyLogicTest1.cxx │ │ │ │ ├── vtkMRMLLayoutLogicCompareTest.cxx │ │ │ │ ├── vtkMRMLLayoutLogicTest1.cxx │ │ │ │ ├── vtkMRMLLayoutLogicTest2.cxx │ │ │ │ ├── vtkMRMLSliceLayerLogicTest.cxx │ │ │ │ ├── vtkMRMLSliceLogicTest1.cxx │ │ │ │ ├── vtkMRMLSliceLogicTest2.cxx │ │ │ │ ├── vtkMRMLSliceLogicTest3.cxx │ │ │ │ ├── vtkMRMLSliceLogicTest4.cxx │ │ │ │ └── vtkMRMLSliceLogicTest5.cxx │ │ ├── Wrapping │ │ │ └── Tcl │ │ │ │ └── hints │ │ ├── vtkArchive.cxx │ │ ├── vtkArchive.h │ │ ├── vtkImageLabelOutline.cxx │ │ ├── vtkImageLabelOutline.h │ │ ├── vtkImageNeighborhoodFilter.cxx │ │ ├── vtkImageNeighborhoodFilter.h │ │ ├── vtkMRMLAbstractLogic.cxx │ │ ├── vtkMRMLAbstractLogic.h │ │ ├── vtkMRMLApplicationLogic.cxx │ │ ├── vtkMRMLApplicationLogic.h │ │ ├── vtkMRMLColorLogic.cxx │ │ ├── vtkMRMLColorLogic.h │ │ ├── vtkMRMLDisplayableHierarchyLogic.cxx │ │ ├── vtkMRMLDisplayableHierarchyLogic.h │ │ ├── vtkMRMLLayoutLogic.cxx │ │ ├── vtkMRMLLayoutLogic.h │ │ ├── vtkMRMLLogicConfigure.h.in │ │ ├── vtkMRMLLogicExport.h │ │ ├── vtkMRMLRemoteIOLogic.cxx │ │ ├── vtkMRMLRemoteIOLogic.h │ │ ├── vtkMRMLSliceLayerLogic.cxx │ │ ├── vtkMRMLSliceLayerLogic.h │ │ ├── vtkMRMLSliceLinkLogic.cxx │ │ ├── vtkMRMLSliceLinkLogic.h │ │ ├── vtkMRMLSliceLogic.cxx │ │ ├── vtkMRMLSliceLogic.h │ │ ├── vtkMRMLViewLinkLogic.cxx │ │ ├── vtkMRMLViewLinkLogic.h │ │ ├── vtkMRMLViewLogic.cxx │ │ └── vtkMRMLViewLogic.h │ └── Widgets │ │ ├── CMakeLists.txt │ │ ├── DesignerPlugins │ │ ├── CMakeLists.txt │ │ ├── qMRMLCaptureToolBarPlugin.cxx │ │ ├── qMRMLCaptureToolBarPlugin.h │ │ ├── qMRMLCheckableNodeComboBoxPlugin.cxx │ │ ├── qMRMLCheckableNodeComboBoxPlugin.h │ │ ├── qMRMLClipNodeWidgetPlugin.cxx │ │ ├── qMRMLClipNodeWidgetPlugin.h │ │ ├── qMRMLCollapsibleButtonPlugin.cxx │ │ ├── qMRMLCollapsibleButtonPlugin.h │ │ ├── qMRMLColorListViewPlugin.cxx │ │ ├── qMRMLColorListViewPlugin.h │ │ ├── qMRMLColorTableComboBoxPlugin.cxx │ │ ├── qMRMLColorTableComboBoxPlugin.h │ │ ├── qMRMLColorTableViewPlugin.cxx │ │ ├── qMRMLColorTableViewPlugin.h │ │ ├── qMRMLCoordinatesWidgetPlugin.cxx │ │ ├── qMRMLCoordinatesWidgetPlugin.h │ │ ├── qMRMLDisplayNodeViewComboBoxPlugin.cxx │ │ ├── qMRMLDisplayNodeViewComboBoxPlugin.h │ │ ├── qMRMLDisplayNodeWidgetPlugin.cxx │ │ ├── qMRMLDisplayNodeWidgetPlugin.h │ │ ├── qMRMLEventBrokerWidgetPlugin.cxx │ │ ├── qMRMLEventBrokerWidgetPlugin.h │ │ ├── qMRMLExpandingWebViewPlugin.cxx │ │ ├── qMRMLExpandingWebViewPlugin.h │ │ ├── qMRMLLabelComboBoxPlugin.cxx │ │ ├── qMRMLLabelComboBoxPlugin.h │ │ ├── qMRMLLayoutWidgetPlugin.cxx │ │ ├── qMRMLLayoutWidgetPlugin.h │ │ ├── qMRMLLinearTransformSliderPlugin.cxx │ │ ├── qMRMLLinearTransformSliderPlugin.h │ │ ├── qMRMLListWidgetPlugin.cxx │ │ ├── qMRMLListWidgetPlugin.h │ │ ├── qMRMLMatrixWidgetPlugin.cxx │ │ ├── qMRMLMatrixWidgetPlugin.h │ │ ├── qMRMLModelInfoWidgetPlugin.cxx │ │ ├── qMRMLModelInfoWidgetPlugin.h │ │ ├── qMRMLNavigationViewPlugin.cxx │ │ ├── qMRMLNavigationViewPlugin.h │ │ ├── qMRMLNodeAttributeTableViewPlugin.cxx │ │ ├── qMRMLNodeAttributeTableViewPlugin.h │ │ ├── qMRMLNodeAttributeTableWidgetPlugin.cxx │ │ ├── qMRMLNodeAttributeTableWidgetPlugin.h │ │ ├── qMRMLNodeComboBoxPlugin.cxx │ │ ├── qMRMLNodeComboBoxPlugin.h │ │ ├── qMRMLPlotViewControllerWidgetPlugin.cxx │ │ ├── qMRMLPlotViewControllerWidgetPlugin.h │ │ ├── qMRMLPlotWidgetPlugin.cxx │ │ ├── qMRMLPlotWidgetPlugin.h │ │ ├── qMRMLROIWidgetPlugin.cxx │ │ ├── qMRMLROIWidgetPlugin.h │ │ ├── qMRMLRangeWidgetPlugin.cxx │ │ ├── qMRMLRangeWidgetPlugin.h │ │ ├── qMRMLScalarInvariantComboBoxPlugin.cxx │ │ ├── qMRMLScalarInvariantComboBoxPlugin.h │ │ ├── qMRMLSceneFactoryWidgetPlugin.cxx │ │ ├── qMRMLSceneFactoryWidgetPlugin.h │ │ ├── qMRMLSliceControllerWidgetPlugin.cxx │ │ ├── qMRMLSliceControllerWidgetPlugin.h │ │ ├── qMRMLSliceInformationWidgetPlugin.cxx │ │ ├── qMRMLSliceInformationWidgetPlugin.h │ │ ├── qMRMLSliceWidgetPlugin.cxx │ │ ├── qMRMLSliceWidgetPlugin.h │ │ ├── qMRMLSliderWidgetPlugin.cxx │ │ ├── qMRMLSliderWidgetPlugin.h │ │ ├── qMRMLSpinBoxPlugin.cxx │ │ ├── qMRMLSpinBoxPlugin.h │ │ ├── qMRMLTableViewPlugin.cxx │ │ ├── qMRMLTableViewPlugin.h │ │ ├── qMRMLThreeDViewInformationWidgetPlugin.cxx │ │ ├── qMRMLThreeDViewInformationWidgetPlugin.h │ │ ├── qMRMLThreeDViewPlugin.cxx │ │ ├── qMRMLThreeDViewPlugin.h │ │ ├── qMRMLTransformSlidersPlugin.cxx │ │ ├── qMRMLTransformSlidersPlugin.h │ │ ├── qMRMLTreeViewPlugin.cxx │ │ ├── qMRMLTreeViewPlugin.h │ │ ├── qMRMLVolumeInfoWidgetPlugin.cxx │ │ ├── qMRMLVolumeInfoWidgetPlugin.h │ │ ├── qMRMLVolumeThresholdWidgetPlugin.cxx │ │ ├── qMRMLVolumeThresholdWidgetPlugin.h │ │ ├── qMRMLWidgetPlugin.cxx │ │ ├── qMRMLWidgetPlugin.h │ │ ├── qMRMLWidgetsAbstractPlugin.cxx │ │ ├── qMRMLWidgetsAbstractPlugin.h │ │ ├── qMRMLWidgetsPlugin.cxx │ │ ├── qMRMLWidgetsPlugin.h │ │ ├── qMRMLWindowLevelWidgetPlugin.cxx │ │ ├── qMRMLWindowLevelWidgetPlugin.h │ │ ├── qSlicerTablesModuleWidgetsPlugin.cxx │ │ └── qSlicerTablesModuleWidgetsPlugin.h │ │ ├── Resources │ │ ├── Icons │ │ │ ├── ClippingIntersection.png │ │ │ ├── ClippingUnion.png │ │ │ ├── GreenSpaceNegative.png │ │ │ ├── GreenSpacePositive.png │ │ │ ├── HotLinkOn.png │ │ │ ├── LUTs │ │ │ │ ├── AbdomenColors.png │ │ │ │ ├── SPL-BrainAtlas-ColorFile.png │ │ │ │ ├── blankLUT.png │ │ │ │ ├── cartilegeMIdGEMRIC-3T.png │ │ │ │ ├── cartilegeMRIdGEMRIC-1.5T.png │ │ │ │ ├── discreteBlue.png │ │ │ │ ├── discreteCool1.png │ │ │ │ ├── discreteCool2.png │ │ │ │ ├── discreteCool3.png │ │ │ │ ├── discreteCyan.png │ │ │ │ ├── discreteDesert.png │ │ │ │ ├── discreteFullRainbow.png │ │ │ │ ├── discreteGreen.png │ │ │ │ ├── discreteGrey.png │ │ │ │ ├── discreteInvertedGrey.png │ │ │ │ ├── discreteIron.png │ │ │ │ ├── discreteLabels.png │ │ │ │ ├── discreteMagenta.png │ │ │ │ ├── discreteOcean.png │ │ │ │ ├── discreteRainbow.png │ │ │ │ ├── discreteRandom.png │ │ │ │ ├── discreteRandomIntegers.png │ │ │ │ ├── discreteRed.png │ │ │ │ ├── discreteReverseRainbow.png │ │ │ │ ├── discreteWarm1.png │ │ │ │ ├── discreteWarm2.png │ │ │ │ ├── discreteWarm3.png │ │ │ │ ├── discreteYellow.png │ │ │ │ ├── discretefMRI.png │ │ │ │ ├── discretefMRIPA.png │ │ │ │ ├── freeSurferBlueRed.png │ │ │ │ ├── freeSurferGreenRed.png │ │ │ │ ├── freeSurferHeat.png │ │ │ │ ├── freeSurferRedBlue.png │ │ │ │ ├── freeSurferRedGreen.png │ │ │ │ ├── genericAnatomyColors.png │ │ │ │ ├── genericColors.png │ │ │ │ ├── labelsCustom.png │ │ │ │ ├── labelsNonSemantic.png │ │ │ │ ├── labelsPelvisColor.png │ │ │ │ ├── petPETHeat.png │ │ │ │ ├── petPETMIP.png │ │ │ │ ├── petPETRainbow.png │ │ │ │ ├── shadeCoolShade1.png │ │ │ │ ├── shadeCoolShade2.png │ │ │ │ ├── shadeCoolShade3.png │ │ │ │ ├── shadeWarmShade1.png │ │ │ │ ├── shadeWarmShade2.png │ │ │ │ ├── shadeWarmShade3.png │ │ │ │ ├── slicerBrainLUT2010.png │ │ │ │ ├── slicerShortLUT.png │ │ │ │ ├── tintCoolTint1.png │ │ │ │ ├── tintCoolTint2.png │ │ │ │ ├── tintCoolTint3.png │ │ │ │ ├── tintWarmTint1.png │ │ │ │ ├── tintWarmTint2.png │ │ │ │ └── tintWarmTint3.png │ │ │ ├── Layout3DTableView.png │ │ │ ├── LayoutChooseView.png │ │ │ ├── LayoutCompareView.png │ │ │ ├── LayoutCompareViewGrid.png │ │ │ ├── LayoutConventionalView.png │ │ │ ├── LayoutConventionalWidescreenView.png │ │ │ ├── LayoutConvetionalQuantitativeView.png │ │ │ ├── LayoutDual3DView.png │ │ │ ├── LayoutFiveByTwoSliceView.png │ │ │ ├── LayoutFourByThreeSliceView.png │ │ │ ├── LayoutFourByTwoSliceView.png │ │ │ ├── LayoutFourOverFourView.png │ │ │ ├── LayoutFourUpQuantitativeTableView.png │ │ │ ├── LayoutFourUpQuantitativeView.png │ │ │ ├── LayoutFourUpTableView.png │ │ │ ├── LayoutFourUpView.png │ │ │ ├── LayoutLightboxView.png │ │ │ ├── LayoutOneUp3DView.png │ │ │ ├── LayoutOneUpGreenSliceView.png │ │ │ ├── LayoutOneUpQuantitativeView.png │ │ │ ├── LayoutOneUpRedSliceView.png │ │ │ ├── LayoutOneUpYellowSliceView.png │ │ │ ├── LayoutSideBySideCompareView.png │ │ │ ├── LayoutSideBySideView.png │ │ │ ├── LayoutTabbed3DView.png │ │ │ ├── LayoutTabbedSliceView.png │ │ │ ├── LayoutThreeByThreeSliceView.png │ │ │ ├── LayoutThreeOverThreeQuantitativeView.png │ │ │ ├── LayoutThreeOverThreeView.png │ │ │ ├── LayoutTriple3DView.png │ │ │ ├── LayoutTwoOverTwoView.png │ │ │ ├── LinkOff.png │ │ │ ├── LinkOn.png │ │ │ ├── OrientationMarker.png │ │ │ ├── PushPinIn.png │ │ │ ├── PushPinOut.png │ │ │ ├── RedSpaceNegative.png │ │ │ ├── RedSpacePositive.png │ │ │ ├── Ruler.png │ │ │ ├── SliceInterpolationOff.png │ │ │ ├── SliceInterpolationOn.png │ │ │ ├── SliceMoreOptions.png │ │ │ ├── SliceViewerBG.png │ │ │ ├── SliceViewerFG.png │ │ │ ├── SliceViewerLB.png │ │ │ ├── SliceViewerOR.png │ │ │ ├── SliceViewerSEG.png │ │ │ ├── SliceWidgetOff.png │ │ │ ├── SliceWidgetOn.png │ │ │ ├── SlicerAutomaticSliceSpacing.png │ │ │ ├── SlicerManualSliceSpacing.png │ │ │ ├── SlicerRotateToPixelSpace.png │ │ │ ├── SlicesAnnotation.png │ │ │ ├── SlicesComposite.png │ │ │ ├── SlicesCrosshair.png │ │ │ ├── SlicesFadeToBG.png │ │ │ ├── SlicesFadeToFG.png │ │ │ ├── SlicesFeaturesVisible.png │ │ │ ├── SlicesFieldOfView.png │ │ │ ├── SlicesFitToWindow.png │ │ │ ├── SlicesLabelFill.png │ │ │ ├── SlicesLabelNoOutline.png │ │ │ ├── SlicesLabelOpacity.png │ │ │ ├── SlicesLabelOutline.png │ │ │ ├── SlicesLabelOutlineAndFill.png │ │ │ ├── SlicesSpatialUnit.png │ │ │ ├── SlicesToggleFgBg.png │ │ │ ├── SlicesWinLevThreshCol.png │ │ │ ├── SnapshotDelete.png │ │ │ ├── SnapshotRestore.png │ │ │ ├── ViewAxis.png │ │ │ ├── ViewCamera.png │ │ │ ├── ViewCameraSelect.png │ │ │ ├── ViewCapture.png │ │ │ ├── ViewCenter.png │ │ │ ├── ViewFPS.png │ │ │ ├── ViewFeaturesVisible.png │ │ │ ├── ViewOrtho.png │ │ │ ├── ViewPerspective.png │ │ │ ├── ViewPitch.png │ │ │ ├── ViewRock.png │ │ │ ├── ViewRoll.png │ │ │ ├── ViewSpin.png │ │ │ ├── ViewStereo.png │ │ │ ├── ViewYaw.png │ │ │ ├── ViewZoomIn.png │ │ │ ├── ViewZoomOut.png │ │ │ ├── VisibleOff.png │ │ │ ├── VisibleOn.png │ │ │ ├── VisibleOrInvisible.png │ │ │ ├── VisiblePartially.png │ │ │ ├── YellowSpaceNegative.png │ │ │ ├── YellowSpacePositive.png │ │ │ ├── column_add.png │ │ │ ├── column_delete.png │ │ │ ├── column_header_lock.png │ │ │ ├── row_add.png │ │ │ ├── row_delete.png │ │ │ └── row_header_lock.png │ │ ├── UI │ │ │ ├── qMRMLChartViewControllerWidget.ui │ │ │ ├── qMRMLClipNodeWidget.ui │ │ │ ├── qMRMLColorPickerWidget.ui │ │ │ ├── qMRMLDisplayNodeWidget.ui │ │ │ ├── qMRMLEventLoggerWidget.ui │ │ │ ├── qMRMLModelInfoWidget.ui │ │ │ ├── qMRMLNodeAttributeTableView.ui │ │ │ ├── qMRMLNodeAttributeTableWidget.ui │ │ │ ├── qMRMLPlotViewControllerWidget.ui │ │ │ ├── qMRMLROIWidget.ui │ │ │ ├── qMRMLSceneFactoryWidget.ui │ │ │ ├── qMRMLScreenShotDialog.ui │ │ │ ├── qMRMLSegmentSelectorWidget.ui │ │ │ ├── qMRMLSliceControllerWidget.ui │ │ │ ├── qMRMLSliceInformationWidget.ui │ │ │ ├── qMRMLSliceWidget.ui │ │ │ ├── qMRMLTableViewControllerWidget.ui │ │ │ ├── qMRMLTestModelViews.ui │ │ │ ├── qMRMLThreeDViewControllerWidget.ui │ │ │ ├── qMRMLThreeDViewInformationWidget.ui │ │ │ ├── qMRMLTransformSliders.ui │ │ │ ├── qMRMLVolumeInfoWidget.ui │ │ │ ├── qMRMLVolumeThresholdWidget.ui │ │ │ └── qMRMLWindowLevelWidget.ui │ │ ├── jqPlot.qrc.in │ │ └── qMRMLWidgets.qrc │ │ ├── Testing │ │ ├── .NoDartCoverage │ │ ├── CMakeLists.txt │ │ ├── qMRMLChartViewTest.py │ │ ├── qMRMLCheckableNodeComboBoxEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLCheckableNodeComboBoxEventTranslatorPlayerTest1.xml │ │ ├── qMRMLCheckableNodeComboBoxTest.cxx │ │ ├── qMRMLCheckableNodeComboBoxTest1.cxx │ │ ├── qMRMLClipNodeWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLClipNodeWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLClipNodeWidgetTest1.cxx │ │ ├── qMRMLCollapsibleButtonEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLCollapsibleButtonEventTranslatorPlayerTest1.xml │ │ ├── qMRMLColorListViewEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLColorListViewEventTranslatorPlayerTest1.xml │ │ ├── qMRMLColorListViewTest1.cxx │ │ ├── qMRMLColorModelTest.cxx │ │ ├── qMRMLColorModelTest1.cxx │ │ ├── qMRMLColorPickerWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLColorPickerWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLColorPickerWidgetEventTranslatorPlayerTest2.xml │ │ ├── qMRMLColorPickerWidgetTest1.cxx │ │ ├── qMRMLColorPickerWidgetTest2.cxx │ │ ├── qMRMLColorPickerWidgetTest3.cxx │ │ ├── qMRMLColorTableComboBoxEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLColorTableComboBoxEventTranslatorPlayerTest1.xml │ │ ├── qMRMLColorTableComboBoxTest1.cxx │ │ ├── qMRMLColorTableViewEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLColorTableViewEventTranslatorPlayerTest1.xml │ │ ├── qMRMLColorTableViewTest1.cxx │ │ ├── qMRMLDisplayNodeViewComboBoxTest.cxx │ │ ├── qMRMLDisplayNodeWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLDisplayNodeWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLDisplayNodeWidgetTest1.cxx │ │ ├── qMRMLLabelComboBoxEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLLabelComboBoxEventTranslatorPlayerTest1.xml │ │ ├── qMRMLLabelComboBoxTest.cxx │ │ ├── qMRMLLayoutManagerTest1.cxx │ │ ├── qMRMLLayoutManagerTest2.cxx │ │ ├── qMRMLLayoutManagerTest3.cxx │ │ ├── qMRMLLayoutManagerTest4.cxx │ │ ├── qMRMLLayoutManagerTestHelper.cxx │ │ ├── qMRMLLayoutManagerVisibilityTest.cxx │ │ ├── qMRMLLayoutManagerWithCustomFactoryTest.cxx │ │ ├── qMRMLLinearTransformSliderEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLLinearTransformSliderEventTranslatorPlayerTest1.xml │ │ ├── qMRMLLinearTransformSliderTest1.cxx │ │ ├── qMRMLListWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLListWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLListWidgetTest1.cxx │ │ ├── qMRMLMatrixWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLMatrixWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLMatrixWidgetTest1.cxx │ │ ├── qMRMLModelInfoWidgetTest1.cxx │ │ ├── qMRMLModelTest1.cxx │ │ ├── qMRMLModelTreeViewTest1.cxx │ │ ├── qMRMLNavigationViewEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLNavigationViewEventTranslatorPlayerTest1.xml │ │ ├── qMRMLNavigationViewEventTranslatorPlayerTest1_QVTKOpenGLWidget.xml │ │ ├── qMRMLNavigationViewTest1.cxx │ │ ├── qMRMLNodeAttributeTableViewTest.cxx │ │ ├── qMRMLNodeAttributeTableWidgetTest.cxx │ │ ├── qMRMLNodeComboBoxEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLNodeComboBoxEventTranslatorPlayerTest1.xml │ │ ├── qMRMLNodeComboBoxLazyUpdateTest1.cxx │ │ ├── qMRMLNodeComboBoxTest1.cxx │ │ ├── qMRMLNodeComboBoxTest2.cxx │ │ ├── qMRMLNodeComboBoxTest3.cxx │ │ ├── qMRMLNodeComboBoxTest4.cxx │ │ ├── qMRMLNodeComboBoxTest5.cxx │ │ ├── qMRMLNodeComboBoxTest6.cxx │ │ ├── qMRMLNodeComboBoxTest7.cxx │ │ ├── qMRMLNodeComboBoxTest8.cxx │ │ ├── qMRMLNodeComboBoxTest9.cxx │ │ ├── qMRMLNodeFactoryTest1.cxx │ │ ├── qMRMLNodeObject.cxx │ │ ├── qMRMLNodeObject.h │ │ ├── qMRMLPlotViewTest1.cxx │ │ ├── qMRMLROIWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLROIWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLRangeWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLRangeWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLScalarInvariantComboBoxEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLScalarInvariantComboBoxEventTranslatorPlayerTest1.xml │ │ ├── qMRMLScalarInvariantComboBoxTest1.cxx │ │ ├── qMRMLSceneCategoryModelTest1.cxx │ │ ├── qMRMLSceneColorTableModelTest1.cxx │ │ ├── qMRMLSceneDisplayableModelTest1.cxx │ │ ├── qMRMLSceneDisplayableModelTest2.cxx │ │ ├── qMRMLSceneFactoryWidgetTest1.cxx │ │ ├── qMRMLSceneHierarchyModelTest1.cxx │ │ ├── qMRMLSceneModelTest.cxx │ │ ├── qMRMLSceneModelTest1.cxx │ │ ├── qMRMLSceneTransformModelTest1.cxx │ │ ├── qMRMLSceneTransformModelTest2.cxx │ │ ├── qMRMLSliceControllerWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLSliceControllerWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLSliceControllerWidgetTest.cxx │ │ ├── qMRMLSliceWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLSliceWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLSliceWidgetEventTranslatorPlayerTest1_QVTKOpenGLWidget.xml │ │ ├── qMRMLSliceWidgetTest1.cxx │ │ ├── qMRMLSliceWidgetTest1Helper.h │ │ ├── qMRMLSliceWidgetTest2.cxx │ │ ├── qMRMLTableViewTest1.cxx │ │ ├── qMRMLThreeDViewControllerWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLThreeDViewControllerWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLThreeDViewTest1.cxx │ │ ├── qMRMLThreeDWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLThreeDWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLThreeDWidgetEventTranslatorPlayerTest1_QVTKOpenGLWidget.xml │ │ ├── qMRMLThreeDWidgetTest1.cxx │ │ ├── qMRMLTransformSlidersEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLTransformSlidersEventTranslatorPlayerTest1.xml │ │ ├── qMRMLTransformSlidersTest1.cxx │ │ ├── qMRMLTreeViewEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLTreeViewEventTranslatorPlayerTest1.xml │ │ ├── qMRMLTreeViewEventTranslatorPlayerTest2.xml │ │ ├── qMRMLTreeViewTest1.cxx │ │ ├── qMRMLUtf8Test1.cxx │ │ ├── qMRMLUtilsTest1.cxx │ │ ├── qMRMLVolumeInfoWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLVolumeInfoWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLVolumeInfoWidgetTest1.cxx │ │ ├── qMRMLVolumeThresholdWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLVolumeThresholdWidgetEventTranslatorPlayerTest1.xml │ │ ├── qMRMLVolumeThresholdWidgetTest1.cxx │ │ ├── qMRMLVolumeThresholdWidgetTest2.cxx │ │ ├── qMRMLWidgetCxxTests.h │ │ ├── qMRMLWidgetsExportTest1.cxx │ │ ├── qMRMLWindowLevelWidgetEventTranslatorPlayerTest1.cxx │ │ ├── qMRMLWindowLevelWidgetEventTranslatorPlayerTest1.xml │ │ └── qMRMLWindowLevelWidgetTest1.cxx │ │ ├── qMRMLCaptureToolBar.cxx │ │ ├── qMRMLCaptureToolBar.h │ │ ├── qMRMLChartView.cxx │ │ ├── qMRMLChartView.h │ │ ├── qMRMLChartViewControllerWidget.cxx │ │ ├── qMRMLChartViewControllerWidget.h │ │ ├── qMRMLChartViewControllerWidget_p.h │ │ ├── qMRMLChartView_p.h │ │ ├── qMRMLChartWidget.cxx │ │ ├── qMRMLChartWidget.h │ │ ├── qMRMLCheckableNodeComboBox.cxx │ │ ├── qMRMLCheckableNodeComboBox.h │ │ ├── qMRMLCheckableNodeComboBoxEventPlayer.cpp │ │ ├── qMRMLCheckableNodeComboBoxEventPlayer.h │ │ ├── qMRMLClipNodeWidget.cxx │ │ ├── qMRMLClipNodeWidget.h │ │ ├── qMRMLCollapsibleButton.cxx │ │ ├── qMRMLCollapsibleButton.h │ │ ├── qMRMLColorListView.cxx │ │ ├── qMRMLColorListView.h │ │ ├── qMRMLColorModel.cxx │ │ ├── qMRMLColorModel.h │ │ ├── qMRMLColorModel_p.h │ │ ├── qMRMLColorPickerWidget.cxx │ │ ├── qMRMLColorPickerWidget.h │ │ ├── qMRMLColorTableComboBox.cxx │ │ ├── qMRMLColorTableComboBox.h │ │ ├── qMRMLColorTableView.cxx │ │ ├── qMRMLColorTableView.h │ │ ├── qMRMLColors.cxx │ │ ├── qMRMLColors.h │ │ ├── qMRMLCoordinatesWidget.cxx │ │ ├── qMRMLCoordinatesWidget.h │ │ ├── qMRMLDisplayNodeViewComboBox.cxx │ │ ├── qMRMLDisplayNodeViewComboBox.h │ │ ├── qMRMLDisplayNodeWidget.cxx │ │ ├── qMRMLDisplayNodeWidget.h │ │ ├── qMRMLEventBrokerConnection.cxx │ │ ├── qMRMLEventBrokerConnection.h │ │ ├── qMRMLEventBrokerWidget.cxx │ │ ├── qMRMLEventBrokerWidget.h │ │ ├── qMRMLEventLogger.cxx │ │ ├── qMRMLEventLogger.h │ │ ├── qMRMLEventLoggerWidget.cxx │ │ ├── qMRMLEventLoggerWidget.h │ │ ├── qMRMLEventLogger_p.h │ │ ├── qMRMLExpandingWebView.cxx │ │ ├── qMRMLExpandingWebView.h │ │ ├── qMRMLExpandingWebView_p.h │ │ ├── qMRMLItemDelegate.cxx │ │ ├── qMRMLItemDelegate.h │ │ ├── qMRMLLabelComboBox.cxx │ │ ├── qMRMLLabelComboBox.h │ │ ├── qMRMLLayoutManager.cxx │ │ ├── qMRMLLayoutManager.h │ │ ├── qMRMLLayoutManager_p.h │ │ ├── qMRMLLayoutViewFactory.cxx │ │ ├── qMRMLLayoutViewFactory.h │ │ ├── qMRMLLayoutWidget.cxx │ │ ├── qMRMLLayoutWidget.h │ │ ├── qMRMLLinearTransformSlider.cxx │ │ ├── qMRMLLinearTransformSlider.h │ │ ├── qMRMLListWidget.cxx │ │ ├── qMRMLListWidget.h │ │ ├── qMRMLMatrixWidget.cxx │ │ ├── qMRMLMatrixWidget.h │ │ ├── qMRMLModelInfoWidget.cxx │ │ ├── qMRMLModelInfoWidget.h │ │ ├── qMRMLNavigationView.cxx │ │ ├── qMRMLNavigationView.h │ │ ├── qMRMLNodeAttributeTableView.cxx │ │ ├── qMRMLNodeAttributeTableView.h │ │ ├── qMRMLNodeAttributeTableWidget.cxx │ │ ├── qMRMLNodeAttributeTableWidget.h │ │ ├── qMRMLNodeComboBox.cxx │ │ ├── qMRMLNodeComboBox.h │ │ ├── qMRMLNodeComboBoxDelegate.cxx │ │ ├── qMRMLNodeComboBoxDelegate.h │ │ ├── qMRMLNodeComboBoxEventPlayer.cpp │ │ ├── qMRMLNodeComboBoxEventPlayer.h │ │ ├── qMRMLNodeComboBoxEventTranslator.cpp │ │ ├── qMRMLNodeComboBoxEventTranslator.h │ │ ├── qMRMLNodeComboBoxMenuDelegate.cxx │ │ ├── qMRMLNodeComboBoxMenuDelegate.h │ │ ├── qMRMLNodeComboBox_p.h │ │ ├── qMRMLNodeFactory.cxx │ │ ├── qMRMLNodeFactory.h │ │ ├── qMRMLPlotView.cxx │ │ ├── qMRMLPlotView.h │ │ ├── qMRMLPlotViewControllerWidget.cxx │ │ ├── qMRMLPlotViewControllerWidget.h │ │ ├── qMRMLPlotViewControllerWidget_p.h │ │ ├── qMRMLPlotView_p.h │ │ ├── qMRMLPlotWidget.cxx │ │ ├── qMRMLPlotWidget.h │ │ ├── qMRMLROIWidget.cxx │ │ ├── qMRMLROIWidget.h │ │ ├── qMRMLRangeWidget.cxx │ │ ├── qMRMLRangeWidget.h │ │ ├── qMRMLScalarInvariantComboBox.cxx │ │ ├── qMRMLScalarInvariantComboBox.h │ │ ├── qMRMLSceneCategoryModel.cxx │ │ ├── qMRMLSceneCategoryModel.h │ │ ├── qMRMLSceneColorTableModel.cxx │ │ ├── qMRMLSceneColorTableModel.h │ │ ├── qMRMLSceneDisplayableModel.cxx │ │ ├── qMRMLSceneDisplayableModel.h │ │ ├── qMRMLSceneDisplayableModel_p.h │ │ ├── qMRMLSceneFactoryWidget.cxx │ │ ├── qMRMLSceneFactoryWidget.h │ │ ├── qMRMLSceneHierarchyModel.cxx │ │ ├── qMRMLSceneHierarchyModel.h │ │ ├── qMRMLSceneHierarchyModel_p.h │ │ ├── qMRMLSceneModel.cxx │ │ ├── qMRMLSceneModel.h │ │ ├── qMRMLSceneModel_p.h │ │ ├── qMRMLSceneTransformModel.cxx │ │ ├── qMRMLSceneTransformModel.h │ │ ├── qMRMLSceneViewMenu.cxx │ │ ├── qMRMLSceneViewMenu.h │ │ ├── qMRMLSceneViewMenu_p.h │ │ ├── qMRMLScreenShotDialog.cxx │ │ ├── qMRMLScreenShotDialog.h │ │ ├── qMRMLSegmentSelectorWidget.cxx │ │ ├── qMRMLSegmentSelectorWidget.h │ │ ├── qMRMLSliceControllerWidget.cxx │ │ ├── qMRMLSliceControllerWidget.h │ │ ├── qMRMLSliceControllerWidget_p.h │ │ ├── qMRMLSliceInformationWidget.cxx │ │ ├── qMRMLSliceInformationWidget.h │ │ ├── qMRMLSliceInformationWidget_p.h │ │ ├── qMRMLSliceView.cxx │ │ ├── qMRMLSliceView.h │ │ ├── qMRMLSliceView_p.h │ │ ├── qMRMLSliceWidget.cxx │ │ ├── qMRMLSliceWidget.h │ │ ├── qMRMLSliceWidget_p.h │ │ ├── qMRMLSliderWidget.cxx │ │ ├── qMRMLSliderWidget.h │ │ ├── qMRMLSortFilterHierarchyProxyModel.cxx │ │ ├── qMRMLSortFilterHierarchyProxyModel.h │ │ ├── qMRMLSortFilterProxyModel.cxx │ │ ├── qMRMLSortFilterProxyModel.h │ │ ├── qMRMLSpinBox.cxx │ │ ├── qMRMLSpinBox.h │ │ ├── qMRMLTableModel.cxx │ │ ├── qMRMLTableModel.h │ │ ├── qMRMLTableView.cxx │ │ ├── qMRMLTableView.h │ │ ├── qMRMLTableViewControllerWidget.cxx │ │ ├── qMRMLTableViewControllerWidget.h │ │ ├── qMRMLTableViewControllerWidget_p.h │ │ ├── qMRMLTableView_p.h │ │ ├── qMRMLTableWidget.cxx │ │ ├── qMRMLTableWidget.h │ │ ├── qMRMLThreeDView.cxx │ │ ├── qMRMLThreeDView.h │ │ ├── qMRMLThreeDViewControllerWidget.cxx │ │ ├── qMRMLThreeDViewControllerWidget.h │ │ ├── qMRMLThreeDViewControllerWidget_p.h │ │ ├── qMRMLThreeDViewInformationWidget.cxx │ │ ├── qMRMLThreeDViewInformationWidget.h │ │ ├── qMRMLThreeDViewInformationWidget_p.h │ │ ├── qMRMLThreeDView_p.h │ │ ├── qMRMLThreeDWidget.cxx │ │ ├── qMRMLThreeDWidget.h │ │ ├── qMRMLTransformSliders.cxx │ │ ├── qMRMLTransformSliders.h │ │ ├── qMRMLTreeView.cxx │ │ ├── qMRMLTreeView.h │ │ ├── qMRMLTreeViewEventPlayer.cpp │ │ ├── qMRMLTreeViewEventPlayer.h │ │ ├── qMRMLTreeViewEventTranslator.cpp │ │ ├── qMRMLTreeViewEventTranslator.h │ │ ├── qMRMLTreeView_p.h │ │ ├── qMRMLUtils.cxx │ │ ├── qMRMLUtils.h │ │ ├── qMRMLViewControllerBar.cxx │ │ ├── qMRMLViewControllerBar.h │ │ ├── qMRMLViewControllerBar_p.h │ │ ├── qMRMLVolumeInfoWidget.cxx │ │ ├── qMRMLVolumeInfoWidget.h │ │ ├── qMRMLVolumeThresholdWidget.cxx │ │ ├── qMRMLVolumeThresholdWidget.h │ │ ├── qMRMLVolumeWidget.cxx │ │ ├── qMRMLVolumeWidget.h │ │ ├── qMRMLVolumeWidget_p.h │ │ ├── qMRMLWidget.cxx │ │ ├── qMRMLWidget.h │ │ ├── qMRMLWidgetsConfigure.h.in │ │ ├── qMRMLWidgetsExport.h │ │ ├── qMRMLWindowLevelWidget.cxx │ │ └── qMRMLWindowLevelWidget.h ├── RemoteIO │ ├── CMakeLists.txt │ ├── vtkHTTPHandler.cxx │ ├── vtkHTTPHandler.h │ ├── vtkRemoteIO.h │ ├── vtkRemoteIOConfigure.h.in │ └── vtkRemoteIOExport.h ├── vtkAddon │ ├── CMakeLists.txt │ ├── Testing │ │ ├── CMakeLists.txt │ │ ├── vtkAddonMathUtilitiesTest1.cxx │ │ ├── vtkAddonTestingUtilitiesTest1.cxx │ │ ├── vtkLoggingMacrosTest1.cxx │ │ └── vtkPersonInformationTest1.cxx │ ├── vtkAddon.h │ ├── vtkAddonConfig.cmake.in │ ├── vtkAddonConfigure.h.in │ ├── vtkAddonExport.h │ ├── vtkAddonMathUtilities.cxx │ ├── vtkAddonMathUtilities.h │ ├── vtkAddonSetGet.h │ ├── vtkAddonTestingMacros.h │ ├── vtkAddonTestingUtilities.cxx │ ├── vtkAddonTestingUtilities.h │ ├── vtkAddonTestingUtilities.txx │ ├── vtkErrorSink.cxx │ ├── vtkErrorSink.h │ ├── vtkLoggingMacros.h │ ├── vtkOpenGLShaderComputation.cxx │ ├── vtkOpenGLShaderComputation.h │ ├── vtkOpenGLTextureImage.cxx │ ├── vtkOpenGLTextureImage.h │ ├── vtkOrientedBSplineTransform.cxx │ ├── vtkOrientedBSplineTransform.h │ ├── vtkOrientedGridTransform.cxx │ ├── vtkOrientedGridTransform.h │ ├── vtkPersonInformation.cxx │ ├── vtkPersonInformation.h │ ├── vtkRawRGBVolumeCodec.cxx │ ├── vtkRawRGBVolumeCodec.h │ ├── vtkStreamingVolumeCodec.cxx │ ├── vtkStreamingVolumeCodec.h │ ├── vtkStreamingVolumeCodecFactory.cxx │ ├── vtkStreamingVolumeCodecFactory.h │ ├── vtkStreamingVolumeFrame.cxx │ ├── vtkStreamingVolumeFrame.h │ ├── vtkTestingOutputWindow.cxx │ └── vtkTestingOutputWindow.h ├── vtkITK │ ├── CMakeLists.txt │ ├── Testing │ │ ├── CMakeLists.txt │ │ ├── VTKITKVectorReader.cxx │ │ ├── vtkITKArchetypeDiffusionTensorReaderFile.py │ │ └── vtkITKArchetypeScalarReaderFile.py │ ├── itkConstrainedValueMultiplicationImageFilter.h │ ├── itkGrowCutSegmentationImageFilter.h │ ├── itkGrowCutSegmentationImageFilter.txx │ ├── itkLevelTracingImageFilter.h │ ├── itkLevelTracingImageFilter.txx │ ├── itkMorphologicalContourInterpolator.h │ ├── itkMorphologicalContourInterpolator.hxx │ ├── itkNewOtsuThresholdImageCalculator.h │ ├── itkNewOtsuThresholdImageCalculator.txx │ ├── itkNewOtsuThresholdImageFilter.h │ ├── itkNewOtsuThresholdImageFilter.txx │ ├── itkTimeSeriesDatabase.h │ ├── itkTimeSeriesDatabase.txx │ ├── itkTimeSeriesDatabaseHelper.h │ ├── vtkITK.h │ ├── vtkITKArchetypeDiffusionTensorImageReaderFile.cxx │ ├── vtkITKArchetypeDiffusionTensorImageReaderFile.h │ ├── vtkITKArchetypeImageSeriesReader.cxx │ ├── vtkITKArchetypeImageSeriesReader.h │ ├── vtkITKArchetypeImageSeriesScalarReader.cxx │ ├── vtkITKArchetypeImageSeriesScalarReader.h │ ├── vtkITKArchetypeImageSeriesVectorReaderFile.cxx │ ├── vtkITKArchetypeImageSeriesVectorReaderFile.h │ ├── vtkITKArchetypeImageSeriesVectorReaderSeries.cxx │ ├── vtkITKArchetypeImageSeriesVectorReaderSeries.h │ ├── vtkITKConfig.cmake.in │ ├── vtkITKConfigure.h.in │ ├── vtkITKDistanceTransform.cxx │ ├── vtkITKDistanceTransform.h │ ├── vtkITKExport.h │ ├── vtkITKGradientAnisotropicDiffusionImageFilter.cxx │ ├── vtkITKGradientAnisotropicDiffusionImageFilter.h │ ├── vtkITKGrowCutSegmentationImageFilter.cxx │ ├── vtkITKGrowCutSegmentationImageFilter.h │ ├── vtkITKImageMargin.cxx │ ├── vtkITKImageMargin.h │ ├── vtkITKImageThresholdCalculator.cxx │ ├── vtkITKImageThresholdCalculator.h │ ├── vtkITKImageToImageFilter.h │ ├── vtkITKImageToImageFilter2DFF.h │ ├── vtkITKImageToImageFilterF2F.h │ ├── vtkITKImageToImageFilterF2F2.h │ ├── vtkITKImageToImageFilterF3F3.h │ ├── vtkITKImageToImageFilterFF.h │ ├── vtkITKImageToImageFilterFUL.h │ ├── vtkITKImageToImageFilterSS.h │ ├── vtkITKImageToImageFilterULUL.h │ ├── vtkITKImageToImageFilterUSF.h │ ├── vtkITKImageToImageFilterUSUL.h │ ├── vtkITKImageToImageFilterUSUS.h │ ├── vtkITKImageWriter.cxx │ ├── vtkITKImageWriter.h │ ├── vtkITKIslandMath.cxx │ ├── vtkITKIslandMath.h │ ├── vtkITKLabelShapeStatistics.cxx │ ├── vtkITKLabelShapeStatistics.h │ ├── vtkITKLevelTracing3DImageFilter.cxx │ ├── vtkITKLevelTracing3DImageFilter.h │ ├── vtkITKLevelTracingImageFilter.cxx │ ├── vtkITKLevelTracingImageFilter.h │ ├── vtkITKMorphologicalContourInterpolator.cxx │ ├── vtkITKMorphologicalContourInterpolator.h │ ├── vtkITKNewOtsuThresholdImageFilter.cxx │ ├── vtkITKNewOtsuThresholdImageFilter.h │ ├── vtkITKNumericTraits.cxx │ ├── vtkITKNumericTraits.h │ ├── vtkITKTimeSeriesDatabase.cxx │ ├── vtkITKTimeSeriesDatabase.h │ ├── vtkITKUtility.h │ ├── vtkITKWandImageFilter.cxx │ └── vtkITKWandImageFilter.h ├── vtkSegmentationCore │ ├── CMakeLists.txt │ ├── Testing │ │ ├── CMakeLists.txt │ │ ├── vtkClosedSurfaceToFractionalLabelMapConversionTest1.cxx │ │ ├── vtkSegmentationConverterTest1.cxx │ │ ├── vtkSegmentationHistoryTest1.cxx │ │ ├── vtkSegmentationTest1.cxx │ │ └── vtkSegmentationTest2.cxx │ ├── vtkBinaryLabelmapToClosedSurfaceConversionRule.cxx │ ├── vtkBinaryLabelmapToClosedSurfaceConversionRule.h │ ├── vtkCalculateOversamplingFactor.cxx │ ├── vtkCalculateOversamplingFactor.h │ ├── vtkClosedSurfaceToBinaryLabelmapConversionRule.cxx │ ├── vtkClosedSurfaceToBinaryLabelmapConversionRule.h │ ├── vtkClosedSurfaceToFractionalLabelmapConversionRule.cxx │ ├── vtkClosedSurfaceToFractionalLabelmapConversionRule.h │ ├── vtkFractionalLabelmapToClosedSurfaceConversionRule.cxx │ ├── vtkFractionalLabelmapToClosedSurfaceConversionRule.h │ ├── vtkOrientedImageData.cxx │ ├── vtkOrientedImageData.h │ ├── vtkOrientedImageDataResample.cxx │ ├── vtkOrientedImageDataResample.h │ ├── vtkPolyDataToFractionalLabelmapFilter.cxx │ ├── vtkPolyDataToFractionalLabelmapFilter.h │ ├── vtkSegment.cxx │ ├── vtkSegment.h │ ├── vtkSegmentation.cxx │ ├── vtkSegmentation.h │ ├── vtkSegmentationConverter.cxx │ ├── vtkSegmentationConverter.h │ ├── vtkSegmentationConverterFactory.cxx │ ├── vtkSegmentationConverterFactory.h │ ├── vtkSegmentationConverterRule.cxx │ ├── vtkSegmentationConverterRule.h │ ├── vtkSegmentationCoreConfigure.h.in │ ├── vtkSegmentationHistory.cxx │ ├── vtkSegmentationHistory.h │ ├── vtkSegmentationModifier.cxx │ ├── vtkSegmentationModifier.h │ ├── vtkTopologicalHierarchy.cxx │ └── vtkTopologicalHierarchy.h └── vtkTeem │ ├── CMakeLists.txt │ ├── Testing │ ├── CMakeLists.txt │ └── vtkDiffusionTensorMathematicsTest1.cxx │ ├── vtkDiffusionTensorGlyph.cxx │ ├── vtkDiffusionTensorGlyph.h │ ├── vtkDiffusionTensorMathematics.cxx │ ├── vtkDiffusionTensorMathematics.h │ ├── vtkImageLabelCombine.cxx │ ├── vtkImageLabelCombine.h │ ├── vtkTeemConfig.cmake.in │ ├── vtkTeemConfigure.h.in │ ├── vtkTeemNRRDReader.cxx │ ├── vtkTeemNRRDReader.h │ ├── vtkTeemNRRDWriter.cxx │ └── vtkTeemNRRDWriter.h ├── License.txt ├── Modules ├── CLI │ ├── ACPCTransform │ │ ├── ACPCTransform.cxx │ │ ├── ACPCTransform.xml │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ └── Input │ │ │ │ ├── ACPC.fcsv │ │ │ │ ├── ACPCTest.mrml │ │ │ │ └── midsag.fcsv │ │ ├── Testing │ │ │ ├── ACPCTransformTest.cxx │ │ │ └── CMakeLists.txt │ │ ├── vtkPrincipalAxesAlign.cxx │ │ └── vtkPrincipalAxesAlign.h │ ├── AddScalarVolumes │ │ ├── AddScalarVolumes.cxx │ │ ├── AddScalarVolumes.xml │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── AddScalarVolumesTest.nhdr.md5 │ │ │ │ ├── AddScalarVolumesTest.raw.md5 │ │ │ │ ├── AddScalarVolumesTest_CHAR.mha.md5 │ │ │ │ ├── AddScalarVolumesTest_DOUBLE.mha.md5 │ │ │ │ ├── AddScalarVolumesTest_FLOAT.mha.md5 │ │ │ │ ├── AddScalarVolumesTest_INT.mha.md5 │ │ │ │ ├── AddScalarVolumesTest_LONG.mha.md5 │ │ │ │ ├── AddScalarVolumesTest_SHORT.mha.md5 │ │ │ │ ├── AddScalarVolumesTest_UCHAR.mha.md5 │ │ │ │ ├── AddScalarVolumesTest_UINT.mha.md5 │ │ │ │ ├── AddScalarVolumesTest_ULONG.mha.md5 │ │ │ │ └── AddScalarVolumesTest_USHORT.mha.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ ├── CTHeadAxial.raw.gz.md5 │ │ │ │ ├── brainSliceCHAR.mha.md5 │ │ │ │ ├── brainSliceDOUBLE.mha.md5 │ │ │ │ ├── brainSliceFLOAT.mha.md5 │ │ │ │ ├── brainSliceINT.mha.md5 │ │ │ │ ├── brainSliceLONG.mha.md5 │ │ │ │ ├── brainSliceSHORT.mha.md5 │ │ │ │ ├── brainSliceUCHAR.mha.md5 │ │ │ │ ├── brainSliceUINT.mha.md5 │ │ │ │ ├── brainSliceULONG.mha.md5 │ │ │ │ └── brainSliceUSHORT.mha.md5 │ │ └── Testing │ │ │ ├── AddScalarVolumesTest.cxx │ │ │ └── CMakeLists.txt │ ├── CMakeLists.txt │ ├── CastScalarVolume │ │ ├── CMakeLists.txt │ │ ├── CastScalarVolume.cxx │ │ ├── CastScalarVolume.xml │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── CastScalarVolumeTestChar.nrrd.md5 │ │ │ │ ├── CastScalarVolumeTestDouble.nrrd.md5 │ │ │ │ ├── CastScalarVolumeTestFloat.nrrd.md5 │ │ │ │ ├── CastScalarVolumeTestInt.nrrd.md5 │ │ │ │ ├── CastScalarVolumeTestShort.nrrd.md5 │ │ │ │ ├── CastScalarVolumeTestUnsignedChar.nrrd.md5 │ │ │ │ ├── CastScalarVolumeTestUnsignedInt.nrrd.md5 │ │ │ │ └── CastScalarVolumeTestUnsignedShort.nrrd.md5 │ │ │ └── Input │ │ │ │ └── CastScalarVolumeTest.nrrd.md5 │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── CastScalarVolumeTest.cxx │ ├── CheckerBoardFilter │ │ ├── CMakeLists.txt │ │ ├── CheckerBoardFilter.cxx │ │ ├── CheckerBoardFilter.xml │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── CheckerBoardFilterTest.nhdr.md5 │ │ │ │ └── CheckerBoardFilterTest.raw.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ ├── CTHeadAxial.raw.gz.md5 │ │ │ │ ├── CTHeadAxialDoubled.nhdr.md5 │ │ │ │ └── CTHeadAxialDoubled.raw.gz.md5 │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── CheckerBoardFilterTest.cxx │ ├── CreateDICOMSeries │ │ ├── CMakeLists.txt │ │ ├── CreateDICOMSeries.cxx │ │ ├── CreateDICOMSeries.xml │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ └── CreateDICOMSeriesTest.dcm.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ └── CTHeadAxial.raw.gz.md5 │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── CreateDICOMSeriesTest.cxx │ ├── CurvatureAnisotropicDiffusion │ │ ├── CMakeLists.txt │ │ ├── CurvatureAnisotropicDiffusion.cxx │ │ ├── CurvatureAnisotropicDiffusion.xml │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── CurvatureAnisotropicDiffusionTest.nhdr.md5 │ │ │ │ └── CurvatureAnisotropicDiffusionTest.raw.gz.md5 │ │ │ └── Input │ │ │ │ ├── MRHeadResampled.nhdr.md5 │ │ │ │ └── MRHeadResampled.raw.gz.md5 │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── CurvatureAnisotropicDiffusionTest.cxx │ ├── DiffusionTensorTest │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ └── Input │ │ │ │ ├── helix-DTI.nhdr.md5 │ │ │ │ └── helix-DTI.raw.gz.md5 │ │ ├── DiffusionTensorTest.cxx │ │ ├── DiffusionTensorTest.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── DiffusionTensorTestTest.cxx │ ├── ExecutionModelTour │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ ├── CTHeadAxial.raw.gz.md5 │ │ │ │ ├── ExecutionModelTourTest.mrml │ │ │ │ ├── MRHeadResampled.nhdr.md5 │ │ │ │ └── MRHeadResampled.raw.gz.md5 │ │ ├── ExecutionModelTour.cxx │ │ ├── ExecutionModelTour.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── ExecutionModelTourTest.cxx │ ├── ExpertAutomatedRegistration │ │ ├── AffineImageToImageRegistrationMethod.cxx │ │ ├── BSplineImageToImageRegistrationMethod.cxx │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ └── Input │ │ │ │ ├── AffineUNC24.tfm │ │ │ │ ├── BSplineUNC24.tfm │ │ │ │ └── RigidUNC24.tfm │ │ ├── ExpertAutomatedRegistration.cxx │ │ ├── ExpertAutomatedRegistration.xml │ │ ├── ITKRegistrationHelper │ │ │ ├── itkAffineImageToImageRegistrationMethod.h │ │ │ ├── itkAffineImageToImageRegistrationMethod.txx │ │ │ ├── itkAnisotropicSimilarity3DTransform.h │ │ │ ├── itkAnisotropicSimilarity3DTransform.txx │ │ │ ├── itkAnisotropicSimilarityLandmarkBasedTransformInitializer.h │ │ │ ├── itkAnisotropicSimilarityLandmarkBasedTransformInitializer.txx │ │ │ ├── itkBSplineImageToImageRegistrationMethod.h │ │ │ ├── itkBSplineImageToImageRegistrationMethod.txx │ │ │ ├── itkImageRegionMomentsCalculator.h │ │ │ ├── itkImageRegionMomentsCalculator.txx │ │ │ ├── itkImageToImageRegistrationHelper.h │ │ │ ├── itkImageToImageRegistrationHelper.txx │ │ │ ├── itkImageToImageRegistrationMethod.h │ │ │ ├── itkImageToImageRegistrationMethod.txx │ │ │ ├── itkInitialImageToImageRegistrationMethod.h │ │ │ ├── itkInitialImageToImageRegistrationMethod.txx │ │ │ ├── itkOptimizedImageToImageRegistrationMethod.h │ │ │ ├── itkOptimizedImageToImageRegistrationMethod.txx │ │ │ ├── itkRigidImageToImageRegistrationMethod.h │ │ │ └── itkRigidImageToImageRegistrationMethod.txx │ │ ├── InitialImageToImageRegistrationMethod.cxx │ │ ├── RegisterImagesModuleLogic.cxx │ │ ├── RegisterImagesModuleLogic.h │ │ ├── RigidImageToImageRegistrationMethod.cxx │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── GenerateExpertAutomatedRegistrationTestData.cxx │ │ ├── itkAnisotropicSimilarity3DTransformTest.cxx │ │ ├── itkImageToImageRegistrationMethodTestingHelper.h │ │ ├── itkImageToImageRegistrationMethodTestingHelper.txx │ │ ├── logo.h │ │ └── logo.png │ ├── ExtractSkeleton │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ └── ExtractSkeletonTest.mha.md5 │ │ │ └── Input │ │ │ │ └── ExtractSkeleton.mha.md5 │ │ ├── ExtractSkeleton.cxx │ │ ├── ExtractSkeleton.xml │ │ ├── SkelGraph.cxx │ │ ├── SkelGraph.h │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── ExtractSkeletonTest.cxx │ │ ├── coordTypes.h │ │ ├── misc.cxx │ │ ├── misc.h │ │ ├── tilg_iso_3D.cxx │ │ └── tilg_iso_3D.h │ ├── FiducialRegistration │ │ ├── CMakeLists.txt │ │ ├── FiducialRegistration.cxx │ │ ├── FiducialRegistration.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── FiducialRegistrationTest.cxx │ ├── FreesurferSurfaceSectionExtraction │ │ ├── CMakeLists.txt │ │ ├── FreesurferSurfaceSectionExtraction.cxx │ │ ├── FreesurferSurfaceSectionExtraction.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── FreesurferSurfaceSectionExtractionTest.cxx │ ├── GaussianBlurImageFilter │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── GaussianBlurImageFilterTest.nhdr.md5 │ │ │ │ └── GaussianBlurImageFilterTest.raw.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ └── CTHeadAxial.raw.gz.md5 │ │ ├── GaussianBlurImageFilter.cxx │ │ ├── GaussianBlurImageFilter.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── GaussianBlurImageFilterTest.cxx │ ├── GradientAnisotropicDiffusion │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── GradientAnisotropicDiffusionTestWithImageSpacingOff.nhdr.md5 │ │ │ │ ├── GradientAnisotropicDiffusionTestWithImageSpacingOff.raw.gz.md5 │ │ │ │ ├── GradientAnisotropicDiffusionTestWithImageSpacingOn.nhdr.md5 │ │ │ │ └── GradientAnisotropicDiffusionTestWithImageSpacingOn.raw.gz.md5 │ │ │ └── Input │ │ │ │ ├── MRHeadResampled.nhdr.md5 │ │ │ │ └── MRHeadResampled.raw.gz.md5 │ │ ├── GradientAnisotropicDiffusion.cxx │ │ ├── GradientAnisotropicDiffusion.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── GradientAnisotropicDiffusionTest.cxx │ ├── GrayscaleFillHoleImageFilter │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── GrayscaleFillHoleTest.nhdr.md5 │ │ │ │ └── GrayscaleFillHoleTest.raw.gz.md5 │ │ │ └── Input │ │ │ │ ├── MRHeadResampled.nhdr.md5 │ │ │ │ └── MRHeadResampled.raw.gz.md5 │ │ ├── GrayscaleFillHoleImageFilter.cxx │ │ ├── GrayscaleFillHoleImageFilter.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── GrayscaleFillHoleImageFilterTest.cxx │ ├── GrayscaleGrindPeakImageFilter │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── GrayscaleGrindPeakTest.nhdr.md5 │ │ │ │ └── GrayscaleGrindPeakTest.raw.gz.md5 │ │ │ └── Input │ │ │ │ ├── MRHeadResampled.nhdr.md5 │ │ │ │ └── MRHeadResampled.raw.gz.md5 │ │ ├── GrayscaleGrindPeakImageFilter.cxx │ │ ├── GrayscaleGrindPeakImageFilter.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── GrayscaleGrindPeakImageFilterTest.cxx │ ├── GrayscaleModelMaker │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ └── CTHeadAxial.raw.gz.md5 │ │ ├── GrayscaleModelMaker.cxx │ │ ├── GrayscaleModelMaker.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── GrayscaleModelMakerTest.cxx │ ├── HistogramMatching │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── HistogramMatchingTest.nhdr.md5 │ │ │ │ └── HistogramMatchingTest.raw.gz.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ ├── CTHeadAxial.raw.gz.md5 │ │ │ │ ├── MRHeadResampled.nhdr.md5 │ │ │ │ └── MRHeadResampled.raw.gz.md5 │ │ ├── HistogramMatching.cxx │ │ ├── HistogramMatching.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── HistogramMatchingTest.cxx │ ├── ImageData │ │ ├── BillsLogo.png │ │ ├── ITKLogo.png │ │ ├── ITKLogo16x16.png │ │ ├── MITLogo.png │ │ ├── MIT_NAMIC_Logo.png │ │ ├── MIT_NAMIC_PNL_Logo.png │ │ └── NAMICLogo.png │ ├── ImageLabelCombine │ │ ├── CMakeLists.txt │ │ ├── ImageLabelCombine.cxx │ │ ├── ImageLabelCombine.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── ImageLabelCombineTest.cxx │ ├── LabelMapSmoothing │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── LabelMapSmoothingTest.nhdr.md5 │ │ │ │ └── LabelMapSmoothingTest.raw.gz.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadResampledOtsuSegmented.nhdr.md5 │ │ │ │ └── CTHeadResampledOtsuSegmented.raw.gz.md5 │ │ ├── LabelMapSmoothing.cxx │ │ ├── LabelMapSmoothing.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── LabelMapSmoothingTest.cxx │ ├── MaskScalarVolume │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ └── MaskedVolume.nrrd.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ ├── CTHeadAxial.raw.gz.md5 │ │ │ │ └── CTHeadAxialMask.nrrd.md5 │ │ ├── MaskScalarVolume.cxx │ │ ├── MaskScalarVolume.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── MaskScalarVolumeTest.cxx │ ├── MedianImageFilter │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── MedianImageFilterTest.nhdr.md5 │ │ │ │ └── MedianImageFilterTest.raw.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ └── CTHeadAxial.raw.gz.md5 │ │ ├── MedianImageFilter.cxx │ │ ├── MedianImageFilter.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── MedianImageFilterTest.cxx │ ├── MergeModels │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ └── sphereCube.vtp.md5 │ │ │ └── Input │ │ │ │ ├── cube.vtk.md5 │ │ │ │ ├── cube.vtp.md5 │ │ │ │ ├── sphere.vtk.md5 │ │ │ │ └── sphere.vtp.md5 │ │ ├── MergeModels.cxx │ │ ├── MergeModels.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ ├── MergeModelsTest.cxx │ │ │ └── run_MergeModelsTest.cmake │ ├── ModelMaker │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ └── Input │ │ │ │ ├── ModelMakerTest.mrml │ │ │ │ ├── helix-roi-lable2.nrrd.md5 │ │ │ │ ├── helixMask3Labels.mrml │ │ │ │ └── helixMask3Labels.nrrd.md5 │ │ ├── ModelMaker.cxx │ │ ├── ModelMaker.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── ModelMakerTest.cxx │ ├── ModelToLabelMap │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── OAS10001-128.mha.md5 │ │ │ │ └── OAS10001-255.mha.md5 │ │ │ └── Input │ │ │ │ ├── OAS10001-Transformed.vtp.md5 │ │ │ │ └── OAS10001.nii.gz.sha256 │ │ ├── ModelToLabelMap.cxx │ │ ├── ModelToLabelMap.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── ModelToLabelMapTest.cxx │ ├── MultiplyScalarVolumes │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── MultiplyScalarVolumesTest.1.nrrd.md5 │ │ │ │ └── MultiplyScalarVolumesTest.nrrd.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ └── CTHeadAxial.raw.gz.md5 │ │ ├── MultiplyScalarVolumes.cxx │ │ ├── MultiplyScalarVolumes.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── MultiplyScalarVolumesTest.cxx │ ├── N4ITKBiasFieldCorrection │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── he3biasfield.nii.gz.md5 │ │ │ │ └── he3corrected.nii.gz.md5 │ │ │ └── Input │ │ │ │ ├── he3mask.nii.gz.md5 │ │ │ │ └── he3volume.nii.gz.md5 │ │ ├── N4ITKBiasFieldCorrection.cxx │ │ ├── N4ITKBiasFieldCorrection.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── N4ITKBiasFieldCorrectionTest.cxx │ ├── OrientScalarVolume │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── OrientScalarVolumeTestAxial.nrrd.md5 │ │ │ │ ├── OrientScalarVolumeTestCoronal.nrrd.md5 │ │ │ │ └── OrientScalarVolumeTestSagittal.nrrd.md5 │ │ │ └── Input │ │ │ │ └── fixed.nrrd.md5 │ │ ├── OrientScalarVolume.cxx │ │ ├── OrientScalarVolume.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── OrientScalarVolumeTest.cxx │ ├── PETStandardUptakeValueComputation │ │ ├── CMakeLists.txt │ │ ├── PETStandardUptakeValueComputation.cxx │ │ ├── PETStandardUptakeValueComputation.xml │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── PETStandardUptakeValueComputationTest.cxx │ │ ├── itkDCMTKFileReader.cxx │ │ └── itkDCMTKFileReader.h │ ├── ProbeVolumeWithModel │ │ ├── CMakeLists.txt │ │ ├── ProbeVolumeWithModel.cxx │ │ ├── ProbeVolumeWithModel.xml │ │ └── Testing │ │ │ └── CMakeLists.txt │ ├── ROITest │ │ ├── CLIROITest.cxx │ │ ├── CLIROITest.xml │ │ └── CMakeLists.txt │ ├── ResampleDTIVolume │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── Brain_slice.nrrd.md5 │ │ │ │ ├── dt-helix-ref-BS.nrrd.md5 │ │ │ │ ├── dt-helix-ref-BSInterpolation.nrrd.md5 │ │ │ │ ├── dt-helix-ref-HField.nrrd.md5 │ │ │ │ ├── dt-helix-ref-Rotated.nrrd.md5 │ │ │ │ └── dt-helix-ref-RotationAndAffine.nrrd.md5 │ │ │ └── Input │ │ │ │ ├── FastNonrigidBSplineregistrationTransform.tfm │ │ │ │ ├── affine.tfm │ │ │ │ ├── deformationField.nrrd.md5 │ │ │ │ ├── dt-helix.nrrd.md5 │ │ │ │ ├── rotation.tfm │ │ │ │ └── rotationAndAffine.tfm │ │ ├── ResampleDTIVolume.cxx │ │ ├── ResampleDTIVolume.xml │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ ├── ResampleDTIVolumeTest.cxx │ │ │ ├── itkDifferenceDiffusionTensor3DImageFilter.h │ │ │ ├── itkDifferenceDiffusionTensor3DImageFilter.txx │ │ │ └── itkTestMainExtended.h │ │ ├── dtiprocessFiles │ │ │ ├── Readme │ │ │ ├── deformationfieldio.cxx │ │ │ ├── deformationfieldio.h │ │ │ ├── dtitypes.h │ │ │ ├── itkHFieldToDeformationFieldImageFilter.h │ │ │ └── itkHFieldToDeformationFieldImageFilter.txx │ │ ├── itkDiffusionTensor3DAbsCorrection.h │ │ ├── itkDiffusionTensor3DAffineTransform.h │ │ ├── itkDiffusionTensor3DAffineTransform.txx │ │ ├── itkDiffusionTensor3DBSplineInterpolateImageFunction.h │ │ ├── itkDiffusionTensor3DBSplineInterpolateImageFunction.txx │ │ ├── itkDiffusionTensor3DConstants.h │ │ ├── itkDiffusionTensor3DExtended.h │ │ ├── itkDiffusionTensor3DExtended.txx │ │ ├── itkDiffusionTensor3DFSAffineTransform.h │ │ ├── itkDiffusionTensor3DFSAffineTransform.txx │ │ ├── itkDiffusionTensor3DInterpolateImageFunction.h │ │ ├── itkDiffusionTensor3DInterpolateImageFunction.txx │ │ ├── itkDiffusionTensor3DInterpolateImageFunctionReimplementation.h │ │ ├── itkDiffusionTensor3DInterpolateImageFunctionReimplementation.txx │ │ ├── itkDiffusionTensor3DLinearInterpolateFunction.h │ │ ├── itkDiffusionTensor3DLinearInterpolateFunction.txx │ │ ├── itkDiffusionTensor3DMatrix3x3Transform.h │ │ ├── itkDiffusionTensor3DMatrix3x3Transform.txx │ │ ├── itkDiffusionTensor3DNearestCorrection.h │ │ ├── itkDiffusionTensor3DNearestNeighborInterpolateFunction.h │ │ ├── itkDiffusionTensor3DNearestNeighborInterpolateFunction.txx │ │ ├── itkDiffusionTensor3DNonRigidTransform.h │ │ ├── itkDiffusionTensor3DNonRigidTransform.txx │ │ ├── itkDiffusionTensor3DPPDAffineTransform.h │ │ ├── itkDiffusionTensor3DPPDAffineTransform.txx │ │ ├── itkDiffusionTensor3DRead.h │ │ ├── itkDiffusionTensor3DRead.txx │ │ ├── itkDiffusionTensor3DResample.h │ │ ├── itkDiffusionTensor3DResample.txx │ │ ├── itkDiffusionTensor3DRigidTransform.h │ │ ├── itkDiffusionTensor3DRigidTransform.txx │ │ ├── itkDiffusionTensor3DTransform.h │ │ ├── itkDiffusionTensor3DTransform.txx │ │ ├── itkDiffusionTensor3DWindowedSincInterpolateImageFunction.h │ │ ├── itkDiffusionTensor3DWindowedSincInterpolateImageFunction.txx │ │ ├── itkDiffusionTensor3DWrite.h │ │ ├── itkDiffusionTensor3DWrite.txx │ │ ├── itkDiffusionTensor3DZeroCorrection.h │ │ ├── itkMatrixExtended.h │ │ ├── itkMatrixExtended.txx │ │ ├── itkSeparateComponentsOfADiffusionTensorImage.h │ │ ├── itkSeparateComponentsOfADiffusionTensorImage.txx │ │ ├── itkTransformDeformationFieldFilter.h │ │ ├── itkTransformDeformationFieldFilter.txx │ │ ├── itkWarpTransform3D.h │ │ └── itkWarpTransform3D.txx │ ├── ResampleScalarVectorDWIVolume │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ └── Input │ │ │ │ ├── MRHeadResampled.nhdr.md5 │ │ │ │ ├── MRHeadResampled.raw.gz.md5 │ │ │ │ ├── MRHeadResampledBSplineInterpolationTest.nrrd.md5 │ │ │ │ ├── MRHeadResampledBSplineWSInterpolationTest.nrrd.md5 │ │ │ │ ├── MRHeadResampledHField.nrrd.md5 │ │ │ │ ├── MRHeadResampledHFieldTest.nrrd.md5 │ │ │ │ ├── MRHeadResampledRotationAndAffine.nrrd.md5 │ │ │ │ └── MRHeadResampledRotationNN.nrrd.md5 │ │ ├── ResampleScalarVectorDWIVolume.cxx │ │ ├── ResampleScalarVectorDWIVolume.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── ResampleScalarVectorDWIVolumeTest.cxx │ ├── ResampleScalarVolume │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── ResampleScalarVolumeTest.nhdr.md5 │ │ │ │ └── ResampleScalarVolumeTest.raw.gz.md5 │ │ │ └── Input │ │ │ │ ├── MRHeadResampled.nhdr.md5 │ │ │ │ └── MRHeadResampled.raw.gz.md5 │ │ ├── ResampleScalarVolume.cxx │ │ ├── ResampleScalarVolume.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── ResampleScalarVolumeTest.cxx │ ├── RobustStatisticsSegmenter │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ └── Input │ │ │ │ ├── grayscale-label.nrrd.md5 │ │ │ │ └── grayscale.nrrd.md5 │ │ ├── RobustStatisticsSegmenter.cxx │ │ ├── RobustStatisticsSegmenter.xml │ │ ├── SFLS.h │ │ ├── SFLSRobustStatSegmentor3DLabelMap_single.h │ │ ├── SFLSRobustStatSegmentor3DLabelMap_single.txx │ │ ├── SFLSSegmentor3D.h │ │ ├── SFLSSegmentor3D.txx │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── SFLSRobustStat3DTestConsole.cxx │ │ └── labelMapPreprocessor.h │ ├── SimpleRegionGrowingSegmentation │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── SimpleRegionGrowingSegmentationTest.nhdr.md5 │ │ │ │ └── SimpleRegionGrowingSegmentationTest.raw.gz.md5 │ │ │ └── Input │ │ │ │ ├── MRHeadResampled.nhdr.md5 │ │ │ │ └── MRHeadResampled.raw.gz.md5 │ │ ├── SimpleRegionGrowingSegmentation.cxx │ │ ├── SimpleRegionGrowingSegmentation.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── SimpleRegionGrowingSegmentationTest.cxx │ ├── SubtractScalarVolumes │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── SubtractScalarVolumesTest.nhdr.md5 │ │ │ │ └── SubtractScalarVolumesTest.raw.gz.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ ├── CTHeadAxial.raw.gz.md5 │ │ │ │ ├── CTHeadAxialDoubled.nhdr.md5 │ │ │ │ └── CTHeadAxialDoubled.raw.gz.md5 │ │ ├── SubtractScalarVolumes.cxx │ │ ├── SubtractScalarVolumes.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── SubtractScalarVolumesTest.cxx │ ├── TestGridTransformRegistration │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ └── CTHeadAxial.raw.gz.md5 │ │ ├── TestGridTransformRegistration.cxx │ │ ├── TestGridTransformRegistration.xml │ │ └── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── TestGridTransformRegistrationTest.cxx │ ├── ThresholdScalarVolume │ │ ├── CMakeLists.txt │ │ ├── Data │ │ │ ├── Baseline │ │ │ │ ├── ThresholdScalarVolumeTest.nhdr.md5 │ │ │ │ └── ThresholdScalarVolumeTest.raw.gz.md5 │ │ │ └── Input │ │ │ │ ├── CTHeadAxial.nhdr.md5 │ │ │ │ └── CTHeadAxial.raw.gz.md5 │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── ThresholdScalarVolumeTest.cxx │ │ ├── ThresholdScalarVolume.cxx │ │ └── ThresholdScalarVolume.xml │ └── VotingBinaryHoleFillingImageFilter │ │ ├── CMakeLists.txt │ │ ├── Data │ │ ├── Baseline │ │ │ ├── VotingBinaryHoleFillingImageFilterTest.nhdr.md5 │ │ │ └── VotingBinaryHoleFillingImageFilterTest.raw.gz.md5 │ │ └── Input │ │ │ ├── CTHeadResampledOtsuSegmented.nhdr.md5 │ │ │ └── CTHeadResampledOtsuSegmented.raw.gz.md5 │ │ ├── Testing │ │ ├── CMakeLists.txt │ │ └── VotingBinaryHoleFillingImageFilterTest.cxx │ │ ├── VotingBinaryHoleFillingImageFilter.cxx │ │ └── VotingBinaryHoleFillingImageFilter.xml ├── CMakeLists.txt ├── Core │ ├── CMakeLists.txt │ ├── EventBroker │ │ ├── Documentation │ │ │ ├── EventBroker.dox │ │ │ └── EventBroker.xml │ │ ├── qSlicerEventBrokerModule.cxx │ │ ├── qSlicerEventBrokerModule.h │ │ ├── qSlicerEventBrokerModuleWidget.cxx │ │ └── qSlicerEventBrokerModuleWidget.h │ ├── Resources │ │ └── UI │ │ │ └── qSlicerEventBrokerModuleWidget.ui │ ├── Testing │ │ ├── CMakeLists.txt │ │ ├── qSlicerCoreModuleFactoryTest1.cxx │ │ ├── qSlicerCoreModuleTest1.cxx │ │ └── qSlicerModulePanelTest2.cxx │ ├── qSlicerCoreModule.cxx │ ├── qSlicerCoreModule.h │ ├── qSlicerCoreModuleFactory.cxx │ └── qSlicerCoreModuleFactory.h ├── Loadable │ ├── Annotations │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ ├── Annotation.dox │ │ │ └── Annotations.xml │ │ ├── GUI │ │ │ ├── qSlicerAnnotationModulePropertyDialog.cxx │ │ │ ├── qSlicerAnnotationModulePropertyDialog.h │ │ │ ├── qSlicerAnnotationModulePropertyDialogWIP.cxx │ │ │ ├── qSlicerAnnotationModulePropertyDialogWIP.h │ │ │ ├── qSlicerAnnotationModuleReportDialog.cxx │ │ │ ├── qSlicerAnnotationModuleReportDialog.h │ │ │ ├── qSlicerAnnotationModuleSnapShotDialog.cxx │ │ │ ├── qSlicerAnnotationModuleSnapShotDialog.h │ │ │ ├── qSlicerAnnotationModuleWidget.cxx │ │ │ └── qSlicerAnnotationModuleWidget.h │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerAnnotationModuleLogic.cxx │ │ │ └── vtkSlicerAnnotationModuleLogic.h │ │ ├── MRML │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkMRMLAnnotationAngleNode.cxx │ │ │ ├── vtkMRMLAnnotationAngleNode.h │ │ │ ├── vtkMRMLAnnotationAngleStorageNode.cxx │ │ │ ├── vtkMRMLAnnotationAngleStorageNode.h │ │ │ ├── vtkMRMLAnnotationBidimensionalNode.cxx │ │ │ ├── vtkMRMLAnnotationBidimensionalNode.h │ │ │ ├── vtkMRMLAnnotationControlPointsNode.cxx │ │ │ ├── vtkMRMLAnnotationControlPointsNode.h │ │ │ ├── vtkMRMLAnnotationControlPointsStorageNode.cxx │ │ │ ├── vtkMRMLAnnotationControlPointsStorageNode.h │ │ │ ├── vtkMRMLAnnotationDisplayNode.cxx │ │ │ ├── vtkMRMLAnnotationDisplayNode.h │ │ │ ├── vtkMRMLAnnotationFiducialNode.cxx │ │ │ ├── vtkMRMLAnnotationFiducialNode.h │ │ │ ├── vtkMRMLAnnotationFiducialsStorageNode.cxx │ │ │ ├── vtkMRMLAnnotationFiducialsStorageNode.h │ │ │ ├── vtkMRMLAnnotationHierarchyNode.cxx │ │ │ ├── vtkMRMLAnnotationHierarchyNode.h │ │ │ ├── vtkMRMLAnnotationLineDisplayNode.cxx │ │ │ ├── vtkMRMLAnnotationLineDisplayNode.h │ │ │ ├── vtkMRMLAnnotationLinesNode.cxx │ │ │ ├── vtkMRMLAnnotationLinesNode.h │ │ │ ├── vtkMRMLAnnotationLinesStorageNode.cxx │ │ │ ├── vtkMRMLAnnotationLinesStorageNode.h │ │ │ ├── vtkMRMLAnnotationNode.cxx │ │ │ ├── vtkMRMLAnnotationNode.h │ │ │ ├── vtkMRMLAnnotationPointDisplayNode.cxx │ │ │ ├── vtkMRMLAnnotationPointDisplayNode.h │ │ │ ├── vtkMRMLAnnotationROINode.cxx │ │ │ ├── vtkMRMLAnnotationROINode.h │ │ │ ├── vtkMRMLAnnotationRulerNode.cxx │ │ │ ├── vtkMRMLAnnotationRulerNode.h │ │ │ ├── vtkMRMLAnnotationRulerStorageNode.cxx │ │ │ ├── vtkMRMLAnnotationRulerStorageNode.h │ │ │ ├── vtkMRMLAnnotationSnapshotNode.cxx │ │ │ ├── vtkMRMLAnnotationSnapshotNode.h │ │ │ ├── vtkMRMLAnnotationSnapshotStorageNode.cxx │ │ │ ├── vtkMRMLAnnotationSnapshotStorageNode.h │ │ │ ├── vtkMRMLAnnotationSplineNode.cxx │ │ │ ├── vtkMRMLAnnotationSplineNode.h │ │ │ ├── vtkMRMLAnnotationStickyNode.cxx │ │ │ ├── vtkMRMLAnnotationStickyNode.h │ │ │ ├── vtkMRMLAnnotationStorageNode.cxx │ │ │ ├── vtkMRMLAnnotationStorageNode.h │ │ │ ├── vtkMRMLAnnotationTextDisplayNode.cxx │ │ │ ├── vtkMRMLAnnotationTextDisplayNode.h │ │ │ ├── vtkMRMLAnnotationTextNode.cxx │ │ │ └── vtkMRMLAnnotationTextNode.h │ │ ├── MRMLDM │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkMRMLAnnotationAngleDisplayableManager.cxx │ │ │ ├── vtkMRMLAnnotationAngleDisplayableManager.h │ │ │ ├── vtkMRMLAnnotationBidimensionalDisplayableManager.cxx │ │ │ ├── vtkMRMLAnnotationBidimensionalDisplayableManager.h │ │ │ ├── vtkMRMLAnnotationClickCounter.cxx │ │ │ ├── vtkMRMLAnnotationClickCounter.h │ │ │ ├── vtkMRMLAnnotationDisplayableManager.cxx │ │ │ ├── vtkMRMLAnnotationDisplayableManager.h │ │ │ ├── vtkMRMLAnnotationDisplayableManagerHelper.cxx │ │ │ ├── vtkMRMLAnnotationDisplayableManagerHelper.h │ │ │ ├── vtkMRMLAnnotationFiducialDisplayableManager.cxx │ │ │ ├── vtkMRMLAnnotationFiducialDisplayableManager.h │ │ │ ├── vtkMRMLAnnotationROIDisplayableManager.cxx │ │ │ ├── vtkMRMLAnnotationROIDisplayableManager.h │ │ │ ├── vtkMRMLAnnotationRulerDisplayableManager.cxx │ │ │ ├── vtkMRMLAnnotationRulerDisplayableManager.h │ │ │ ├── vtkMRMLAnnotationSplineDisplayableManager.cxx │ │ │ ├── vtkMRMLAnnotationSplineDisplayableManager.h │ │ │ ├── vtkMRMLAnnotationStickyDisplayableManager.cxx │ │ │ ├── vtkMRMLAnnotationStickyDisplayableManager.h │ │ │ ├── vtkMRMLAnnotationTextDisplayableManager.cxx │ │ │ └── vtkMRMLAnnotationTextDisplayableManager.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── Annotation.png │ │ │ │ ├── AnnotationAddPointList.png │ │ │ │ ├── AnnotationAngle.png │ │ │ │ ├── AnnotationAngleWithArrow.png │ │ │ │ ├── AnnotationBidimensional.png │ │ │ │ ├── AnnotationBidimensionalWithArrow.png │ │ │ │ ├── AnnotationCancel.png │ │ │ │ ├── AnnotationDelete.png │ │ │ │ ├── AnnotationDeselectAll.png │ │ │ │ ├── AnnotationDistance.png │ │ │ │ ├── AnnotationDistanceWithArrow.png │ │ │ │ ├── AnnotationEditAngle.png │ │ │ │ ├── AnnotationEditBidimensional.png │ │ │ │ ├── AnnotationEditDistance.png │ │ │ │ ├── AnnotationEditNote.png │ │ │ │ ├── AnnotationEditPoint.png │ │ │ │ ├── AnnotationEditPolyline.png │ │ │ │ ├── AnnotationEditROI.png │ │ │ │ ├── AnnotationEditSpline.png │ │ │ │ ├── AnnotationEditText.png │ │ │ │ ├── AnnotationInformation.png │ │ │ │ ├── AnnotationInvisible.png │ │ │ │ ├── AnnotationLayout.png │ │ │ │ ├── AnnotationLine.png │ │ │ │ ├── AnnotationLock.png │ │ │ │ ├── AnnotationMouseMode.png │ │ │ │ ├── AnnotationMouseModeInspect.png │ │ │ │ ├── AnnotationMouseModePick.png │ │ │ │ ├── AnnotationMouseModePlace.png │ │ │ │ ├── AnnotationMouseModeTransform.png │ │ │ │ ├── AnnotationMouseModeWindowLevel.png │ │ │ │ ├── AnnotationMoveDown.png │ │ │ │ ├── AnnotationMoveUp.png │ │ │ │ ├── AnnotationNote.png │ │ │ │ ├── AnnotationOkDone.png │ │ │ │ ├── AnnotationOldMousePick.png │ │ │ │ ├── AnnotationOldMousePlace.png │ │ │ │ ├── AnnotationPause.png │ │ │ │ ├── AnnotationPlayForward.png │ │ │ │ ├── AnnotationPoint.png │ │ │ │ ├── AnnotationPointWithArrow.png │ │ │ │ ├── AnnotationPoints.png │ │ │ │ ├── AnnotationPolyline.png │ │ │ │ ├── AnnotationPrint.png │ │ │ │ ├── AnnotationROI.png │ │ │ │ ├── AnnotationROIWithArrow.png │ │ │ │ ├── AnnotationReport.png │ │ │ │ ├── AnnotationResetView.png │ │ │ │ ├── AnnotationSaveAnnotations.png │ │ │ │ ├── AnnotationSaveScene.png │ │ │ │ ├── AnnotationScreenShot.png │ │ │ │ ├── AnnotationSelectAll.png │ │ │ │ ├── AnnotationSpline.png │ │ │ │ ├── AnnotationText.png │ │ │ │ ├── AnnotationTextWithArrow.png │ │ │ │ ├── AnnotationUnlock.png │ │ │ │ ├── AnnotationVisibility.png │ │ │ │ ├── AnnotationVolumeInformationExtractor.png │ │ │ │ ├── AnnotationVolumesModule.png │ │ │ │ ├── LayoutOneUp3DView.png │ │ │ │ ├── LayoutOneUpGreenSliceView.png │ │ │ │ ├── LayoutOneUpRedSliceView.png │ │ │ │ ├── LayoutOneUpYellowSliceView.png │ │ │ │ ├── SnapshotRestore.png │ │ │ │ ├── UPenn_logo.png │ │ │ │ ├── ViewCamera.png │ │ │ │ └── upennpalmtree.png │ │ │ ├── UI │ │ │ │ ├── qSlicerAnnotationModuleIOOptionsWidget.ui │ │ │ │ ├── qSlicerAnnotationModulePropertyDialog.ui │ │ │ │ ├── qSlicerAnnotationModulePropertyDialogWIP.ui │ │ │ │ ├── qSlicerAnnotationModuleReportDialog.ui │ │ │ │ └── qSlicerAnnotationModuleWidget.ui │ │ │ └── qSlicerAnnotationModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ │ ├── AnnotationsSubjectHierarchyPlugin.py │ │ │ └── CMakeLists.txt │ │ ├── Testing │ │ │ ├── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── TestAnnAngleWidget3D.cxx │ │ │ │ ├── TestAnnotationWidgetsStandalone.cxx │ │ │ │ ├── qMRMLAnnotationROIWidgetTest1.cxx │ │ │ │ ├── qMRMLSceneAnnotationModelAndAnnotationTreeWidgetTest1.cxx │ │ │ │ ├── qSlicerAnnotationModuleAnnotationPropertyDialogTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationAngleNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationAngleStorageNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationControlPointsNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationControlPointsStorageNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationDisplayNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationDisplayNodeTest2.cxx │ │ │ │ ├── vtkMRMLAnnotationDisplayableManagerTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationDisplayableManagerTest2.cxx │ │ │ │ ├── vtkMRMLAnnotationFiducialNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationFiducialsStorageNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationLineDisplayNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationLinesNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationLinesStorageNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationNodesUndoTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationPointDisplayNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationROINodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationRulerDisplayableManagerTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationRulerNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationRulerStorageNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationStorageNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationTextDisplayNodeTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationTextDisplayableManagerTest1.cxx │ │ │ │ ├── vtkMRMLAnnotationTextNodeAndWidgetTest1.cxx │ │ │ │ ├── vtkSlicerAnnotationModuleLogicImportSceneTest.cxx │ │ │ │ └── vtkSlicerAnnotationModuleLogicTest1.cxx │ │ │ ├── Data │ │ │ │ └── Input │ │ │ │ │ ├── Fiducials List.acsv │ │ │ │ │ ├── M.acsv │ │ │ │ │ ├── Master Scene View.png │ │ │ │ │ └── ruler.mrml │ │ │ └── Python │ │ │ │ ├── AnnotationsTestingAddManyFiducials.py │ │ │ │ ├── AnnotationsTestingAddManyROIs.py │ │ │ │ ├── AnnotationsTestingAddManyRulers.py │ │ │ │ ├── AnnotationsTestingFiducialWithSceneViewRestore.py │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── LoadAnnotationRulerScene.py │ │ │ │ └── RemoveAnnotationsIDFromSelectionNode.py │ │ ├── VTKWidgets │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkAnnotationBidimensionalRepresentation.cxx │ │ │ ├── vtkAnnotationBidimensionalRepresentation.h │ │ │ ├── vtkAnnotationBidimensionalWidget.cxx │ │ │ ├── vtkAnnotationBidimensionalWidget.h │ │ │ ├── vtkAnnotationGlyphSource2D.cxx │ │ │ ├── vtkAnnotationGlyphSource2D.h │ │ │ ├── vtkAnnotationROIRepresentation.cxx │ │ │ ├── vtkAnnotationROIRepresentation.h │ │ │ ├── vtkAnnotationROIRepresentation2D.cxx │ │ │ ├── vtkAnnotationROIRepresentation2D.h │ │ │ ├── vtkAnnotationROIWidget.cxx │ │ │ ├── vtkAnnotationROIWidget.h │ │ │ ├── vtkAnnotationROIWidget2D.cxx │ │ │ ├── vtkAnnotationROIWidget2D.h │ │ │ ├── vtkAnnotationRulerRepresentation.cxx │ │ │ ├── vtkAnnotationRulerRepresentation.h │ │ │ ├── vtkAnnotationRulerRepresentation3D.cxx │ │ │ ├── vtkAnnotationRulerRepresentation3D.h │ │ │ ├── vtkAnnotationRulerWidget.cxx │ │ │ └── vtkAnnotationRulerWidget.h │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLAnnotationFiducialProjectionPropertyWidgetPlugin.cxx │ │ │ │ ├── qMRMLAnnotationFiducialProjectionPropertyWidgetPlugin.h │ │ │ │ ├── qMRMLAnnotationROIWidgetPlugin.cxx │ │ │ │ ├── qMRMLAnnotationROIWidgetPlugin.h │ │ │ │ ├── qMRMLAnnotationRulerProjectionPropertyWidgetPlugin.cxx │ │ │ │ ├── qMRMLAnnotationRulerProjectionPropertyWidgetPlugin.h │ │ │ │ ├── qMRMLAnnotationTreeViewPlugin.cxx │ │ │ │ ├── qMRMLAnnotationTreeViewPlugin.h │ │ │ │ ├── qSlicerAnnotationModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerAnnotationModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerAnnotationModuleWidgetsPlugin.cxx │ │ │ │ └── qSlicerAnnotationModuleWidgetsPlugin.h │ │ │ ├── Resources │ │ │ │ └── UI │ │ │ │ │ ├── qMRMLAnnotationDisplayNodePointPropertyWidget.ui │ │ │ │ │ ├── qMRMLAnnotationFiducialProjectionPropertyWidget.ui │ │ │ │ │ ├── qMRMLAnnotationROIWidget.ui │ │ │ │ │ └── qMRMLAnnotationRulerProjectionPropertyWidget.ui │ │ │ ├── qMRMLAnnotationDisplayNodePointPropertyWidget.cxx │ │ │ ├── qMRMLAnnotationDisplayNodePointPropertyWidget.h │ │ │ ├── qMRMLAnnotationDisplayNodePointPropertyWidget_p.h │ │ │ ├── qMRMLAnnotationDisplayNodePropertyWidget.cxx │ │ │ ├── qMRMLAnnotationDisplayNodePropertyWidget.h │ │ │ ├── qMRMLAnnotationFiducialProjectionPropertyWidget.cxx │ │ │ ├── qMRMLAnnotationFiducialProjectionPropertyWidget.h │ │ │ ├── qMRMLAnnotationROIWidget.cxx │ │ │ ├── qMRMLAnnotationROIWidget.h │ │ │ ├── qMRMLAnnotationRulerProjectionPropertyWidget.cxx │ │ │ ├── qMRMLAnnotationRulerProjectionPropertyWidget.h │ │ │ ├── qMRMLAnnotationTreeView.cxx │ │ │ ├── qMRMLAnnotationTreeView.h │ │ │ ├── qMRMLSceneAnnotationModel.cxx │ │ │ ├── qMRMLSceneAnnotationModel.h │ │ │ └── qMRMLSceneAnnotationModel_p.h │ │ ├── qSlicerAnnotationsIOOptionsWidget.cxx │ │ ├── qSlicerAnnotationsIOOptionsWidget.h │ │ ├── qSlicerAnnotationsModule.cxx │ │ ├── qSlicerAnnotationsModule.h │ │ ├── qSlicerAnnotationsReader.cxx │ │ ├── qSlicerAnnotationsReader.h │ │ ├── qSlicerFiducialsReader.cxx │ │ └── qSlicerFiducialsReader.h │ ├── CMakeLists.txt │ ├── Cameras │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ ├── Cameras.dox │ │ │ └── Cameras.xml │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerCamerasModuleLogic.cxx │ │ │ └── vtkSlicerCamerasModuleLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ └── Cameras.png │ │ │ ├── UI │ │ │ │ └── qSlicerCamerasModuleWidget.ui │ │ │ └── qSlicerCamerasModule.qrc │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qSlicerCamerasModuleWidgetTest1.cxx │ │ │ │ └── vtkSlicerCamerasModuleLogicCopyImportedCamerasTest.cxx │ │ ├── qSlicerCamerasModule.cxx │ │ ├── qSlicerCamerasModule.h │ │ ├── qSlicerCamerasModuleWidget.cxx │ │ └── qSlicerCamerasModuleWidget.h │ ├── Colors │ │ ├── CMakeLists.txt │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── Testing │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Cxx │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ └── vtkSlicerColorLogicTest1.cxx │ │ │ ├── vtkSlicerColorLogic.cxx │ │ │ └── vtkSlicerColorLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── Colors.png │ │ │ │ └── SlicerCopyColor.png │ │ │ ├── UI │ │ │ │ └── qSlicerColorsModuleWidget.ui │ │ │ └── qSlicerColorsModule.qrc │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ ├── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── qSlicerColorsModuleWidgetTest1.cxx │ │ │ └── Python │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── ColorsScalarBarSelfTest.py │ │ │ │ └── CustomColorTableSceneViewRestoreTestBug3992.py │ │ ├── VTKWidgets │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerScalarBarActor.cxx │ │ │ └── vtkSlicerScalarBarActor.h │ │ ├── qSlicerColorsModule.cxx │ │ ├── qSlicerColorsModule.h │ │ ├── qSlicerColorsModuleWidget.cxx │ │ ├── qSlicerColorsModuleWidget.h │ │ ├── qSlicerColorsReader.cxx │ │ └── qSlicerColorsReader.h │ ├── CropVolume │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ └── CropVolume.dox │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerCropVolumeLogic.cxx │ │ │ └── vtkSlicerCropVolumeLogic.h │ │ ├── MRML │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkMRMLCropVolumeParametersNode.cxx │ │ │ └── vtkMRMLCropVolumeParametersNode.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── CropVolume.png │ │ │ │ └── LoadVolume.png │ │ │ ├── UI │ │ │ │ └── qSlicerCropVolumeModuleWidget.ui │ │ │ └── qSlicerCropVolumeModule.qrc │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ ├── Python │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── CropVolumeSelfTest.py │ │ │ └── vtkMRMLCropVolumeParametersNodeTest1.cxx │ │ ├── qSlicerCropVolumeModule.cxx │ │ ├── qSlicerCropVolumeModule.h │ │ ├── qSlicerCropVolumeModuleWidget.cxx │ │ └── qSlicerCropVolumeModuleWidget.h │ ├── Data │ │ ├── CMakeLists.txt │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerDataModuleLogic.cxx │ │ │ └── vtkSlicerDataModuleLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── Data.png │ │ │ │ └── SubjectHierarchy.png │ │ │ ├── UI │ │ │ │ ├── qSlicerDataModuleWidget.ui │ │ │ │ └── qSlicerSceneIOOptionsWidget.ui │ │ │ └── qSlicerDataModule.qrc │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── vtkSlicerDataLogicAutoRemoveTest.cxx │ │ ├── qSlicerDataModule.cxx │ │ ├── qSlicerDataModule.h │ │ ├── qSlicerDataModuleWidget.cxx │ │ ├── qSlicerDataModuleWidget.h │ │ ├── qSlicerSceneIOOptionsWidget.cxx │ │ ├── qSlicerSceneIOOptionsWidget.h │ │ ├── qSlicerSceneReader.cxx │ │ ├── qSlicerSceneReader.h │ │ ├── qSlicerSceneWriter.cxx │ │ └── qSlicerSceneWriter.h │ ├── DoubleArrays │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ └── DoubleArrays.dox │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerDoubleArraysLogic.cxx │ │ │ └── vtkSlicerDoubleArraysLogic.h │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── vtkSlicerDoubleArraysLogicAddFileTest.cxx │ │ ├── qSlicerDoubleArraysModule.cxx │ │ ├── qSlicerDoubleArraysModule.h │ │ ├── qSlicerDoubleArraysReader.cxx │ │ └── qSlicerDoubleArraysReader.h │ ├── Markups │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ ├── Markups.dox │ │ │ └── Markups.xml │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerMarkupsLogic.cxx │ │ │ └── vtkSlicerMarkupsLogic.h │ │ ├── MRML │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkCurveGenerator.cxx │ │ │ ├── vtkCurveGenerator.h │ │ │ ├── vtkLinearSpline.cxx │ │ │ ├── vtkLinearSpline.h │ │ │ ├── vtkMRMLMarkupsAngleNode.cxx │ │ │ ├── vtkMRMLMarkupsAngleNode.h │ │ │ ├── vtkMRMLMarkupsClosedCurveNode.cxx │ │ │ ├── vtkMRMLMarkupsClosedCurveNode.h │ │ │ ├── vtkMRMLMarkupsCurveNode.cxx │ │ │ ├── vtkMRMLMarkupsCurveNode.h │ │ │ ├── vtkMRMLMarkupsDisplayNode.cxx │ │ │ ├── vtkMRMLMarkupsDisplayNode.h │ │ │ ├── vtkMRMLMarkupsFiducialDisplayNode.cxx │ │ │ ├── vtkMRMLMarkupsFiducialDisplayNode.h │ │ │ ├── vtkMRMLMarkupsFiducialNode.cxx │ │ │ ├── vtkMRMLMarkupsFiducialNode.h │ │ │ ├── vtkMRMLMarkupsFiducialStorageNode.cxx │ │ │ ├── vtkMRMLMarkupsFiducialStorageNode.h │ │ │ ├── vtkMRMLMarkupsLineNode.cxx │ │ │ ├── vtkMRMLMarkupsLineNode.h │ │ │ ├── vtkMRMLMarkupsNode.cxx │ │ │ ├── vtkMRMLMarkupsNode.h │ │ │ ├── vtkParametricPolynomialApproximation.cxx │ │ │ ├── vtkParametricPolynomialApproximation.h │ │ │ ├── vtkSlicerDijkstraGraphGeodesicPath.cxx │ │ │ └── vtkSlicerDijkstraGraphGeodesicPath.h │ │ ├── MRMLDM │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkMRMLMarkupsDisplayableManager.cxx │ │ │ ├── vtkMRMLMarkupsDisplayableManager.h │ │ │ ├── vtkMRMLMarkupsDisplayableManagerHelper.cxx │ │ │ └── vtkMRMLMarkupsDisplayableManagerHelper.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── Ellipsis.png │ │ │ │ ├── Markups.png │ │ │ │ ├── MarkupsAddFiducial.png │ │ │ │ ├── MarkupsAngleMouseModePlace.png │ │ │ │ ├── MarkupsAngleMouseModePlaceAdd.png │ │ │ │ ├── MarkupsClosedCurveMouseModePlace.png │ │ │ │ ├── MarkupsClosedCurveMouseModePlaceAdd.png │ │ │ │ ├── MarkupsCurveMouseModePlace.png │ │ │ │ ├── MarkupsCurveMouseModePlaceAdd.png │ │ │ │ ├── MarkupsDelete.png │ │ │ │ ├── MarkupsDeleteAllRows.png │ │ │ │ ├── MarkupsDeleteSelectedRows.png │ │ │ │ ├── MarkupsDeselectAll.png │ │ │ │ ├── MarkupsLineMouseModePlace.png │ │ │ │ ├── MarkupsLineMouseModePlaceAdd.png │ │ │ │ ├── MarkupsListLock.png │ │ │ │ ├── MarkupsListUnlock.png │ │ │ │ ├── MarkupsMouseModePlace.png │ │ │ │ ├── MarkupsMouseModePlaceAdd.png │ │ │ │ ├── MarkupsMoveDown.png │ │ │ │ ├── MarkupsMoveUp.png │ │ │ │ ├── MarkupsSelected.png │ │ │ │ ├── MarkupsSelectedOrUnselected.png │ │ │ │ └── MarkupsUnselected.png │ │ │ ├── UI │ │ │ │ ├── qSlicerMarkupsModule.ui │ │ │ │ └── qSlicerMarkupsSettingsPanel.ui │ │ │ └── qSlicerMarkupsModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ │ ├── CMakeLists.txt │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ ├── MarkupsAngle.png │ │ │ │ │ ├── MarkupsClosedCurve.png │ │ │ │ │ ├── MarkupsFiducial.png │ │ │ │ │ ├── MarkupsLine.png │ │ │ │ │ └── MarkupsOpenCurve.png │ │ │ │ └── qSlicerMarkupsSubjectHierarchyPlugins.qrc │ │ │ ├── qSlicerSubjectHierarchyMarkupsPlugin.cxx │ │ │ └── qSlicerSubjectHierarchyMarkupsPlugin.h │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ ├── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── vtkMRMLMarkupsDisplayNodeTest1.cxx │ │ │ │ ├── vtkMRMLMarkupsFiducialNodeTest1.cxx │ │ │ │ ├── vtkMRMLMarkupsFiducialStorageNodeTest1.cxx │ │ │ │ ├── vtkMRMLMarkupsFiducialStorageNodeTest2.cxx │ │ │ │ ├── vtkMRMLMarkupsFiducialStorageNodeTest3.cxx │ │ │ │ ├── vtkMRMLMarkupsNodeTest1.cxx │ │ │ │ ├── vtkMRMLMarkupsNodeTest2.cxx │ │ │ │ ├── vtkMRMLMarkupsNodeTest3.cxx │ │ │ │ ├── vtkMRMLMarkupsStorageNodeTest1.cxx │ │ │ │ ├── vtkMarkupsAnnotationSceneTest.cxx │ │ │ │ ├── vtkSlicerMarkupsLogicTest1.cxx │ │ │ │ ├── vtkSlicerMarkupsLogicTest2.cxx │ │ │ │ └── vtkSlicerMarkupsLogicTest3.cxx │ │ │ ├── Data │ │ │ │ └── Input │ │ │ │ │ ├── AnnotationTest │ │ │ │ │ ├── AnnotationFiducialsTest.mrml │ │ │ │ │ ├── F.acsv │ │ │ │ │ └── F_1.acsv │ │ │ │ │ ├── slicer3.fcsv │ │ │ │ │ └── slicer4.acsv │ │ │ └── Python │ │ │ │ ├── AddManyMarkupsFiducialTest.py │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── MarkupsInCompareViewersSelfTest.py │ │ │ │ ├── MarkupsInViewsSelfTest.py │ │ │ │ ├── MarkupsSceneViewRestoreTestManyLists.py │ │ │ │ ├── MarkupsSceneViewRestoreTestSimple.py │ │ │ │ └── NeurosurgicalPlanningTutorialMarkupsSelfTest.py │ │ ├── VTKWidgets │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkMarkupsGlyphSource2D.cxx │ │ │ ├── vtkMarkupsGlyphSource2D.h │ │ │ ├── vtkSlicerAngleRepresentation2D.cxx │ │ │ ├── vtkSlicerAngleRepresentation2D.h │ │ │ ├── vtkSlicerAngleRepresentation3D.cxx │ │ │ ├── vtkSlicerAngleRepresentation3D.h │ │ │ ├── vtkSlicerAngleWidget.cxx │ │ │ ├── vtkSlicerAngleWidget.h │ │ │ ├── vtkSlicerClosedCurveWidget.cxx │ │ │ ├── vtkSlicerClosedCurveWidget.h │ │ │ ├── vtkSlicerCurveRepresentation2D.cxx │ │ │ ├── vtkSlicerCurveRepresentation2D.h │ │ │ ├── vtkSlicerCurveRepresentation3D.cxx │ │ │ ├── vtkSlicerCurveRepresentation3D.h │ │ │ ├── vtkSlicerCurveWidget.cxx │ │ │ ├── vtkSlicerCurveWidget.h │ │ │ ├── vtkSlicerLineRepresentation2D.cxx │ │ │ ├── vtkSlicerLineRepresentation2D.h │ │ │ ├── vtkSlicerLineRepresentation3D.cxx │ │ │ ├── vtkSlicerLineRepresentation3D.h │ │ │ ├── vtkSlicerLineWidget.cxx │ │ │ ├── vtkSlicerLineWidget.h │ │ │ ├── vtkSlicerMarkupsWidget.cxx │ │ │ ├── vtkSlicerMarkupsWidget.h │ │ │ ├── vtkSlicerMarkupsWidgetRepresentation.cxx │ │ │ ├── vtkSlicerMarkupsWidgetRepresentation.h │ │ │ ├── vtkSlicerMarkupsWidgetRepresentation2D.cxx │ │ │ ├── vtkSlicerMarkupsWidgetRepresentation2D.h │ │ │ ├── vtkSlicerMarkupsWidgetRepresentation3D.cxx │ │ │ ├── vtkSlicerMarkupsWidgetRepresentation3D.h │ │ │ ├── vtkSlicerPointsRepresentation2D.cxx │ │ │ ├── vtkSlicerPointsRepresentation2D.h │ │ │ ├── vtkSlicerPointsRepresentation3D.cxx │ │ │ ├── vtkSlicerPointsRepresentation3D.h │ │ │ ├── vtkSlicerPointsWidget.cxx │ │ │ └── vtkSlicerPointsWidget.h │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLMarkupsDisplayNodeWidgetPlugin.cxx │ │ │ │ ├── qMRMLMarkupsDisplayNodeWidgetPlugin.h │ │ │ │ ├── qMRMLMarkupsFiducialProjectionPropertyWidgetPlugin.cxx │ │ │ │ ├── qMRMLMarkupsFiducialProjectionPropertyWidgetPlugin.h │ │ │ │ ├── qSlicerMarkupsModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerMarkupsModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerMarkupsModuleWidgetsPlugin.cxx │ │ │ │ ├── qSlicerMarkupsModuleWidgetsPlugin.h │ │ │ │ ├── qSlicerMarkupsPlaceWidgetPlugin.cxx │ │ │ │ ├── qSlicerMarkupsPlaceWidgetPlugin.h │ │ │ │ ├── qSlicerSimpleMarkupsWidgetPlugin.cxx │ │ │ │ └── qSlicerSimpleMarkupsWidgetPlugin.h │ │ │ ├── Resources │ │ │ │ └── UI │ │ │ │ │ ├── qMRMLMarkupsDisplayNodeWidget.ui │ │ │ │ │ ├── qMRMLMarkupsFiducialProjectionPropertyWidget.ui │ │ │ │ │ ├── qSlicerMarkupsPlaceWidget.ui │ │ │ │ │ └── qSlicerSimpleMarkupsWidget.ui │ │ │ ├── Testing │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Cxx │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── qSlicerMarkupsModuleWidgetsCxxTests.h │ │ │ │ │ └── qSlicerSimpleMarkupsWidgetTest1.cxx │ │ │ │ └── Python │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ └── MarkupsWidgetsSelfTest.py │ │ │ ├── qMRMLMarkupsDisplayNodeWidget.cxx │ │ │ ├── qMRMLMarkupsDisplayNodeWidget.h │ │ │ ├── qMRMLMarkupsFiducialProjectionPropertyWidget.cxx │ │ │ ├── qMRMLMarkupsFiducialProjectionPropertyWidget.h │ │ │ ├── qSlicerMarkupsPlaceWidget.cxx │ │ │ ├── qSlicerMarkupsPlaceWidget.h │ │ │ ├── qSlicerSimpleMarkupsWidget.cxx │ │ │ └── qSlicerSimpleMarkupsWidget.h │ │ ├── qSlicerMarkupsModule.cxx │ │ ├── qSlicerMarkupsModule.h │ │ ├── qSlicerMarkupsModuleWidget.cxx │ │ ├── qSlicerMarkupsModuleWidget.h │ │ ├── qSlicerMarkupsReader.cxx │ │ ├── qSlicerMarkupsReader.h │ │ ├── qSlicerMarkupsSettingsPanel.cxx │ │ └── qSlicerMarkupsSettingsPanel.h │ ├── Models │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ ├── Models.dox │ │ │ └── Models.xml │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerModelsLogic.cxx │ │ │ └── vtkSlicerModelsLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── Large │ │ │ │ │ ├── SlicerAddModel.png │ │ │ │ │ └── SlicerModels.png │ │ │ │ ├── Medium │ │ │ │ │ ├── SlicerAddModel.png │ │ │ │ │ └── SlicerModels.png │ │ │ │ ├── Small │ │ │ │ │ ├── SlicerAddModel.png │ │ │ │ │ └── SlicerModels.png │ │ │ │ └── XLarge │ │ │ │ │ ├── SlicerAddModel.png │ │ │ │ │ └── SlicerModels.png │ │ │ ├── UI │ │ │ │ ├── qSlicerModelsIOOptionsWidget.ui │ │ │ │ ├── qSlicerModelsModuleWidget.ui │ │ │ │ └── qSlicerScalarOverlayIOOptionsWidget.ui │ │ │ └── qSlicerModelsModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ │ ├── CMakeLists.txt │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ └── Model.png │ │ │ │ └── qSlicerModelsSubjectHierarchyPlugins.qrc │ │ │ ├── qSlicerSubjectHierarchyModelsPlugin.cxx │ │ │ └── qSlicerSubjectHierarchyModelsPlugin.h │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qSlicerModelsModuleWidgetTest.cxx │ │ │ │ ├── qSlicerModelsModuleWidgetTest1.cxx │ │ │ │ ├── qSlicerModelsModuleWidgetTestScene.cxx │ │ │ │ └── vtkSlicerModelsLogicAddFileTest.cxx │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLModelDisplayNodeWidgetPlugin.cxx │ │ │ │ ├── qMRMLModelDisplayNodeWidgetPlugin.h │ │ │ │ ├── qSlicerModelsWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerModelsWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerModelsWidgetsPlugin.cxx │ │ │ │ └── qSlicerModelsWidgetsPlugin.h │ │ │ ├── Resources │ │ │ │ └── UI │ │ │ │ │ └── qMRMLModelDisplayNodeWidget.ui │ │ │ ├── Testing │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Cxx │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── qMRMLModelDisplayNodeWidgetTest1.cxx │ │ │ │ │ └── qMRMLModelDisplayNodeWidgetTest2.cxx │ │ │ ├── qMRMLModelDisplayNodeWidget.cxx │ │ │ └── qMRMLModelDisplayNodeWidget.h │ │ ├── qSlicerModelsIOOptionsWidget.cxx │ │ ├── qSlicerModelsIOOptionsWidget.h │ │ ├── qSlicerModelsModule.cxx │ │ ├── qSlicerModelsModule.h │ │ ├── qSlicerModelsModuleWidget.cxx │ │ ├── qSlicerModelsModuleWidget.h │ │ ├── qSlicerModelsReader.cxx │ │ ├── qSlicerModelsReader.h │ │ ├── qSlicerScalarOverlayIOOptionsWidget.cxx │ │ ├── qSlicerScalarOverlayIOOptionsWidget.h │ │ ├── qSlicerScalarOverlayReader.cxx │ │ └── qSlicerScalarOverlayReader.h │ ├── Plots │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ └── Plots.dox │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerPlotsLogic.cxx │ │ │ └── vtkSlicerPlotsLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── Large │ │ │ │ │ └── SlicerPlotSeries.png │ │ │ │ ├── Medium │ │ │ │ │ └── SlicerPlotSeries.png │ │ │ │ ├── Plots.png │ │ │ │ ├── Small │ │ │ │ │ └── SlicerPlotSeries.png │ │ │ │ ├── XLarge │ │ │ │ │ └── SlicerPlotSeries.png │ │ │ │ └── XSmall │ │ │ │ │ └── SlicerPlotSeries.png │ │ │ ├── UI │ │ │ │ └── qSlicerPlotsModuleWidget.ui │ │ │ └── qSlicerPlotsModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ │ ├── CMakeLists.txt │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ └── Plot.png │ │ │ │ └── qSlicerPlotsSubjectHierarchyPlugins.qrc │ │ │ ├── qSlicerSubjectHierarchyPlotsPlugin.cxx │ │ │ └── qSlicerSubjectHierarchyPlotsPlugin.h │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Python │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── PlotsSelfTest.py │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLPlotChartPropertiesWidgetPlugin.cxx │ │ │ │ ├── qMRMLPlotChartPropertiesWidgetPlugin.h │ │ │ │ ├── qMRMLPlotSeriesPropertiesWidgetPlugin.cxx │ │ │ │ ├── qMRMLPlotSeriesPropertiesWidgetPlugin.h │ │ │ │ ├── qSlicerPlotsModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerPlotsModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerPlotsModuleWidgetsPlugin.cxx │ │ │ │ └── qSlicerPlotsModuleWidgetsPlugin.h │ │ │ ├── Resources │ │ │ │ └── UI │ │ │ │ │ ├── qMRMLPlotChartPropertiesWidget.ui │ │ │ │ │ └── qMRMLPlotSeriesPropertiesWidget.ui │ │ │ ├── Testing │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Cxx │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── qMRMLPlotPropertiesWidgetTest1.cxx │ │ │ │ │ └── qSlicerPlotsModuleWidgetsCxxTests.h │ │ │ ├── qMRMLPlotChartPropertiesWidget.cxx │ │ │ ├── qMRMLPlotChartPropertiesWidget.h │ │ │ ├── qMRMLPlotChartPropertiesWidget_p.h │ │ │ ├── qMRMLPlotSeriesPropertiesWidget.cxx │ │ │ ├── qMRMLPlotSeriesPropertiesWidget.h │ │ │ └── qMRMLPlotSeriesPropertiesWidget_p.h │ │ ├── qSlicerPlotsModule.cxx │ │ ├── qSlicerPlotsModule.h │ │ ├── qSlicerPlotsModuleWidget.cxx │ │ └── qSlicerPlotsModuleWidget.h │ ├── Reformat │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ ├── Reformat.dox │ │ │ └── Reformat.xml │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerReformatLogic.cxx │ │ │ └── vtkSlicerReformatLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ └── Reformat.png │ │ │ ├── UI │ │ │ │ └── qSlicerReformatModuleWidget.ui │ │ │ └── qSlicerReformatModule.qrc │ │ ├── qSlicerReformatModule.cxx │ │ ├── qSlicerReformatModule.h │ │ ├── qSlicerReformatModuleWidget.cxx │ │ └── qSlicerReformatModuleWidget.h │ ├── SceneViews │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ ├── SceneViews.dox │ │ │ └── SceneViews.xml │ │ ├── GUI │ │ │ ├── qSlicerSceneViewsModuleDialog.cxx │ │ │ ├── qSlicerSceneViewsModuleDialog.h │ │ │ ├── qSlicerSceneViewsModuleWidget.cxx │ │ │ └── qSlicerSceneViewsModuleWidget.h │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerSceneViewsModuleLogic.cxx │ │ │ └── vtkSlicerSceneViewsModuleLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── Camera.png │ │ │ │ ├── Delete.png │ │ │ │ ├── Layout3DView.png │ │ │ │ ├── LayoutFull.png │ │ │ │ ├── LayoutGreenSliceView.png │ │ │ │ ├── LayoutRedSliceView.png │ │ │ │ ├── LayoutYellowSliceView.png │ │ │ │ ├── MoveDown.png │ │ │ │ ├── MoveUp.png │ │ │ │ ├── Restore.png │ │ │ │ └── SelectCameras.png │ │ │ ├── UI │ │ │ │ └── qSlicerSceneViewsModuleWidget.ui │ │ │ └── qSlicerSceneViewsModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ │ ├── CMakeLists.txt │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ └── SceneView.png │ │ │ │ └── qSlicerSceneViewsSubjectHierarchyPlugins.qrc │ │ │ ├── qSlicerSubjectHierarchySceneViewsPlugin.cxx │ │ │ └── qSlicerSubjectHierarchySceneViewsPlugin.h │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ ├── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── vtkSlicerSceneViewsModuleLogicTest1.cxx │ │ │ ├── Data │ │ │ │ └── Input │ │ │ │ │ └── SceneViewWithoutCamera.mrml │ │ │ └── Python │ │ │ │ ├── AddStorableDataAfterSceneViewTest.py │ │ │ │ └── CMakeLists.txt │ │ ├── qSlicerSceneViewsModule.cxx │ │ └── qSlicerSceneViewsModule.h │ ├── Segmentations │ │ ├── CMakeLists.txt │ │ ├── EditorEffects │ │ │ ├── CMakeLists.txt │ │ │ ├── Python │ │ │ │ ├── AbstractScriptedSegmentEditorAutoCompleteEffect.py │ │ │ │ ├── AbstractScriptedSegmentEditorEffect.py │ │ │ │ ├── AbstractScriptedSegmentEditorLabelEffect.py │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Resources │ │ │ │ │ └── Icons │ │ │ │ │ │ ├── Draw.png │ │ │ │ │ │ ├── Erode.png │ │ │ │ │ │ ├── FillBetweenSlices.png │ │ │ │ │ │ ├── GrowFromSeeds.png │ │ │ │ │ │ ├── Hollow.png │ │ │ │ │ │ ├── Islands.png │ │ │ │ │ │ ├── LevelTracing.png │ │ │ │ │ │ ├── Logical.png │ │ │ │ │ │ ├── Margin.png │ │ │ │ │ │ ├── Smoothing.png │ │ │ │ │ │ └── Threshold.png │ │ │ │ ├── SegmentEditorDrawEffect.py │ │ │ │ ├── SegmentEditorEffects.__init__.py.in │ │ │ │ ├── SegmentEditorFillBetweenSlicesEffect.py │ │ │ │ ├── SegmentEditorGrowFromSeedsEffect.py │ │ │ │ ├── SegmentEditorHollowEffect.py │ │ │ │ ├── SegmentEditorIslandsEffect.py │ │ │ │ ├── SegmentEditorLevelTracingEffect.py │ │ │ │ ├── SegmentEditorLogicalEffect.py │ │ │ │ ├── SegmentEditorMarginEffect.py │ │ │ │ ├── SegmentEditorSmoothingEffect.py │ │ │ │ └── SegmentEditorThresholdEffect.py │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ ├── CursorBaseArrow.png │ │ │ │ │ ├── Erase.png │ │ │ │ │ ├── NullEffect.png │ │ │ │ │ ├── Paint.png │ │ │ │ │ └── Rectangle.png │ │ │ │ └── qSlicerSegmentationsEditorEffects.qrc │ │ │ ├── qSlicerSegmentEditorAbstractEffect.cxx │ │ │ ├── qSlicerSegmentEditorAbstractEffect.h │ │ │ ├── qSlicerSegmentEditorAbstractEffect_p.h │ │ │ ├── qSlicerSegmentEditorAbstractLabelEffect.cxx │ │ │ ├── qSlicerSegmentEditorAbstractLabelEffect.h │ │ │ ├── qSlicerSegmentEditorAbstractLabelEffect_p.h │ │ │ ├── qSlicerSegmentEditorEffectFactory.cxx │ │ │ ├── qSlicerSegmentEditorEffectFactory.h │ │ │ ├── qSlicerSegmentEditorEraseEffect.cxx │ │ │ ├── qSlicerSegmentEditorEraseEffect.h │ │ │ ├── qSlicerSegmentEditorPaintEffect.cxx │ │ │ ├── qSlicerSegmentEditorPaintEffect.h │ │ │ ├── qSlicerSegmentEditorPaintEffect_p.h │ │ │ ├── qSlicerSegmentEditorScissorsEffect.cxx │ │ │ ├── qSlicerSegmentEditorScissorsEffect.h │ │ │ ├── qSlicerSegmentEditorScriptedEffect.cxx │ │ │ ├── qSlicerSegmentEditorScriptedEffect.h │ │ │ ├── qSlicerSegmentEditorScriptedLabelEffect.cxx │ │ │ └── qSlicerSegmentEditorScriptedLabelEffect.h │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── FibHeap.cxx │ │ │ ├── FibHeap.h │ │ │ ├── vtkImageGrowCutSegment.cxx │ │ │ ├── vtkImageGrowCutSegment.h │ │ │ ├── vtkSlicerSegmentationGeometryLogic.cxx │ │ │ ├── vtkSlicerSegmentationGeometryLogic.h │ │ │ ├── vtkSlicerSegmentationsModuleLogic.cxx │ │ │ └── vtkSlicerSegmentationsModuleLogic.h │ │ ├── MRML │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkMRMLSegmentEditorNode.cxx │ │ │ └── vtkMRMLSegmentEditorNode.h │ │ ├── MRMLDM │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkMRMLSegmentationsDisplayableManager2D.cxx │ │ │ ├── vtkMRMLSegmentationsDisplayableManager2D.h │ │ │ ├── vtkMRMLSegmentationsDisplayableManager3D.cxx │ │ │ └── vtkMRMLSegmentationsDisplayableManager3D.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── AddLabelmap.png │ │ │ │ └── Segmentations.png │ │ │ ├── UI │ │ │ │ ├── qSlicerSegmentationsIOOptionsWidget.ui │ │ │ │ ├── qSlicerSegmentationsModule.ui │ │ │ │ └── qSlicerSegmentationsSettingsPanel.ui │ │ │ └── qSlicerSegmentationsModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ │ ├── CMakeLists.txt │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ ├── Segment.png │ │ │ │ │ └── Segmentation.png │ │ │ │ └── qSlicerSegmentationsSubjectHierarchyPlugins.qrc │ │ │ ├── qSlicerSubjectHierarchySegmentationsPlugin.cxx │ │ │ ├── qSlicerSubjectHierarchySegmentationsPlugin.h │ │ │ ├── qSlicerSubjectHierarchySegmentsPlugin.cxx │ │ │ └── qSlicerSubjectHierarchySegmentsPlugin.h │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Python │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── SegmentationWidgetsTest1.py │ │ │ │ ├── SegmentationsModuleTest1.py │ │ │ │ └── SegmentationsModuleTest2.py │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLSegmentEditorWidgetPlugin.cxx │ │ │ │ ├── qMRMLSegmentEditorWidgetPlugin.h │ │ │ │ ├── qMRMLSegmentSelectorWidgetPlugin.cxx │ │ │ │ ├── qMRMLSegmentSelectorWidgetPlugin.h │ │ │ │ ├── qMRMLSegmentationConversionParametersWidgetPlugin.cxx │ │ │ │ ├── qMRMLSegmentationConversionParametersWidgetPlugin.h │ │ │ │ ├── qMRMLSegmentationDisplayNodeWidgetPlugin.cxx │ │ │ │ ├── qMRMLSegmentationDisplayNodeWidgetPlugin.h │ │ │ │ ├── qMRMLSegmentationFileExportWidgetPlugin.cxx │ │ │ │ ├── qMRMLSegmentationFileExportWidgetPlugin.h │ │ │ │ ├── qMRMLSegmentationRepresentationsListViewPlugin.cxx │ │ │ │ ├── qMRMLSegmentationRepresentationsListViewPlugin.h │ │ │ │ ├── qMRMLSegmentsTableViewPlugin.cxx │ │ │ │ ├── qMRMLSegmentsTableViewPlugin.h │ │ │ │ ├── qSlicerSegmentationsModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerSegmentationsModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerSegmentationsModuleWidgetsPlugin.cxx │ │ │ │ └── qSlicerSegmentationsModuleWidgetsPlugin.h │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ ├── Add.png │ │ │ │ │ ├── ClearSelection.png │ │ │ │ │ ├── Completed.png │ │ │ │ │ ├── Edit.png │ │ │ │ │ ├── Flagged.png │ │ │ │ │ ├── Help.png │ │ │ │ │ ├── InProgress.png │ │ │ │ │ ├── MakeModel.png │ │ │ │ │ ├── Master.png │ │ │ │ │ ├── NotStarted.png │ │ │ │ │ ├── Present.png │ │ │ │ │ ├── Remove.png │ │ │ │ │ └── SlicerRotateWarning.png │ │ │ │ ├── UI │ │ │ │ │ ├── qMRMLSegmentEditorWidget.ui │ │ │ │ │ ├── qMRMLSegmentationConversionParametersWidget.ui │ │ │ │ │ ├── qMRMLSegmentationDisplayNodeWidget.ui │ │ │ │ │ ├── qMRMLSegmentationFileExportWidget.ui │ │ │ │ │ ├── qMRMLSegmentationGeometryWidget.ui │ │ │ │ │ ├── qMRMLSegmentationRepresentationsListView.ui │ │ │ │ │ └── qMRMLSegmentsTableView.ui │ │ │ │ └── qSlicerSegmentationsModuleWidgets.qrc │ │ │ ├── qMRMLDoubleSpinBoxDelegate.cxx │ │ │ ├── qMRMLDoubleSpinBoxDelegate.h │ │ │ ├── qMRMLSegmentEditorWidget.cxx │ │ │ ├── qMRMLSegmentEditorWidget.h │ │ │ ├── qMRMLSegmentationConversionParametersWidget.cxx │ │ │ ├── qMRMLSegmentationConversionParametersWidget.h │ │ │ ├── qMRMLSegmentationDisplayNodeWidget.cxx │ │ │ ├── qMRMLSegmentationDisplayNodeWidget.h │ │ │ ├── qMRMLSegmentationFileExportWidget.cxx │ │ │ ├── qMRMLSegmentationFileExportWidget.h │ │ │ ├── qMRMLSegmentationGeometryDialog.cxx │ │ │ ├── qMRMLSegmentationGeometryDialog.h │ │ │ ├── qMRMLSegmentationGeometryWidget.cxx │ │ │ ├── qMRMLSegmentationGeometryWidget.h │ │ │ ├── qMRMLSegmentationRepresentationsListView.cxx │ │ │ ├── qMRMLSegmentationRepresentationsListView.h │ │ │ ├── qMRMLSegmentsModel.cxx │ │ │ ├── qMRMLSegmentsModel.h │ │ │ ├── qMRMLSegmentsModel_p.h │ │ │ ├── qMRMLSegmentsTableView.cxx │ │ │ ├── qMRMLSegmentsTableView.h │ │ │ ├── qMRMLSortFilterSegmentsProxyModel.cxx │ │ │ └── qMRMLSortFilterSegmentsProxyModel.h │ │ ├── qSlicerSegmentationsIOOptionsWidget.cxx │ │ ├── qSlicerSegmentationsIOOptionsWidget.h │ │ ├── qSlicerSegmentationsModule.cxx │ │ ├── qSlicerSegmentationsModule.h │ │ ├── qSlicerSegmentationsModuleWidget.cxx │ │ ├── qSlicerSegmentationsModuleWidget.h │ │ ├── qSlicerSegmentationsNodeWriter.cxx │ │ ├── qSlicerSegmentationsNodeWriter.h │ │ ├── qSlicerSegmentationsNodeWriterOptionsWidget.cxx │ │ ├── qSlicerSegmentationsNodeWriterOptionsWidget.h │ │ ├── qSlicerSegmentationsReader.cxx │ │ ├── qSlicerSegmentationsReader.h │ │ ├── qSlicerSegmentationsSettingsPanel.cxx │ │ └── qSlicerSegmentationsSettingsPanel.h │ ├── SlicerWelcome │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ └── SlicerWelcome.dox │ │ ├── Resources │ │ │ ├── HTML │ │ │ │ ├── About.html │ │ │ │ ├── Acknowledgment.html │ │ │ │ ├── Feedback.html │ │ │ │ ├── OtherUsefulHints.html │ │ │ │ └── stylesheet.css │ │ │ ├── Icons │ │ │ │ ├── Chat.png │ │ │ │ └── SlicerWelcome.png │ │ │ ├── Images │ │ │ │ ├── SlicerAdvancedGear-Original.png │ │ │ │ ├── SlicerLoadData-Original.png │ │ │ │ ├── SlicerLoadDicom-Original.png │ │ │ │ ├── SlicerWWW-Original.png │ │ │ │ ├── WelcomeLogo.png │ │ │ │ └── WelcomeSubjectHierarchy.png │ │ │ ├── UI │ │ │ │ └── qSlicerWelcomeModuleWidget.ui │ │ │ └── qSlicerWelcomeModule.qrc │ │ ├── qSlicerWelcomeModule.cxx │ │ ├── qSlicerWelcomeModule.h │ │ ├── qSlicerWelcomeModuleWidget.cxx │ │ └── qSlicerWelcomeModuleWidget.h │ ├── SubjectHierarchy │ │ ├── CMakeLists.txt │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerSubjectHierarchyModuleLogic.cxx │ │ │ └── vtkSlicerSubjectHierarchyModuleLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── Help.png │ │ │ │ └── SubjectHierarchy.png │ │ │ ├── UI │ │ │ │ ├── qSlicerSubjectHierarchyModule.ui │ │ │ │ └── qSlicerSubjectHierarchySettingsPanel.ui │ │ │ └── qSlicerSubjectHierarchyModule.qrc │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ ├── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── vtkSlicerSubjectHierarchyModuleLogicTest.cxx │ │ │ └── Python │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── SubjectHierarchyCorePluginsSelfTest.py │ │ │ │ ├── SubjectHierarchyFoldersTest1.py │ │ │ │ └── SubjectHierarchyGenericSelfTest.py │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLSubjectHierarchyComboBoxPlugin.cxx │ │ │ │ ├── qMRMLSubjectHierarchyComboBoxPlugin.h │ │ │ │ ├── qMRMLSubjectHierarchyTreeViewPlugin.cxx │ │ │ │ ├── qMRMLSubjectHierarchyTreeViewPlugin.h │ │ │ │ ├── qSlicerSubjectHierarchyModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerSubjectHierarchyModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerSubjectHierarchyModuleWidgetsPlugin.cxx │ │ │ │ └── qSlicerSubjectHierarchyModuleWidgetsPlugin.h │ │ │ ├── Python │ │ │ │ ├── AbstractScriptedSubjectHierarchyPlugin.py │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── __init__.py │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ ├── Chart.png │ │ │ │ │ ├── Colors.png │ │ │ │ │ ├── DeformableTransform.png │ │ │ │ │ ├── Folder.png │ │ │ │ │ ├── LinearTransform.png │ │ │ │ │ ├── Patient.png │ │ │ │ │ ├── Study.png │ │ │ │ │ ├── Transform.png │ │ │ │ │ ├── Unknown.png │ │ │ │ │ └── Warning.png │ │ │ │ └── qSlicerSubjectHierarchyModuleWidgets.qrc │ │ │ ├── qMRMLSortFilterSubjectHierarchyProxyModel.cxx │ │ │ ├── qMRMLSortFilterSubjectHierarchyProxyModel.h │ │ │ ├── qMRMLSubjectHierarchyComboBox.cxx │ │ │ ├── qMRMLSubjectHierarchyComboBox.h │ │ │ ├── qMRMLSubjectHierarchyModel.cxx │ │ │ ├── qMRMLSubjectHierarchyModel.h │ │ │ ├── qMRMLSubjectHierarchyModel_p.h │ │ │ ├── qMRMLSubjectHierarchyTreeView.cxx │ │ │ ├── qMRMLSubjectHierarchyTreeView.h │ │ │ ├── qMRMLTransformItemDelegate.cxx │ │ │ ├── qMRMLTransformItemDelegate.h │ │ │ ├── qSlicerSubjectHierarchyAbstractPlugin.cxx │ │ │ ├── qSlicerSubjectHierarchyAbstractPlugin.h │ │ │ ├── qSlicerSubjectHierarchyChartsPlugin.cxx │ │ │ ├── qSlicerSubjectHierarchyChartsPlugin.h │ │ │ ├── qSlicerSubjectHierarchyCloneNodePlugin.cxx │ │ │ ├── qSlicerSubjectHierarchyCloneNodePlugin.h │ │ │ ├── qSlicerSubjectHierarchyDefaultPlugin.cxx │ │ │ ├── qSlicerSubjectHierarchyDefaultPlugin.h │ │ │ ├── qSlicerSubjectHierarchyFolderPlugin.cxx │ │ │ ├── qSlicerSubjectHierarchyFolderPlugin.h │ │ │ ├── qSlicerSubjectHierarchyModuleWidgetsPythonQtDecorators.h │ │ │ ├── qSlicerSubjectHierarchyOpacityPlugin.cxx │ │ │ ├── qSlicerSubjectHierarchyOpacityPlugin.h │ │ │ ├── qSlicerSubjectHierarchyParseLocalDataPlugin.cxx │ │ │ ├── qSlicerSubjectHierarchyParseLocalDataPlugin.h │ │ │ ├── qSlicerSubjectHierarchyPluginHandler.cxx │ │ │ ├── qSlicerSubjectHierarchyPluginHandler.h │ │ │ ├── qSlicerSubjectHierarchyPluginLogic.cxx │ │ │ ├── qSlicerSubjectHierarchyPluginLogic.h │ │ │ ├── qSlicerSubjectHierarchyRegisterPlugin.cxx │ │ │ ├── qSlicerSubjectHierarchyRegisterPlugin.h │ │ │ ├── qSlicerSubjectHierarchyScriptedPlugin.cxx │ │ │ ├── qSlicerSubjectHierarchyScriptedPlugin.h │ │ │ ├── qSlicerSubjectHierarchyVisibilityPlugin.cxx │ │ │ └── qSlicerSubjectHierarchyVisibilityPlugin.h │ │ ├── qSlicerSubjectHierarchyModule.cxx │ │ ├── qSlicerSubjectHierarchyModule.h │ │ ├── qSlicerSubjectHierarchyModuleWidget.cxx │ │ ├── qSlicerSubjectHierarchyModuleWidget.h │ │ ├── qSlicerSubjectHierarchySettingsPanel.cxx │ │ └── qSlicerSubjectHierarchySettingsPanel.h │ ├── Tables │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ ├── Tables.dox │ │ │ └── Tables.xml │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerTablesLogic.cxx │ │ │ └── vtkSlicerTablesLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ └── Tables.png │ │ │ ├── UI │ │ │ │ └── qSlicerTablesModuleWidget.ui │ │ │ └── qSlicerTablesModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ │ ├── CMakeLists.txt │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ └── Table.png │ │ │ │ └── qSlicerTablesSubjectHierarchyPlugins.qrc │ │ │ ├── qSlicerSubjectHierarchyTablesPlugin.cxx │ │ │ └── qSlicerSubjectHierarchyTablesPlugin.h │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ ├── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── vtkSlicerTablesLogicAddFileTest.cxx │ │ │ └── Python │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── TablesSelfTest.py │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qSlicerTableColumnPropertiesWidgetPlugin.cxx │ │ │ │ ├── qSlicerTableColumnPropertiesWidgetPlugin.h │ │ │ │ ├── qSlicerTablesModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerTablesModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerTablesModuleWidgetsPlugin.cxx │ │ │ │ └── qSlicerTablesModuleWidgetsPlugin.h │ │ │ ├── Resources │ │ │ │ └── UI │ │ │ │ │ └── qSlicerTableColumnPropertiesWidget.ui │ │ │ ├── Testing │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Cxx │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── qSlicerTableColumnPropertiesWidgetTest1.cxx │ │ │ │ │ └── qSlicerTablesModuleWidgetsCxxTests.h │ │ │ ├── qSlicerTableColumnPropertiesWidget.cxx │ │ │ └── qSlicerTableColumnPropertiesWidget.h │ │ ├── qSlicerTablesModule.cxx │ │ ├── qSlicerTablesModule.h │ │ ├── qSlicerTablesModuleWidget.cxx │ │ ├── qSlicerTablesModuleWidget.h │ │ ├── qSlicerTablesReader.cxx │ │ └── qSlicerTablesReader.h │ ├── Terminologies │ │ ├── CMakeLists.txt │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerTerminologiesModuleLogic.cxx │ │ │ ├── vtkSlicerTerminologiesModuleLogic.h │ │ │ ├── vtkSlicerTerminologyCategory.cxx │ │ │ ├── vtkSlicerTerminologyCategory.h │ │ │ ├── vtkSlicerTerminologyEntry.cxx │ │ │ ├── vtkSlicerTerminologyEntry.h │ │ │ ├── vtkSlicerTerminologyType.cxx │ │ │ └── vtkSlicerTerminologyType.h │ │ ├── Resources │ │ │ ├── AnatomicRegionAndModifier-DICOM-Master.json │ │ │ ├── SegmentationCategoryTypeModifier-DICOM-Master.json │ │ │ ├── SegmentationCategoryTypeModifier-SlicerGeneralAnatomy.json │ │ │ └── UI │ │ │ │ └── qSlicerTerminologiesModule.ui │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qSlicerTerminologiesModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerTerminologiesModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerTerminologiesModuleWidgetsPlugin.cxx │ │ │ │ ├── qSlicerTerminologiesModuleWidgetsPlugin.h │ │ │ │ ├── qSlicerTerminologyNavigatorWidgetPlugin.cxx │ │ │ │ └── qSlicerTerminologyNavigatorWidgetPlugin.h │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ └── ResetProperty.png │ │ │ │ ├── UI │ │ │ │ │ └── qSlicerTerminologyNavigatorWidget.ui │ │ │ │ └── qSlicerTerminologiesModuleWidgets.qrc │ │ │ ├── qSlicerTerminologyItemDelegate.cxx │ │ │ ├── qSlicerTerminologyItemDelegate.h │ │ │ ├── qSlicerTerminologyNavigatorWidget.cxx │ │ │ ├── qSlicerTerminologyNavigatorWidget.h │ │ │ ├── qSlicerTerminologySelectorButton.cxx │ │ │ ├── qSlicerTerminologySelectorButton.h │ │ │ ├── qSlicerTerminologySelectorDialog.cxx │ │ │ └── qSlicerTerminologySelectorDialog.h │ │ ├── qSlicerTerminologiesModule.cxx │ │ ├── qSlicerTerminologiesModule.h │ │ ├── qSlicerTerminologiesModuleWidget.cxx │ │ ├── qSlicerTerminologiesModuleWidget.h │ │ ├── qSlicerTerminologiesReader.cxx │ │ └── qSlicerTerminologiesReader.h │ ├── Texts │ │ ├── CMakeLists.txt │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerTextsLogic.cxx │ │ │ └── vtkSlicerTextsLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ └── SlicerTexts.png │ │ │ ├── UI │ │ │ │ └── qSlicerTextsModuleWidget.ui │ │ │ └── qSlicerTextsModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ │ ├── CMakeLists.txt │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ └── Text.png │ │ │ │ └── qSlicerTextsSubjectHierarchyPlugins.qrc │ │ │ ├── qSlicerSubjectHierarchyTextsPlugin.cxx │ │ │ └── qSlicerSubjectHierarchyTextsPlugin.h │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLTextWidgetPlugin.cxx │ │ │ │ ├── qMRMLTextWidgetPlugin.h │ │ │ │ ├── qSlicerTextsModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerTextsModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerTextsModuleWidgetsPlugin.cxx │ │ │ │ └── qSlicerTextsModuleWidgetsPlugin.h │ │ │ ├── Resources │ │ │ │ └── UI │ │ │ │ │ └── qMRMLTextWidget.ui │ │ │ ├── qMRMLTextWidget.cxx │ │ │ └── qMRMLTextWidget.h │ │ ├── qSlicerTextsModule.cxx │ │ ├── qSlicerTextsModule.h │ │ ├── qSlicerTextsModuleWidget.cxx │ │ ├── qSlicerTextsModuleWidget.h │ │ ├── qSlicerTextsReader.cxx │ │ └── qSlicerTextsReader.h │ ├── Transforms │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ ├── Transforms.dox │ │ │ └── Transforms.xml │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── Testing │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Cxx │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── Data │ │ │ │ │ ├── affineTransform.txt │ │ │ │ │ ├── cube.vtk │ │ │ │ │ └── transformedCube.vtk │ │ │ │ │ ├── vtkSlicerTransformLogicTest1.cxx │ │ │ │ │ ├── vtkSlicerTransformLogicTest2.cxx │ │ │ │ │ └── vtkSlicerTransformLogicTest3.cxx │ │ │ ├── vtkSlicerTransformLogic.cxx │ │ │ └── vtkSlicerTransformLogic.h │ │ ├── MRMLDM │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkMRMLLinearTransformsDisplayableManager3D.cxx │ │ │ ├── vtkMRMLLinearTransformsDisplayableManager3D.h │ │ │ ├── vtkMRMLTransformsDisplayableManager2D.cxx │ │ │ ├── vtkMRMLTransformsDisplayableManager2D.h │ │ │ ├── vtkMRMLTransformsDisplayableManager3D.cxx │ │ │ └── vtkMRMLTransformsDisplayableManager3D.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── LoadTransform.png │ │ │ │ ├── RotateFirst.png │ │ │ │ ├── Transforms.png │ │ │ │ └── TranslateFirst.png │ │ │ ├── UI │ │ │ │ └── qSlicerTransformsModuleWidget.ui │ │ │ └── qSlicerTransformsModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ │ ├── CMakeLists.txt │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ └── Transform.png │ │ │ │ └── qSlicerTransformsSubjectHierarchyPlugins.qrc │ │ │ ├── qSlicerSubjectHierarchyTransformsPlugin.cxx │ │ │ └── qSlicerSubjectHierarchyTransformsPlugin.h │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── affineTransform.txt │ │ │ │ └── qSlicerTransformsModuleWidgetTest.cxx │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLTransformDisplayNodeWidgetPlugin.cxx │ │ │ │ ├── qMRMLTransformDisplayNodeWidgetPlugin.h │ │ │ │ ├── qMRMLTransformInfoWidgetPlugin.cxx │ │ │ │ ├── qMRMLTransformInfoWidgetPlugin.h │ │ │ │ ├── qSlicerTransformsModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerTransformsModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerTransformsModuleWidgetsPlugin.cxx │ │ │ │ └── qSlicerTransformsModuleWidgetsPlugin.h │ │ │ ├── Resources │ │ │ │ ├── Icons │ │ │ │ │ ├── ContourIcon.png │ │ │ │ │ ├── GlyphIcon.png │ │ │ │ │ └── GridIcon.png │ │ │ │ ├── UI │ │ │ │ │ ├── qMRMLTransformDisplayNodeWidget.ui │ │ │ │ │ └── qMRMLTransformInfoWidget.ui │ │ │ │ └── qSlicerTransformsModuleWidgets.qrc │ │ │ ├── Testing │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLTransformDisplayNodeWidgetTest1.cxx │ │ │ │ └── qMRMLTransformInfoWidgetTest1.cxx │ │ │ ├── qMRMLTransformDisplayNodeWidget.cxx │ │ │ ├── qMRMLTransformDisplayNodeWidget.h │ │ │ ├── qMRMLTransformInfoWidget.cxx │ │ │ └── qMRMLTransformInfoWidget.h │ │ ├── qSlicerTransformsModule.cxx │ │ ├── qSlicerTransformsModule.h │ │ ├── qSlicerTransformsModuleWidget.cxx │ │ ├── qSlicerTransformsModuleWidget.h │ │ ├── qSlicerTransformsReader.cxx │ │ └── qSlicerTransformsReader.h │ ├── Units │ │ ├── CMakeLists.txt │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerUnitsLogic.cxx │ │ │ └── vtkSlicerUnitsLogic.h │ │ ├── Resources │ │ │ └── UI │ │ │ │ └── qSlicerUnitsSettingsPanel.ui │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── vtkSlicerUnitsLogicTest1.cxx │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLUnitWidgetPlugin.cxx │ │ │ │ ├── qMRMLUnitWidgetPlugin.h │ │ │ │ ├── qSlicerUnitsModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerUnitsModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerUnitsModuleWidgetsPlugin.cxx │ │ │ │ └── qSlicerUnitsModuleWidgetsPlugin.h │ │ │ ├── Resources │ │ │ │ └── UI │ │ │ │ │ ├── qMRMLSettingsUnitWidget.ui │ │ │ │ │ └── qMRMLUnitWidget.ui │ │ │ ├── qMRMLSettingsUnitWidget.cxx │ │ │ ├── qMRMLSettingsUnitWidget.h │ │ │ ├── qMRMLUnitWidget.cxx │ │ │ └── qMRMLUnitWidget.h │ │ ├── qSlicerUnitsModule.cxx │ │ ├── qSlicerUnitsModule.h │ │ ├── qSlicerUnitsSettingsPanel.cxx │ │ └── qSlicerUnitsSettingsPanel.h │ ├── ViewControllers │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ └── ViewControllers.xml │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkSlicerViewControllersLogic.cxx │ │ │ └── vtkSlicerViewControllersLogic.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ └── ViewControllers.png │ │ │ ├── UI │ │ │ │ └── qSlicerViewControllersModuleWidget.ui │ │ │ └── qSlicerViewControllersModule.qrc │ │ ├── qSlicerViewControllersModule.cxx │ │ ├── qSlicerViewControllersModule.h │ │ ├── qSlicerViewControllersModuleWidget.cxx │ │ └── qSlicerViewControllersModuleWidget.h │ ├── VolumeRendering │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ │ ├── VolumeRendering.dox │ │ │ └── VolumeRendering.xml │ │ ├── Logic │ │ │ ├── CMakeLists.txt │ │ │ ├── Testing │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Cxx │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── vtkSlicerVolumeRenderingLogicAddFromFileTest.cxx │ │ │ │ │ └── vtkSlicerVolumeRenderingLogicTest.cxx │ │ │ ├── vtkSlicerVolumeRenderingLogic.cxx │ │ │ └── vtkSlicerVolumeRenderingLogic.h │ │ ├── MRML │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkMRMLCPURayCastVolumeRenderingDisplayNode.cxx │ │ │ ├── vtkMRMLCPURayCastVolumeRenderingDisplayNode.h │ │ │ ├── vtkMRMLGPURayCastVolumeRenderingDisplayNode.cxx │ │ │ ├── vtkMRMLGPURayCastVolumeRenderingDisplayNode.h │ │ │ ├── vtkMRMLMultiVolumeRenderingDisplayNode.cxx │ │ │ ├── vtkMRMLMultiVolumeRenderingDisplayNode.h │ │ │ ├── vtkMRMLShaderPropertyNode.cxx │ │ │ ├── vtkMRMLShaderPropertyNode.h │ │ │ ├── vtkMRMLShaderPropertyStorageNode.cxx │ │ │ ├── vtkMRMLShaderPropertyStorageNode.h │ │ │ ├── vtkMRMLVolumePropertyNode.cxx │ │ │ ├── vtkMRMLVolumePropertyNode.h │ │ │ ├── vtkMRMLVolumePropertyStorageNode.cxx │ │ │ ├── vtkMRMLVolumePropertyStorageNode.h │ │ │ ├── vtkMRMLVolumeRenderingDisplayNode.cxx │ │ │ └── vtkMRMLVolumeRenderingDisplayNode.h │ │ ├── MRMLDM │ │ │ ├── CMakeLists.txt │ │ │ ├── vtkMRMLVolumeRenderingDisplayableManager.cxx │ │ │ └── vtkMRMLVolumeRenderingDisplayableManager.h │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── CT-AAA.png │ │ │ │ ├── CT-AAA2.png │ │ │ │ ├── CT-Air.png │ │ │ │ ├── CT-Bone.png │ │ │ │ ├── CT-Bones.png │ │ │ │ ├── CT-Cardiac.png │ │ │ │ ├── CT-Cardiac2.png │ │ │ │ ├── CT-Cardiac3.png │ │ │ │ ├── CT-Chest-Contrast-Enhanced.png │ │ │ │ ├── CT-Chest-Vessels.png │ │ │ │ ├── CT-Coronary-Arteries-2.png │ │ │ │ ├── CT-Coronary-Arteries-3.png │ │ │ │ ├── CT-Coronary-Arteries.png │ │ │ │ ├── CT-Cropped-Volume-Bone.png │ │ │ │ ├── CT-Fat.png │ │ │ │ ├── CT-Liver-Vasculature.png │ │ │ │ ├── CT-Lung.png │ │ │ │ ├── CT-MIP.png │ │ │ │ ├── CT-Muscle.png │ │ │ │ ├── CT-Pulmonary-Arteries.png │ │ │ │ ├── CT-Soft-Tissue.png │ │ │ │ ├── CT-X-ray.png │ │ │ │ ├── DTI-FA-Brain.png │ │ │ │ ├── MR-Angio.png │ │ │ │ ├── MR-Default.png │ │ │ │ ├── MR-MIP.png │ │ │ │ ├── MR-T2-Brain.png │ │ │ │ └── VolumeRendering.png │ │ │ ├── UI │ │ │ │ ├── qMRMLVolumePropertyNodeWidget.ui │ │ │ │ ├── qSlicerCPURayCastVolumeRenderingPropertiesWidget.ui │ │ │ │ ├── qSlicerGPURayCastVolumeRenderingPropertiesWidget.ui │ │ │ │ ├── qSlicerMultiVolumeRenderingPropertiesWidget.ui │ │ │ │ ├── qSlicerVolumeRenderingModuleWidget.ui │ │ │ │ ├── qSlicerVolumeRenderingPresetComboBox.ui │ │ │ │ └── qSlicerVolumeRenderingSettingsPanel.ui │ │ │ ├── presets.xml │ │ │ └── qSlicerVolumeRenderingModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ │ ├── CMakeLists.txt │ │ │ ├── qSlicerSubjectHierarchyVolumeRenderingPlugin.cxx │ │ │ └── qSlicerSubjectHierarchyVolumeRenderingPlugin.h │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ ├── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLVolumePropertyNodeWidgetTest1.cxx │ │ │ │ ├── qSlicerPresetComboBoxTest.cxx │ │ │ │ ├── qSlicerVolumeRenderingModuleWidgetTest1.cxx │ │ │ │ ├── qSlicerVolumeRenderingModuleWidgetTest2.cxx │ │ │ │ ├── vtkMRMLShaderPropertyStorageNodeTest1.cxx │ │ │ │ ├── vtkMRMLVolumePropertyNodeTest1.cxx │ │ │ │ ├── vtkMRMLVolumePropertyStorageNodeTest1.cxx │ │ │ │ ├── vtkMRMLVolumeRenderingDisplayableManagerTest1.cxx │ │ │ │ └── vtkMRMLVolumeRenderingMultiVolumeTest.cxx │ │ │ ├── Data │ │ │ │ └── Input │ │ │ │ │ ├── AnnotationROI.acsv │ │ │ │ │ ├── VolumeProperty.vp │ │ │ │ │ ├── VolumeRendering_CTAbdomenTutorial.xml │ │ │ │ │ ├── VolumeRendering_CTAbdomen_AppleTutorial.xml │ │ │ │ │ └── volRender.mrml │ │ │ └── Python │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── VolumeRenderingSceneClose.py │ │ │ │ ├── VolumeRenderingThreeDOnlyLayout.py │ │ │ │ ├── VolumeRendering_CTAbdomenTutorial.py │ │ │ │ ├── VolumeRendering_CTAbdomen_AppleTutorial.py │ │ │ │ └── slicervolumerenderingtestdatapaths.py.in │ │ ├── Widgets │ │ │ ├── CMakeLists.txt │ │ │ ├── DesignerPlugins │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qMRMLVolumePropertyNodeWidgetPlugin.cxx │ │ │ │ ├── qMRMLVolumePropertyNodeWidgetPlugin.h │ │ │ │ ├── qSlicerGPUMemoryComboBoxPlugin.cxx │ │ │ │ ├── qSlicerGPUMemoryComboBoxPlugin.h │ │ │ │ ├── qSlicerPresetComboBoxPlugin.cxx │ │ │ │ ├── qSlicerPresetComboBoxPlugin.h │ │ │ │ ├── qSlicerVolumeRenderingModuleWidgetsAbstractPlugin.cxx │ │ │ │ ├── qSlicerVolumeRenderingModuleWidgetsAbstractPlugin.h │ │ │ │ ├── qSlicerVolumeRenderingModuleWidgetsPlugin.cxx │ │ │ │ ├── qSlicerVolumeRenderingModuleWidgetsPlugin.h │ │ │ │ ├── qSlicerVolumeRenderingPresetComboBoxPlugin.cxx │ │ │ │ └── qSlicerVolumeRenderingPresetComboBoxPlugin.h │ │ │ ├── qMRMLVolumePropertyNodeWidget.cxx │ │ │ ├── qMRMLVolumePropertyNodeWidget.h │ │ │ ├── qSlicerCPURayCastVolumeRenderingPropertiesWidget.cxx │ │ │ ├── qSlicerCPURayCastVolumeRenderingPropertiesWidget.h │ │ │ ├── qSlicerGPUMemoryComboBox.cxx │ │ │ ├── qSlicerGPUMemoryComboBox.h │ │ │ ├── qSlicerGPURayCastVolumeRenderingPropertiesWidget.cxx │ │ │ ├── qSlicerGPURayCastVolumeRenderingPropertiesWidget.h │ │ │ ├── qSlicerMultiVolumeRenderingPropertiesWidget.cxx │ │ │ ├── qSlicerMultiVolumeRenderingPropertiesWidget.h │ │ │ ├── qSlicerPresetComboBox.cxx │ │ │ ├── qSlicerPresetComboBox.h │ │ │ ├── qSlicerPresetComboBox_p.h │ │ │ ├── qSlicerVolumeRenderingModuleWidget.cxx │ │ │ ├── qSlicerVolumeRenderingModuleWidget.h │ │ │ ├── qSlicerVolumeRenderingPresetComboBox.cxx │ │ │ ├── qSlicerVolumeRenderingPresetComboBox.h │ │ │ ├── qSlicerVolumeRenderingPropertiesWidget.cxx │ │ │ └── qSlicerVolumeRenderingPropertiesWidget.h │ │ ├── qSlicerShaderPropertyReader.cxx │ │ ├── qSlicerShaderPropertyReader.h │ │ ├── qSlicerVolumeRenderingModule.cxx │ │ ├── qSlicerVolumeRenderingModule.h │ │ ├── qSlicerVolumeRenderingReader.cxx │ │ ├── qSlicerVolumeRenderingReader.h │ │ ├── qSlicerVolumeRenderingSettingsPanel.cxx │ │ └── qSlicerVolumeRenderingSettingsPanel.h │ └── Volumes │ │ ├── CMakeLists.txt │ │ ├── Documentation │ │ ├── Volumes.dox │ │ └── Volumes.xml │ │ ├── Logic │ │ ├── CMakeLists.txt │ │ ├── vtkSlicerVolumesLogic.cxx │ │ └── vtkSlicerVolumesLogic.h │ │ ├── Resources │ │ ├── Icons │ │ │ ├── Large │ │ │ │ ├── SlicerAddVolume.png │ │ │ │ └── SlicerVolumes.png │ │ │ ├── LoadVolume.png │ │ │ ├── Medium │ │ │ │ ├── SlicerAddVolume.png │ │ │ │ └── SlicerVolumes.png │ │ │ ├── Small │ │ │ │ ├── SlicerAddVolume.png │ │ │ │ └── SlicerVolumes.png │ │ │ ├── Volumes.png │ │ │ └── XLarge │ │ │ │ ├── SlicerAddVolume.png │ │ │ │ └── SlicerVolumes.png │ │ ├── UI │ │ │ ├── qSlicerVolumesIOOptionsWidget.ui │ │ │ └── qSlicerVolumesModuleWidget.ui │ │ └── qSlicerVolumesModule.qrc │ │ ├── SubjectHierarchyPlugins │ │ ├── CMakeLists.txt │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── DiffusionTensorVolume.png │ │ │ │ ├── Labelmap.png │ │ │ │ ├── Volume.png │ │ │ │ ├── VolumeVisibilityOff.png │ │ │ │ └── VolumeVisibilityOn.png │ │ │ └── qSlicerVolumesSubjectHierarchyPlugins.qrc │ │ ├── qSlicerSubjectHierarchyDiffusionTensorVolumesPlugin.cxx │ │ ├── qSlicerSubjectHierarchyDiffusionTensorVolumesPlugin.h │ │ ├── qSlicerSubjectHierarchyLabelMapsPlugin.cxx │ │ ├── qSlicerSubjectHierarchyLabelMapsPlugin.h │ │ ├── qSlicerSubjectHierarchyVolumesPlugin.cxx │ │ └── qSlicerSubjectHierarchyVolumesPlugin.h │ │ ├── Testing │ │ ├── CMakeLists.txt │ │ ├── Cxx │ │ │ ├── CMakeLists.txt │ │ │ ├── qSlicerVolumesIOOptionsWidgetTest1.cxx │ │ │ ├── qSlicerVolumesModuleWidgetTest1.cxx │ │ │ ├── vtkSlicerVolumesLogicTest1.cxx │ │ │ └── vtkSlicerVolumesLogicTest2.cxx │ │ └── Python │ │ │ ├── CMakeLists.txt │ │ │ ├── LoadVolumeDisplaybleSceneModelClose.py │ │ │ └── VolumesLogicCompareVolumeGeometry.py │ │ ├── Widgets │ │ ├── CMakeLists.txt │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── WindowLevelPreset-Abdomen.png │ │ │ │ ├── WindowLevelPreset-Brain.png │ │ │ │ ├── WindowLevelPreset-CT-air.png │ │ │ │ ├── WindowLevelPreset-CT-bone.png │ │ │ │ ├── WindowLevelPreset-DTI.png │ │ │ │ ├── WindowLevelPreset-Lung.png │ │ │ │ └── WindowLevelPreset-PET.png │ │ │ ├── UI │ │ │ │ ├── qSlicerDTISliceDisplayWidget.ui │ │ │ │ ├── qSlicerDiffusionTensorVolumeDisplayWidget.ui │ │ │ │ ├── qSlicerDiffusionWeightedVolumeDisplayWidget.ui │ │ │ │ ├── qSlicerLabelMapVolumeDisplayWidget.ui │ │ │ │ └── qSlicerScalarVolumeDisplayWidget.ui │ │ │ └── qSlicerVolumesWidgetsModule.qrc │ │ ├── Testing │ │ │ ├── CMakeLists.txt │ │ │ └── Cxx │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── qSlicerDTISliceDisplayWidgetTest1.cxx │ │ │ │ ├── qSlicerDTISliceDisplayWidgetTest2.cxx │ │ │ │ └── qSlicerDiffusionTensorVolumeDisplayWidgetTest1.cxx │ │ ├── qSlicerDTISliceDisplayWidget.cxx │ │ ├── qSlicerDTISliceDisplayWidget.h │ │ ├── qSlicerDiffusionTensorVolumeDisplayWidget.cxx │ │ ├── qSlicerDiffusionTensorVolumeDisplayWidget.h │ │ ├── qSlicerDiffusionWeightedVolumeDisplayWidget.cxx │ │ ├── qSlicerDiffusionWeightedVolumeDisplayWidget.h │ │ ├── qSlicerLabelMapVolumeDisplayWidget.cxx │ │ ├── qSlicerLabelMapVolumeDisplayWidget.h │ │ ├── qSlicerScalarVolumeDisplayWidget.cxx │ │ ├── qSlicerScalarVolumeDisplayWidget.h │ │ ├── qSlicerVolumeDisplayWidget.cxx │ │ └── qSlicerVolumeDisplayWidget.h │ │ ├── qSlicerVolumesIOOptionsWidget.cxx │ │ ├── qSlicerVolumesIOOptionsWidget.h │ │ ├── qSlicerVolumesModule.cxx │ │ ├── qSlicerVolumesModule.h │ │ ├── qSlicerVolumesModuleWidget.cxx │ │ ├── qSlicerVolumesModuleWidget.h │ │ ├── qSlicerVolumesReader.cxx │ │ └── qSlicerVolumesReader.h └── Scripted │ ├── CMakeLists.txt │ ├── DICOM │ ├── CMakeLists.txt │ ├── DICOM.py │ ├── DICOM.xml │ ├── DICOMExtensions.json │ └── Resources │ │ └── UI │ │ └── DICOM.ui │ ├── DICOMLib │ ├── CMakeLists.txt │ ├── DICOMBrowser.py │ ├── DICOMExportScalarVolume.py │ ├── DICOMExportScene.py │ ├── DICOMPlugin.py │ ├── DICOMPluginSelector.py │ ├── DICOMProcesses.py │ ├── DICOMRecentActivityWidget.py │ ├── DICOMSendDialog.py │ ├── DICOMUtils.py │ ├── Logic │ │ ├── CMakeLists.txt │ │ ├── vtkSlicerDICOMExportable.cxx │ │ ├── vtkSlicerDICOMExportable.h │ │ ├── vtkSlicerDICOMLoadable.cxx │ │ └── vtkSlicerDICOMLoadable.h │ ├── SubjectHierarchyPlugins │ │ ├── CMakeLists.txt │ │ ├── qSlicerSubjectHierarchyDICOMPlugin.cxx │ │ └── qSlicerSubjectHierarchyDICOMPlugin.h │ ├── Widgets │ │ ├── CMakeLists.txt │ │ ├── DesignerPlugins │ │ │ ├── CMakeLists.txt │ │ │ ├── qSlicerDICOMLibModuleWidgetsAbstractPlugin.cxx │ │ │ ├── qSlicerDICOMLibModuleWidgetsAbstractPlugin.h │ │ │ ├── qSlicerDICOMLibModuleWidgetsPlugin.cxx │ │ │ ├── qSlicerDICOMLibModuleWidgetsPlugin.h │ │ │ ├── qSlicerDICOMTagEditorWidgetPlugin.cxx │ │ │ └── qSlicerDICOMTagEditorWidgetPlugin.h │ │ ├── Resources │ │ │ └── UI │ │ │ │ └── qSlicerDICOMExportDialog.ui │ │ ├── qSlicerDICOMExportDialog.cxx │ │ ├── qSlicerDICOMExportDialog.h │ │ ├── qSlicerDICOMExportable.cxx │ │ ├── qSlicerDICOMExportable.h │ │ ├── qSlicerDICOMLoadable.cxx │ │ ├── qSlicerDICOMLoadable.h │ │ ├── qSlicerDICOMTagEditorWidget.cxx │ │ └── qSlicerDICOMTagEditorWidget.h │ └── __init__.py │ ├── DICOMPatcher │ ├── CMakeLists.txt │ ├── DICOMPatcher.py │ └── Resources │ │ └── Icons │ │ └── DICOMPatcher.png │ ├── DICOMPlugins │ ├── CMakeLists.txt │ ├── DICOMScalarVolumePlugin.py │ └── DICOMSlicerDataBundlePlugin.py │ ├── DMRIInstall │ ├── CMakeLists.txt │ └── DMRIInstall.py │ ├── DataProbe │ ├── CMakeLists.txt │ ├── DataProbe.py │ ├── DataProbeLib │ │ ├── DataProbeUtil.py │ │ ├── Resources │ │ │ └── UI │ │ │ │ └── settings.ui │ │ ├── SliceViewAnnotations.py │ │ └── __init__.py │ ├── Logic │ │ ├── CMakeLists.txt │ │ ├── vtkPVScalarBarActor.cxx │ │ └── vtkPVScalarBarActor.h │ └── Resources │ │ └── Icons │ │ └── SlicerAdvancedGear-Small.png │ ├── Editor │ ├── CMakeLists.txt │ └── Editor.py │ ├── EditorLib │ ├── CMakeLists.txt │ ├── ChangeIslandEffect.py │ ├── ChangeLabelEffect.py │ ├── ColorBox.py │ ├── DilateEffect.py │ ├── DrawEffect.py │ ├── EditBox.py │ ├── EditColor.py │ ├── EditOptions.py │ ├── EditUtil.py │ ├── Effect.py │ ├── ErodeEffect.py │ ├── FastMarchingEffect.py │ ├── GrowCutEffect.py │ ├── HelperBox.py │ ├── IdentifyIslandsEffect.py │ ├── IslandEffect.py │ ├── LabelCreateDialog.py │ ├── LabelEffect.py │ ├── LabelStructureListWidget.py │ ├── LevelTracingEffect.py │ ├── Logic │ │ ├── CMakeLists.txt │ │ ├── vtkImageConnectivity.cxx │ │ ├── vtkImageConnectivity.h │ │ ├── vtkImageErode.cxx │ │ ├── vtkImageErode.h │ │ ├── vtkImageLabelChange.cxx │ │ ├── vtkImageLabelChange.h │ │ ├── vtkImageSlicePaint.cxx │ │ ├── vtkImageSlicePaint.h │ │ ├── vtkImageStash.cxx │ │ ├── vtkImageStash.h │ │ ├── vtkPichonFastMarching.cxx │ │ ├── vtkPichonFastMarching.h │ │ ├── vtkPichonFastMarchingPDF.cxx │ │ └── vtkPichonFastMarchingPDF.h │ ├── MakeModelEffect.py │ ├── MorphologyEffect.py │ ├── PaintEffect.py │ ├── RectangleEffect.py │ ├── RemoveIslandsEffect.py │ ├── Resources │ │ └── Icons │ │ │ ├── ChangeIsland.png │ │ │ ├── ChangeLabel.png │ │ │ ├── DefaultTool.png │ │ │ ├── DilateLabel.png │ │ │ ├── Draw.png │ │ │ ├── EraseLabel.png │ │ │ ├── ErodeLabel.png │ │ │ ├── FastMarchingEffect.png │ │ │ ├── GrowCutSegment.png │ │ │ ├── IdentifyIslands.png │ │ │ ├── ImplicitRectangle.png │ │ │ ├── LevelTracing.png │ │ │ ├── MakeModel.png │ │ │ ├── NextCheckPoint.png │ │ │ ├── Paint.png │ │ │ ├── PreviousCheckPoint.png │ │ │ ├── RemoveIslands.png │ │ │ ├── SaveIsland.png │ │ │ ├── Threshold.png │ │ │ ├── ToolbarEditorToolbox.png │ │ │ ├── WandEffect.png │ │ │ └── WatershedFromMarkerEffect.png │ ├── SaveIslandEffect.py │ ├── Testing │ │ ├── CMakeLists.txt │ │ ├── StandaloneEditorWidgetTest.py │ │ └── ThresholdThreadingTest.py │ ├── ThresholdEffect.py │ ├── WandEffect.py │ ├── WatershedFromMarkerEffect.py │ └── __init__.py │ ├── Endoscopy │ ├── CMakeLists.txt │ ├── Endoscopy.py │ └── Endoscopy.xml │ ├── ExtensionWizard │ ├── CMakeLists.txt │ ├── ExtensionWizard.py │ └── ExtensionWizardLib │ │ ├── CreateComponentDialog.py │ │ ├── DirectoryListWidget.py │ │ ├── EditExtensionMetadataDialog.py │ │ ├── EditableTreeWidget.py │ │ ├── ExtensionWizard.qrc │ │ ├── Icons │ │ ├── ExtensionWizard.png │ │ ├── ExtensionWizard.svg │ │ ├── Medium │ │ │ ├── ExtensionWizard.png │ │ │ └── ExtensionWizard.svg │ │ ├── XLarge │ │ │ └── ExtensionWizard.png │ │ └── XSmall │ │ │ └── ExtensionWizard.png │ │ ├── LoadModulesDialog.py │ │ ├── ModuleInfo.py │ │ ├── SettingsPanel.py │ │ ├── TemplatePathUtilities.py │ │ └── __init__.py │ ├── LabelStatistics │ ├── CMakeLists.txt │ ├── LabelStatistics.py │ ├── Resources │ │ └── Icons │ │ │ └── LabelStatistics.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt │ ├── PerformanceTests │ ├── CMakeLists.txt │ └── PerformanceTests.py │ ├── SampleData │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ ├── BaselineVolume.png │ │ │ ├── CTACardio.png │ │ │ ├── CTBrain.png │ │ │ ├── CTChest.png │ │ │ ├── DTIBrain.png │ │ │ ├── DTIVolume.png │ │ │ ├── MRBrainTumor1.png │ │ │ ├── MRBrainTumor2.png │ │ │ ├── MRHead.png │ │ │ ├── MRProstate.png │ │ │ ├── Panoramix-cropped.png │ │ │ ├── PreDentalSurgery.png │ │ │ ├── TinyPatient.png │ │ │ └── dwi.png │ └── SampleData.py │ ├── ScreenCapture │ ├── CMakeLists.txt │ ├── Resources │ │ ├── Icons │ │ │ └── ScreenCapture.png │ │ └── SlicerWatermark.png │ └── ScreenCapture.py │ ├── SegmentEditor │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ └── SegmentEditor.png │ ├── SegmentEditor.py │ └── SubjectHierarchyPlugins │ │ ├── CMakeLists.txt │ │ └── SegmentEditorSubjectHierarchyPlugin.py │ ├── SegmentStatistics │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ └── SegmentStatistics.png │ ├── SegmentStatistics.py │ ├── SegmentStatisticsPlugins │ │ ├── CMakeLists.txt │ │ ├── ClosedSurfaceSegmentStatisticsPlugin.py │ │ ├── LabelmapSegmentStatisticsPlugin.py │ │ ├── ScalarVolumeSegmentStatisticsPlugin.py │ │ ├── SegmentStatisticsPluginBase.py │ │ └── __init__.py │ ├── SubjectHierarchyPlugins │ │ ├── CMakeLists.txt │ │ └── SegmentStatisticsSubjectHierarchyPlugin.py │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt │ ├── SelfTests │ ├── CMakeLists.txt │ └── SelfTests.py │ └── VectorToScalarVolume │ ├── CMakeLists.txt │ └── VectorToScalarVolume.py ├── README.txt ├── Resources ├── 3DSlicer-DesktopIcon.png ├── 3DSlicerLogo-app-icon-centered.png ├── 3DSlicerLogo-app-icon.svg ├── BillsLogo.h ├── CMakeLists.txt ├── ITKLogo.h ├── Logos │ ├── 3DSlicerLogo-HorizontalF.svg │ ├── BIRN-NoText.png │ ├── BIRN.png │ ├── Bills.png │ ├── BrainScienceFoundation.png │ ├── CIMIT.png │ ├── CISST.png │ ├── CSAIL.png │ ├── CTSC.png │ ├── Gatech.png │ ├── Geresearch.png │ ├── HCNR.png │ ├── ITK.png │ ├── Isomics.png │ ├── Kitware.png │ ├── MC.png │ ├── MIT.png │ ├── MIT_NAMIC_PNL.png │ ├── NAC.png │ ├── NAMIC.png │ ├── NCI.png │ ├── NCIGT.png │ ├── NCRR.png │ ├── NIBIB.png │ ├── NIH.png │ ├── NITRC.png │ ├── PNL.png │ ├── QIICR.png │ ├── SCI.png │ ├── SPL.png │ └── TATRC.png ├── MITLogo.h ├── MIT_NAMIC_Logo.h ├── MIT_NAMIC_PNL_Logo.h ├── NAMICLogo.h ├── ParameterSets │ └── RegisterImagesPresets.mrml └── qSlicer.qrc ├── SuperBuild.cmake ├── SuperBuild ├── External_CTK.cmake ├── External_CTKAPPLAUNCHER.cmake ├── External_CTKAppLauncherLib.cmake ├── External_CTKResEdit.cmake ├── External_DCMTK.cmake ├── External_ITK.cmake ├── External_JsonCpp.cmake ├── External_LibArchive.cmake ├── External_OpenSSL.cmake ├── External_PCRE.cmake ├── External_ParameterSerializer.cmake ├── External_RapidJSON.cmake ├── External_SimpleITK.cmake ├── External_SlicerExecutionModel.cmake ├── External_Swig.cmake ├── External_VTK.cmake ├── External_bzip2.cmake ├── External_curl.cmake ├── External_incrTcl.cmake ├── External_python-dicom-requirements.cmake ├── External_python-ensurepip.cmake ├── External_python-extension-manager-requirements.cmake ├── External_python-extension-manager-ssl-requirements.cmake ├── External_python-numpy.cmake ├── External_python-pip.cmake ├── External_python-pythonqt-requirements.cmake ├── External_python-requests-requirements.cmake ├── External_python-scipy.cmake ├── External_python-setuptools.cmake ├── External_python-wheel.cmake ├── External_python.cmake ├── External_qRestAPI.cmake ├── External_sqlite.cmake ├── External_tbb.cmake ├── External_tcl.cmake ├── External_teem.cmake ├── External_tk.cmake ├── External_zlib.cmake ├── python_configure_lsb_release_wrapper.cmake └── python_configure_python_launcher.cmake ├── Testing ├── CMakeLists.txt ├── Data │ └── Input │ │ ├── ACPC.fcsv │ │ ├── ACPCTest.mrml │ │ ├── BSplineDisplacements3D_00.txt │ │ ├── CTHeadAxialDicom │ │ ├── CTHead1.dcm │ │ ├── CTHead10.dcm │ │ ├── CTHead11.dcm │ │ ├── CTHead12.dcm │ │ ├── CTHead13.dcm │ │ ├── CTHead14.dcm │ │ ├── CTHead15.dcm │ │ ├── CTHead16.dcm │ │ ├── CTHead17.dcm │ │ ├── CTHead18.dcm │ │ ├── CTHead19.dcm │ │ ├── CTHead2.dcm │ │ ├── CTHead20.dcm │ │ ├── CTHead21.dcm │ │ ├── CTHead22.dcm │ │ ├── CTHead23.dcm │ │ ├── CTHead24.dcm │ │ ├── CTHead25.dcm │ │ ├── CTHead26.dcm │ │ ├── CTHead27.dcm │ │ ├── CTHead28.dcm │ │ ├── CTHead29.dcm │ │ ├── CTHead3.dcm │ │ ├── CTHead30.dcm │ │ ├── CTHead31.dcm │ │ ├── CTHead32.dcm │ │ ├── CTHead33.dcm │ │ ├── CTHead34.dcm │ │ ├── CTHead35.dcm │ │ ├── CTHead36.dcm │ │ ├── CTHead37.dcm │ │ ├── CTHead38.dcm │ │ ├── CTHead39.dcm │ │ ├── CTHead4.dcm │ │ ├── CTHead40.dcm │ │ ├── CTHead41.dcm │ │ ├── CTHead42.dcm │ │ ├── CTHead43.dcm │ │ ├── CTHead44.dcm │ │ ├── CTHead45.dcm │ │ ├── CTHead46.dcm │ │ ├── CTHead47.dcm │ │ ├── CTHead48.dcm │ │ ├── CTHead49.dcm │ │ ├── CTHead5.dcm │ │ ├── CTHead50.dcm │ │ ├── CTHead51.dcm │ │ ├── CTHead52.dcm │ │ ├── CTHead53.dcm │ │ ├── CTHead54.dcm │ │ ├── CTHead55.dcm │ │ ├── CTHead56.dcm │ │ ├── CTHead57.dcm │ │ ├── CTHead58.dcm │ │ ├── CTHead59.dcm │ │ ├── CTHead6.dcm │ │ ├── CTHead60.dcm │ │ ├── CTHead61.dcm │ │ ├── CTHead62.dcm │ │ ├── CTHead63.dcm │ │ ├── CTHead64.dcm │ │ ├── CTHead65.dcm │ │ ├── CTHead66.dcm │ │ ├── CTHead67.dcm │ │ ├── CTHead68.dcm │ │ ├── CTHead69.dcm │ │ ├── CTHead7.dcm │ │ ├── CTHead70.dcm │ │ ├── CTHead71.dcm │ │ ├── CTHead72.dcm │ │ ├── CTHead73.dcm │ │ ├── CTHead74.dcm │ │ ├── CTHead75.dcm │ │ ├── CTHead76.dcm │ │ ├── CTHead77.dcm │ │ ├── CTHead78.dcm │ │ ├── CTHead79.dcm │ │ ├── CTHead8.dcm │ │ ├── CTHead80.dcm │ │ ├── CTHead81.dcm │ │ ├── CTHead82.dcm │ │ ├── CTHead83.dcm │ │ ├── CTHead84.dcm │ │ ├── CTHead85.dcm │ │ ├── CTHead86.dcm │ │ ├── CTHead87.dcm │ │ ├── CTHead88.dcm │ │ ├── CTHead89.dcm │ │ ├── CTHead9.dcm │ │ ├── CTHead90.dcm │ │ ├── CTHead91.dcm │ │ ├── CTHead92.dcm │ │ └── CTHead93.dcm │ │ ├── ExecutionModelTourTest.mrml │ │ ├── MRHeadResampledBSplineTransform.tfm │ │ ├── ModelMakerTest.mrml │ │ ├── itkQuaternionRigidTransform00.txt │ │ ├── itkQuaternionRigidTransform01.txt │ │ ├── itkQuaternionRigidTransform02.txt │ │ ├── itkQuaternionRigidTransform03.txt │ │ ├── itkQuaternionRigidTransform04.txt │ │ ├── midsag.fcsv │ │ └── philips_ingenia_4_1_3_dwi.dcm ├── ModelRender.py ├── SimpleNUMPYTest.py └── TextureModel.py └── Utilities ├── Doxygen ├── CMakeLists.txt ├── Doxyfile.txt.in ├── DoxygenLayout.xml ├── SlicerMainPage.dox └── toThreeSlashes.sh ├── KWStyle └── ITK.kws.xml ├── Scripts ├── CMakeLists.txt ├── ExtensionWizard.py ├── GitTips.sh ├── ModuleWizard.py ├── SEMToMediaWiki.py ├── SetupHooks.sh ├── SetupUser.sh ├── SlicerWizard │ ├── .gitattributes │ ├── CMakeLists.txt │ ├── CMakeParser.py │ ├── ExtensionDescription.py │ ├── ExtensionProject.py │ ├── ExtensionWizard.py │ ├── GithubHelper.py │ ├── Subversion.py │ ├── TemplateManager.py │ ├── Utilities.py │ ├── WizardHelpFormatter.py │ ├── __init__.py │ ├── __version__.py │ ├── __version__.py.in │ └── doc │ │ ├── CMakeLists.txt │ │ ├── SlicerWizard.rst │ │ ├── conf.py │ │ ├── create_doc_tarball.cmake │ │ └── index.rst ├── computeCodeCoverageForOneTest.sh.in ├── computeCodeCoverageLocally.sh.in ├── genqrc.py ├── qrcc.py ├── runCodespell.sh ├── runExperimentalOffScreen.sh.in ├── runValgrind.sh.in ├── setupSlicerEnvironment.sh.in ├── slicerExtensionWizard-install.sh.in └── slicerExtensionWizard.sh.in ├── SetupForDevelopment.sh └── Templates ├── CMakeLists.txt ├── Extensions ├── Default │ ├── CMakeLists.txt │ └── TemplateKey.png ├── SuperBuild │ ├── CMakeLists.txt │ ├── CTestConfig.cmake │ ├── SuperBuild.cmake │ └── SuperBuild │ │ └── External_Foo.cmake └── extension_description.s4ext.in └── Modules ├── CLI ├── CMakeLists.txt ├── Data │ ├── Baseline │ │ ├── TemplateKeyTest.nhdr.md5 │ │ └── TemplateKeyTest.raw.md5 │ └── Input │ │ ├── CTHeadAxial.nhdr.md5 │ │ └── CTHeadAxial.raw.gz.md5 ├── TemplateKey.cxx ├── TemplateKey.xml └── Testing │ ├── CMakeLists.txt │ └── Cxx │ ├── CMakeLists.txt │ └── TemplateKeyTest.cxx ├── Loadable ├── CMakeLists.txt ├── Logic │ ├── CMakeLists.txt │ ├── vtkSlicerTemplateKeyLogic.cxx │ └── vtkSlicerTemplateKeyLogic.h ├── Resources │ ├── Icons │ │ └── TemplateKey.png │ ├── UI │ │ ├── qSlicerTemplateKeyFooBarWidget.ui │ │ └── qSlicerTemplateKeyModuleWidget.ui │ └── qSlicerTemplateKeyModule.qrc ├── Testing │ ├── CMakeLists.txt │ └── Cxx │ │ └── CMakeLists.txt ├── Widgets │ ├── CMakeLists.txt │ ├── qSlicerTemplateKeyFooBarWidget.cxx │ └── qSlicerTemplateKeyFooBarWidget.h ├── qSlicerTemplateKeyModule.cxx ├── qSlicerTemplateKeyModule.h ├── qSlicerTemplateKeyModuleWidget.cxx └── qSlicerTemplateKeyModuleWidget.h ├── Scripted ├── CMakeLists.txt ├── Resources │ └── Icons │ │ └── TemplateKey.png ├── TemplateKey.py └── Testing │ ├── CMakeLists.txt │ └── Python │ └── CMakeLists.txt ├── ScriptedDesigner ├── CMakeLists.txt ├── Resources │ ├── Icons │ │ └── TemplateKey.png │ └── UI │ │ └── TemplateKey.ui ├── TemplateKey.py └── Testing │ ├── CMakeLists.txt │ └── Python │ └── CMakeLists.txt ├── ScriptedEditorEffect ├── CMakeLists.txt ├── TemplateKeyEffect.png ├── TemplateKeyEffect.py └── Testing │ └── CMakeLists.txt └── ScriptedSegmentEditorEffect ├── CMakeLists.txt ├── SegmentEditorTemplateKey.py ├── SegmentEditorTemplateKeyLib ├── SegmentEditorEffect.png 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