├── .gitignore ├── 01_Data_loading_and_display.ipynb ├── 02_Data_processing.ipynb ├── 03_Image_Processing_using_SimpleITK.ipynb ├── 04_Segmentation.ipynb ├── 05_SlicerDockerNotebook.ipynb ├── Dockerfile ├── LICENSE ├── README.md ├── SlicerWeb.ipynb ├── VolumeThresholdPlot.ipynb ├── data ├── MRBrainTumor1.nrrd └── ProstateMeanShape.stl ├── outputs └── README.md └── start /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/.gitignore -------------------------------------------------------------------------------- /01_Data_loading_and_display.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/01_Data_loading_and_display.ipynb -------------------------------------------------------------------------------- /02_Data_processing.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/02_Data_processing.ipynb -------------------------------------------------------------------------------- /03_Image_Processing_using_SimpleITK.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/03_Image_Processing_using_SimpleITK.ipynb -------------------------------------------------------------------------------- /04_Segmentation.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/04_Segmentation.ipynb -------------------------------------------------------------------------------- /05_SlicerDockerNotebook.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/05_SlicerDockerNotebook.ipynb -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/README.md -------------------------------------------------------------------------------- /SlicerWeb.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/SlicerWeb.ipynb -------------------------------------------------------------------------------- /VolumeThresholdPlot.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/VolumeThresholdPlot.ipynb -------------------------------------------------------------------------------- /data/MRBrainTumor1.nrrd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/data/MRBrainTumor1.nrrd -------------------------------------------------------------------------------- /data/ProstateMeanShape.stl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/data/ProstateMeanShape.stl -------------------------------------------------------------------------------- /outputs/README.md: -------------------------------------------------------------------------------- 1 | Notebooks write output files into this folder. 2 | -------------------------------------------------------------------------------- /start: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Slicer/SlicerNotebooks/HEAD/start --------------------------------------------------------------------------------