├── .github └── workflows │ └── pypi-publish.yml ├── .gitignore ├── .readthedocs.yml ├── CITATION.cff ├── CONTRIBUTING.md ├── Dockerfile ├── Dockerfile_old ├── LICENSE ├── MANIFEST.in ├── README.md ├── docs ├── images │ ├── code_inspector_json_viewer.png │ ├── data_flow.png │ ├── logo.png │ ├── logo_old.png │ ├── visual_code.png │ └── visual_code_inspector.png ├── index.md ├── install.md ├── output.md ├── requirements.txt └── usage.md ├── evaluation ├── software_invocation_deprecated │ ├── README.md │ ├── evaluation_summary.csv │ ├── execution_commands_python_benchmark.csv │ └── execution_commands_python_old.csv └── software_type │ ├── README.md │ ├── evaluation_summary.csv │ ├── evaluation_summary_scripts_ndcg.csv │ ├── evaluation_summary_scripts_precision_recall.csv │ └── software_type_benchmark.csv ├── inspect4py ├── __init__.py ├── build.py ├── cli.py ├── evaluation │ ├── readme.md │ ├── run_software_invocation_evaluation_deprecated.py │ └── run_software_type_evaluation.py ├── licenses │ ├── 0bsd.txt │ ├── afl-3.0.txt │ ├── agpl-3.0.txt │ ├── apache-2.0.txt │ ├── artistic-2.0.txt │ ├── bsd-2-clause.txt │ ├── bsd-3-clause-clear.txt │ ├── bsd-3-clause.txt │ ├── bsd-4-clause.txt │ ├── bsl-1.0.txt │ ├── cc-by-4.0.txt │ ├── cc-by-sa-4.0.txt │ ├── cc0-1.0.txt │ ├── cecill-2.1.txt │ ├── cern-ohl-p-2.0.txt │ ├── cern-ohl-s-2.0.txt │ ├── cern-ohl-w-2.0.txt │ ├── ecl-2.0.txt │ ├── epl-1.0.txt │ ├── epl-2.0.txt │ ├── eupl-1.1.txt │ ├── eupl-1.2.txt │ ├── gpl-2.0.txt │ ├── gpl-3.0.txt │ ├── isc.txt │ ├── lgpl-2.1.txt │ ├── lgpl-3.0.txt │ ├── lppl-1.3c.txt │ ├── mit-0.txt │ ├── mit.txt │ ├── mpl-2.0.txt │ ├── ms-pl.txt │ ├── ms-rl.txt │ ├── mulanpsl-2.0.txt │ ├── ncsa.txt │ ├── odbl-1.0.txt │ ├── ofl-1.1.txt │ ├── osl-3.0.txt │ ├── postgresql.txt │ ├── unlicense.txt │ ├── upl-1.0.txt │ ├── vim.txt │ ├── wtfpl.txt │ └── zlib.txt ├── old │ └── code_visualization.py ├── parse_setup_files.py ├── resources │ ├── python_mac.so │ ├── python_unix.so │ └── python_win.so ├── staticfg │ ├── __init__.py │ ├── builder.py │ └── model.py ├── structure_tree.py └── utils.py ├── inspect4py_pycg ├── README.md └── pycg_convert.py ├── mkdocs.yml ├── pyproject.toml ├── requirements.txt ├── requirements_eval.txt ├── setup.py └── test ├── __init__.py ├── test_files ├── BoostingMonocularDepth │ ├── .gitignore │ ├── Boostmonoculardepth.ipynb │ ├── LICENSE │ ├── README.md │ ├── dataset_prepare │ │ ├── create_crops.m │ │ ├── generatecrops.m │ │ ├── ibims1_prepare.m │ │ ├── ibims1_selected.mat │ │ ├── mergenet_dataset_prepare.md │ │ └── midas │ │ │ ├── models │ │ │ ├── base_model.py │ │ │ ├── blocks.py │ │ │ ├── midas_net.py │ │ │ └── transforms.py │ │ │ ├── run.py │ │ │ └── utils.py │ ├── demo.py │ ├── evaluation │ │ ├── D3R.m │ │ ├── evaluatedataset.m │ │ ├── extractD3Rpoints.m │ │ ├── index2index.m │ │ └── ord.m │ ├── lib │ │ ├── Resnet.py │ │ ├── Resnext_torch.py │ │ ├── __init__.py │ │ ├── multi_depth_model_woauxi.py │ │ ├── net_tools.py │ │ ├── network_auxi.py │ │ ├── spvcnn_classsification.py │ │ ├── spvcnn_utils.py │ │ └── test_utils.py │ ├── midas │ │ ├── models │ │ │ ├── base_model.py │ │ │ ├── blocks.py │ │ │ ├── midas_net.py │ │ │ └── transforms.py │ │ └── utils.py │ ├── pix2pix │ │ ├── data │ │ │ ├── __init__.py │ │ │ ├── base_dataset.py │ │ │ ├── depthmerge_dataset.py │ │ │ └── image_folder.py │ │ ├── models │ │ │ ├── __init__.py │ │ │ ├── base_model.py │ │ │ ├── base_model_hg.py │ │ │ ├── networks.py │ │ │ └── pix2pix4depth_model.py │ │ ├── options │ │ │ ├── __init__.py │ │ │ ├── base_options.py │ │ │ ├── test_options.py │ │ │ └── train_options.py │ │ ├── test.py │ │ ├── train.py │ │ └── util │ │ │ ├── __init__.py │ │ │ ├── get_data.py │ │ │ ├── guidedfilter.py │ │ │ ├── html.py │ │ │ ├── image_pool.py │ │ │ ├── util.py │ │ │ └── visualizer.py │ ├── requirements.txt │ ├── run.py │ ├── structuredrl │ │ └── models │ │ │ ├── DepthNet.py │ │ │ ├── networks.py │ │ │ ├── resnet.py │ │ │ └── syncbn │ │ │ ├── LICENSE │ │ │ ├── README.md │ │ │ ├── make_ext.sh │ │ │ ├── modules │ │ │ ├── __init__.py │ │ │ ├── functional │ │ │ │ ├── __init__.py │ │ │ │ ├── _syncbn │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── _ext │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ └── syncbn │ │ │ │ │ │ │ └── __init__.py │ │ │ │ │ ├── build.py │ │ │ │ │ └── src │ │ │ │ │ │ ├── common.h │ │ │ │ │ │ ├── syncbn.cpp │ │ │ │ │ │ ├── syncbn.cu │ │ │ │ │ │ ├── syncbn.cu.h │ │ │ │ │ │ ├── syncbn.cu.o │ │ │ │ │ │ └── syncbn.h │ │ │ │ └── syncbn.py │ │ │ └── nn │ │ │ │ ├── __init__.py │ │ │ │ └── syncbn.py │ │ │ ├── requirements.txt │ │ │ └── test.py │ └── utils.py ├── Chowlk │ ├── LICENSE │ ├── README.md │ ├── app.py │ ├── config.py │ ├── converter.py │ ├── data │ │ ├── aio.xml │ │ ├── building.xml │ │ ├── building_failing.xml │ │ ├── cogito-onto.xml │ │ ├── discovery.xml │ │ ├── example.xml │ │ ├── example2.xml │ │ ├── final_ontology_cesar.xml │ │ ├── forecasting1.xml │ │ ├── jhon.xml │ │ ├── jon.xml │ │ ├── occupancy_profile.xml │ │ ├── prueba.xml │ │ ├── prueba_fallo.xml │ │ ├── renovation_processes.xml │ │ ├── saref4building.xml │ │ ├── test-data.xml │ │ ├── test.data.drawio │ │ └── wot-discovery-chowlk.xml │ ├── output │ │ └── occupancy_profile.owl │ ├── pyproject.toml │ ├── source │ │ └── chowlk │ │ │ ├── __init__.py │ │ │ ├── associations.py │ │ │ ├── finding.py │ │ │ ├── geometry.py │ │ │ ├── transformations.py │ │ │ ├── utils.py │ │ │ └── writer.py │ ├── static │ │ ├── css │ │ │ ├── poster.css │ │ │ └── style.css │ │ ├── js │ │ │ └── sketch.js │ │ └── resources │ │ │ ├── architecture.png │ │ │ ├── bimerr-logo.jpg │ │ │ ├── example.png │ │ │ ├── fi-logo.png │ │ │ ├── input-gui.png │ │ │ ├── logo.png │ │ │ ├── logo.svg │ │ │ ├── notation_v2.svg │ │ │ ├── oeg-logo.gif │ │ │ ├── output.png │ │ │ └── upm-logo.png │ ├── templates │ │ ├── chowlk_poster.html │ │ ├── home.html │ │ └── output.html │ └── tests │ │ ├── inputs │ │ ├── test_attributes_1.xml │ │ ├── test_attributes_10.xml │ │ ├── test_attributes_11.xml │ │ ├── test_attributes_12.xml │ │ ├── test_attributes_13.xml │ │ ├── test_attributes_2.xml │ │ ├── test_attributes_3.xml │ │ ├── test_attributes_4.xml │ │ ├── test_attributes_5.xml │ │ ├── test_attributes_6.xml │ │ ├── test_attributes_7.xml │ │ ├── test_attributes_8.xml │ │ ├── test_attributes_9.xml │ │ ├── test_disjoint_1.xml │ │ ├── test_disjoint_2.xml │ │ ├── test_equivalence_1.xml │ │ ├── test_equivalence_2.xml │ │ ├── test_individuals_1.xml │ │ ├── test_individuals_2.xml │ │ ├── test_intersection_1.xml │ │ ├── test_intersection_2.xml │ │ ├── test_relations_1.xml │ │ ├── test_relations_10.xml │ │ ├── test_relations_11.xml │ │ ├── test_relations_12.xml │ │ ├── test_relations_13.xml │ │ ├── test_relations_14.xml │ │ ├── test_relations_15.xml │ │ ├── test_relations_16.xml │ │ ├── test_relations_17.xml │ │ ├── test_relations_18.xml │ │ ├── test_relations_19.xml │ │ ├── test_relations_2.xml │ │ ├── test_relations_20.xml │ │ ├── test_relations_21.xml │ │ ├── test_relations_22.xml │ │ ├── test_relations_23.xml │ │ ├── test_relations_24.xml │ │ ├── test_relations_3.xml │ │ ├── test_relations_4.xml │ │ ├── test_relations_5.xml │ │ ├── test_relations_6.xml │ │ ├── test_relations_7.xml │ │ ├── test_relations_8.xml │ │ ├── test_relations_9.xml │ │ ├── test_subclass_1.xml │ │ ├── test_subclass_2.xml │ │ ├── test_union_1.xml │ │ └── test_union_2.xml │ │ ├── outputs │ │ ├── test_attributes_1.owl │ │ ├── test_attributes_10.owl │ │ ├── test_attributes_11.owl │ │ ├── test_attributes_12.owl │ │ ├── test_attributes_13.owl │ │ ├── test_attributes_2.owl │ │ ├── test_attributes_3.owl │ │ ├── test_attributes_4.owl │ │ ├── test_attributes_5.owl │ │ ├── test_attributes_6.owl │ │ ├── test_attributes_7.owl │ │ ├── test_attributes_8.owl │ │ ├── test_attributes_9.owl │ │ ├── test_disjoint_1.owl │ │ ├── test_disjoint_2.owl │ │ ├── test_equivalence_1.owl │ │ ├── test_equivalence_2.owl │ │ ├── test_individuals_1.owl │ │ ├── test_individuals_2.owl │ │ ├── test_intersection_1.owl │ │ ├── test_intersection_2.owl │ │ ├── test_relations_1.owl │ │ ├── test_relations_10.owl │ │ ├── test_relations_11.owl │ │ ├── test_relations_12.owl │ │ ├── test_relations_13.owl │ │ ├── test_relations_14.owl │ │ ├── test_relations_15.owl │ │ ├── test_relations_16.owl │ │ ├── test_relations_17.owl │ │ ├── test_relations_18.owl │ │ ├── test_relations_19.owl │ │ ├── test_relations_2.owl │ │ ├── test_relations_20.owl │ │ ├── test_relations_21.owl │ │ ├── test_relations_22.owl │ │ ├── test_relations_23.owl │ │ ├── test_relations_24.owl │ │ ├── test_relations_3.owl │ │ ├── test_relations_4.owl │ │ ├── test_relations_5.owl │ │ ├── test_relations_6.owl │ │ ├── test_relations_7.owl │ │ ├── test_relations_8.owl │ │ ├── test_relations_9.owl │ │ ├── test_subclass_1.owl │ │ ├── test_subclass_2.owl │ │ ├── test_union_1.owl │ │ └── test_union_2.owl │ │ └── test_finding.py ├── __init__.py ├── demo │ ├── __init__.py │ ├── demo_20_password │ │ ├── Makefile │ │ ├── README.md │ │ ├── __init__.py │ │ ├── all_test.sh │ │ ├── const │ │ │ ├── adjs.txt │ │ │ ├── nouns.txt │ │ │ └── verbs.txt │ │ ├── harvest.py │ │ ├── inputs │ │ │ ├── .gitignore │ │ │ ├── Makefile │ │ │ ├── const.txt │ │ │ ├── dickinson.txt │ │ │ ├── fox.txt │ │ │ ├── gettysburg.txt │ │ │ ├── issa.txt │ │ │ ├── nobody.txt │ │ │ ├── now.txt │ │ │ ├── out.txt │ │ │ ├── preamble.txt │ │ │ ├── scarlet.txt │ │ │ ├── sonnet-29.txt │ │ │ ├── sonnets.txt │ │ │ ├── spiders.txt │ │ │ ├── the-bustle.txt │ │ │ ├── usdeclar.txt │ │ │ └── words.txt.zip │ │ ├── password.py │ │ ├── scarlet │ │ │ ├── adjs.txt │ │ │ ├── nouns.txt │ │ │ └── verbs.txt │ │ ├── sonnets │ │ │ ├── adjs.txt │ │ │ ├── nouns.txt │ │ │ └── verbs.txt │ │ ├── test.py │ │ └── unit.py │ ├── demo_example_argparse.py │ ├── demo_example_class.py │ ├── demo_example_func_main.py │ └── demo_example_inheritance.py ├── pylops │ ├── .coveragerc │ ├── .gitignore │ ├── .travis.yml │ ├── CHANGELOG.md │ ├── CODE_OF_CONDUCT.md │ ├── CONTRIBUTING.md │ ├── LICENSE.md │ ├── MANIFEST.in │ ├── Makefile │ ├── README.md │ ├── azure-pipelines.yml │ ├── docs │ │ ├── Makefile │ │ └── source │ │ │ ├── _static │ │ │ ├── favicon.ico │ │ │ ├── pylops.png │ │ │ ├── pylops_b.png │ │ │ └── style.css │ │ │ ├── _templates │ │ │ ├── autosummary │ │ │ │ ├── base.rst │ │ │ │ ├── class.rst │ │ │ │ ├── exception.rst │ │ │ │ ├── function.rst │ │ │ │ └── module.rst │ │ │ ├── breadcrumbs.html │ │ │ └── layout.html │ │ │ ├── adding.rst │ │ │ ├── api │ │ │ ├── index.rst │ │ │ └── others.rst │ │ │ ├── changelog.rst │ │ │ ├── citing.rst │ │ │ ├── conf.py │ │ │ ├── contributing.rst │ │ │ ├── credits.rst │ │ │ ├── extensions.rst │ │ │ ├── faq.rst │ │ │ ├── gpu.rst │ │ │ ├── index.rst │ │ │ ├── installation.rst │ │ │ ├── papers.rst │ │ │ ├── performance.rst │ │ │ └── roadmap.rst │ ├── environment-dev.yml │ ├── environment.yml │ ├── examples │ │ ├── README.txt │ │ ├── plot_avo.py │ │ ├── plot_bilinear.py │ │ ├── plot_causalintegration.py │ │ ├── plot_cgls.py │ │ ├── plot_chirpradon.py │ │ ├── plot_conj.py │ │ ├── plot_convolve.py │ │ ├── plot_derivative.py │ │ ├── plot_diagonal.py │ │ ├── plot_fft.py │ │ ├── plot_flip.py │ │ ├── plot_identity.py │ │ ├── plot_imag.py │ │ ├── plot_ista.py │ │ ├── plot_linearregr.py │ │ ├── plot_matrixmult.py │ │ ├── plot_mdc.py │ │ ├── plot_multiproc.py │ │ ├── plot_pad.py │ │ ├── plot_patching.py │ │ ├── plot_phaseshift.py │ │ ├── plot_prestack.py │ │ ├── plot_radon.py │ │ ├── plot_real.py │ │ ├── plot_regr.py │ │ ├── plot_restriction.py │ │ ├── plot_roll.py │ │ ├── plot_seislet.py │ │ ├── plot_seismicevents.py │ │ ├── plot_sliding.py │ │ ├── plot_slopeest.py │ │ ├── plot_smoothing1d.py │ │ ├── plot_smoothing2d.py │ │ ├── plot_stacking.py │ │ ├── plot_sum.py │ │ ├── plot_symmetrize.py │ │ ├── plot_tapers.py │ │ ├── plot_transpose.py │ │ ├── plot_tvreg.py │ │ ├── plot_wavelet.py │ │ ├── plot_wavest.py │ │ └── plot_zero.py │ ├── pylops │ │ ├── LinearOperator.py │ │ ├── __init__.py │ │ ├── avo │ │ │ ├── __init__.py │ │ │ ├── avo.py │ │ │ ├── poststack.py │ │ │ └── prestack.py │ │ ├── basicoperators │ │ │ ├── Block.py │ │ │ ├── BlockDiag.py │ │ │ ├── CausalIntegration.py │ │ │ ├── Conj.py │ │ │ ├── Diagonal.py │ │ │ ├── DirectionalDerivative.py │ │ │ ├── FirstDerivative.py │ │ │ ├── Flip.py │ │ │ ├── FunctionOperator.py │ │ │ ├── Gradient.py │ │ │ ├── HStack.py │ │ │ ├── Identity.py │ │ │ ├── Imag.py │ │ │ ├── Kronecker.py │ │ │ ├── Laplacian.py │ │ │ ├── LinearRegression.py │ │ │ ├── MatrixMult.py │ │ │ ├── MemoizeOperator.py │ │ │ ├── Pad.py │ │ │ ├── Real.py │ │ │ ├── Regression.py │ │ │ ├── Restriction.py │ │ │ ├── Roll.py │ │ │ ├── SecondDerivative.py │ │ │ ├── Smoothing1D.py │ │ │ ├── Smoothing2D.py │ │ │ ├── Spread.py │ │ │ ├── Sum.py │ │ │ ├── Symmetrize.py │ │ │ ├── Transpose.py │ │ │ ├── VStack.py │ │ │ ├── Zero.py │ │ │ ├── _Spread_numba.py │ │ │ └── __init__.py │ │ ├── optimization │ │ │ ├── __init__.py │ │ │ ├── eigs.py │ │ │ ├── leastsquares.py │ │ │ ├── solver.py │ │ │ └── sparsity.py │ │ ├── signalprocessing │ │ │ ├── Bilinear.py │ │ │ ├── ChirpRadon2D.py │ │ │ ├── ChirpRadon3D.py │ │ │ ├── Convolve1D.py │ │ │ ├── Convolve2D.py │ │ │ ├── ConvolveND.py │ │ │ ├── DWT.py │ │ │ ├── DWT2D.py │ │ │ ├── FFT.py │ │ │ ├── FFT2D.py │ │ │ ├── FFTND.py │ │ │ ├── Fredholm1.py │ │ │ ├── Interp.py │ │ │ ├── Patch2D.py │ │ │ ├── Radon2D.py │ │ │ ├── Radon3D.py │ │ │ ├── Seislet.py │ │ │ ├── Sliding1D.py │ │ │ ├── Sliding2D.py │ │ │ ├── Sliding3D.py │ │ │ ├── _ChirpRadon2D.py │ │ │ ├── _ChirpRadon3D.py │ │ │ ├── _Radon2D_numba.py │ │ │ ├── _Radon3D_numba.py │ │ │ └── __init__.py │ │ ├── utils │ │ │ ├── __init__.py │ │ │ ├── backend.py │ │ │ ├── deps.py │ │ │ ├── dottest.py │ │ │ ├── multiproc.py │ │ │ ├── seismicevents.py │ │ │ ├── signalprocessing.py │ │ │ ├── tapers.py │ │ │ ├── utils.py │ │ │ └── wavelets.py │ │ └── waveeqprocessing │ │ │ ├── __init__.py │ │ │ ├── lsm.py │ │ │ ├── marchenko.py │ │ │ ├── mdd.py │ │ │ ├── oneway.py │ │ │ ├── seismicinterpolation.py │ │ │ └── wavedecomposition.py │ ├── pytests │ │ ├── test_avo.py │ │ ├── test_basicoperators.py │ │ ├── test_causalintegration.py │ │ ├── test_chirpradon.py │ │ ├── test_combine.py │ │ ├── test_convolve.py │ │ ├── test_derivative.py │ │ ├── test_diagonal.py │ │ ├── test_directwave.py │ │ ├── test_dwts.py │ │ ├── test_eigs.py │ │ ├── test_ffts.py │ │ ├── test_fredholm.py │ │ ├── test_functionoperator.py │ │ ├── test_interpolation.py │ │ ├── test_kronecker.py │ │ ├── test_leastsquares.py │ │ ├── test_linearoperator.py │ │ ├── test_lsm.py │ │ ├── test_marchenko.py │ │ ├── test_memoizeoperator.py │ │ ├── test_oneway.py │ │ ├── test_pad.py │ │ ├── test_patching.py │ │ ├── test_poststack.py │ │ ├── test_prestack.py │ │ ├── test_radon.py │ │ ├── test_restriction.py │ │ ├── test_seislet.py │ │ ├── test_seismicevents.py │ │ ├── test_seismicinterpolation.py │ │ ├── test_signalutils.py │ │ ├── test_sliding.py │ │ ├── test_smoothing.py │ │ ├── test_solver.py │ │ ├── test_sparsity.py │ │ ├── test_tapers.py │ │ ├── test_transpose.py │ │ ├── test_utils.py │ │ ├── test_wavedecomposition.py │ │ ├── test_waveeqprocessing.py │ │ └── test_wavelets.py │ ├── readthedocs.yml │ ├── requirements-dev.txt │ ├── requirements.txt │ ├── setup.cfg │ ├── setup.py │ ├── testdata │ │ ├── optimization │ │ │ └── shepp_logan_phantom.npy │ │ ├── python.png │ │ └── sigmoid.npz │ └── tutorials │ │ ├── README.txt │ │ ├── bayesian.py │ │ ├── ctscan.py │ │ ├── deblurring.py │ │ ├── deghosting.py │ │ ├── dottest.py │ │ ├── interpolation.py │ │ ├── linearoperator.py │ │ ├── lsm.py │ │ ├── marchenko.py │ │ ├── mdd.py │ │ ├── poststack.py │ │ ├── prestack.py │ │ ├── radonfiltering.py │ │ ├── realcomplex.py │ │ ├── seismicinterpolation.py │ │ ├── solvers.py │ │ └── wavefielddecomposition.py ├── somef │ ├── Dockerfile │ ├── LICENSE │ ├── README.md │ ├── docs │ │ ├── index.md │ │ ├── install.md │ │ ├── links.csv │ │ ├── objective.md │ │ ├── output.md │ │ ├── paper.pdf │ │ ├── requirements.txt │ │ └── usage.md │ ├── mkdocs.yml │ ├── setup.py │ └── src │ │ ├── somef.egg-info │ │ ├── PKG-INFO │ │ ├── SOURCES.txt │ │ ├── dependency_links.txt │ │ ├── entry_points.txt │ │ ├── not-zip-safe │ │ ├── requires.txt │ │ └── top_level.txt │ │ └── somef │ │ ├── LICENSE │ │ ├── __init__.py │ │ ├── __main__.py │ │ ├── cli.py │ │ ├── configuration.py │ │ ├── createExcerpts.py │ │ ├── data_to_graph.py │ │ ├── evaluation │ │ ├── create_header_corpus.py │ │ ├── header_evaluation_interactive.py │ │ ├── output_header_evaluation_summary.py │ │ └── update_evaluation.py │ │ ├── header_analysis.py │ │ ├── models │ │ ├── citation.sk │ │ ├── description.sk │ │ ├── installation.sk │ │ └── invocation.sk │ │ ├── schema │ │ ├── __init__.py │ │ └── software_schema.py │ │ └── test │ │ ├── __init__.py │ │ ├── test_cli.py │ │ ├── test_data_to_graph.py │ │ ├── test_get_data.py │ │ ├── test_header_analysis.py │ │ ├── test_utils.py │ │ ├── utils_for_tests.py │ │ └── widoco_readme.md ├── test_basic │ ├── test_basic_body.py │ ├── test_basic_function.py │ ├── test_basic_function_return.py │ └── test_basic_method.py ├── test_data_flow.py ├── test_docstring_parser │ ├── __init__.py │ ├── google_docstring_test.py │ ├── numpy_docstring_test.py │ ├── sphinx_docstring_test.py │ └── sphinx_docstring_test_v2.py ├── test_dynamic │ ├── argument_call.py │ ├── test_dynamic.py │ ├── test_dynamic_class_import.py │ ├── test_dynamic_from_import.py │ ├── test_dynamic_from_import_alias.py │ ├── test_dynamic_from_import_start.py │ ├── test_dynamic_func.py │ ├── test_dynamic_func_from_import_start.py │ ├── test_dynamic_import.py │ ├── test_dynamic_import_alias.py │ ├── test_dynamic_method.py │ ├── test_dynamic_method_variable.py │ ├── test_dynamic_method_variable_body.py │ └── test_pycg_paper.py ├── test_inheritance │ ├── __init__.py │ ├── nested_call.py │ ├── super_nested_call.py │ ├── super_test.py │ ├── super_test_2.py │ ├── super_test_3.py │ ├── super_test_4.py │ ├── super_test_5.py │ ├── test_classes.py │ ├── test_functions.py │ ├── test_import.py │ ├── test_pycg_paper_2.py │ └── test_self_variable.py ├── test_license_extraction │ └── LICENSE ├── test_multiple_mains │ ├── __init__.py │ ├── bar.py │ ├── foo.py │ ├── lalo.py │ └── test.py ├── test_multiple_mains_indirect │ ├── __init__.py │ ├── bar.py │ ├── foo.py │ └── test.py ├── test_no_main │ ├── __init__.py │ └── foo.py ├── test_random.py └── test_readme │ ├── README.md │ └── subdir │ ├── README.txt │ └── subsubdir │ └── README.rst ├── test_inspect4py.py └── test_utils.py /.github/workflows/pypi-publish.yml: -------------------------------------------------------------------------------- 1 | # This workflows will upload a Python Package using Twine when a release is created 2 | # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries 3 | 4 | name: Publish Inspect4py package to PyPi 5 | 6 | on: 7 | release: 8 | types: [created] 9 | 10 | jobs: 11 | deploy: 12 | 13 | runs-on: ubuntu-latest 14 | 15 | steps: 16 | - uses: actions/checkout@v2 17 | - name: Set up Python 18 | uses: actions/setup-python@v2 19 | with: 20 | python-version: '3.9' 21 | - name: Install dependencies 22 | run: | 23 | python -m pip install --upgrade pip 24 | pip install setuptools wheel twine 25 | - name: Build and publish 26 | env: 27 | TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }} 28 | TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }} 29 | run: | 30 | python setup.py sdist bdist_wheel 31 | twine upload dist/* 32 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | build/* 2 | dist/* 3 | env/* 4 | .vscode/ 5 | .idea/ 6 | .ipynb_checkpoints/ 7 | config.json 8 | __pycache__/ 9 | .DS_Store 10 | Lib/* 11 | Scripts/* 12 | .idea/* 13 | *.json 14 | *.ttl 15 | OutputDir/ 16 | output_dir/ 17 | defoe/* 18 | env_* 19 | inspect4py.egg-info/* 20 | test/test_files/hellogitworld 21 | -------------------------------------------------------------------------------- /.readthedocs.yml: -------------------------------------------------------------------------------- 1 | # Required 2 | version: 2 3 | 4 | # Build documentation with MkDocs 5 | mkdocs: 6 | configuration: mkdocs.yml 7 | 8 | # Optionally build your docs in additional formats such as PDF and ePub 9 | formats: all 10 | 11 | # Optionally set the version of Python and requirements required to build your docs 12 | python: 13 | install: 14 | - requirements: docs/requirements.txt 15 | 16 | build: 17 | os: ubuntu-22.04 18 | tools: 19 | python: "3.7" 20 | -------------------------------------------------------------------------------- /CITATION.cff: -------------------------------------------------------------------------------- 1 | title: "Inspect4py: A Knowledge Extraction Framework for Python Code Repositories" 2 | license: BSD-3-Clause license 3 | authors: 4 | - family-names: Filgueira 5 | given-names: Rosa 6 | orcid: "0000-0002-5715-3046" 7 | - family-names: Garijo 8 | given-names: Daniel 9 | orcid: "http://orcid.org/0000-0003-0454-7145" 10 | cff-version: 1.2.0 11 | message: "If you use this software, please cite both the article from preferred-citation and the software itself." 12 | preferred-citation: 13 | authors: 14 | - family-names: Filgueira 15 | given-names: Rosa 16 | - family-names: Garijo 17 | given-names: Daniel 18 | title: "Inspect4py: A Knowledge Extraction Framework for Python Code Repositories" 19 | type: article 20 | year: 2022 21 | doi: 10.1145/3524842.3528497 22 | identifiers: 23 | - description: "Collection of archived snapshots for Inspect4py" 24 | type: doi 25 | value: 10.5281/zenodo.5907936 26 | -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- 1 | ## Contribution guidelines 2 | Contributions to address any of the current issues are welcome. In order to push your contribution, just **push your pull request to the development branch (dev)**. The master branch has only the code associated to the latest release. 3 | -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- 1 | FROM python:3.7 2 | 3 | RUN apt update &&\ 4 | apt install -y git &&\ 5 | apt install -y graphviz 6 | 7 | RUN pip install --upgrade pip 8 | 9 | RUN git clone https://github.com/SoftwareUnderstanding/inspect4py 10 | RUN cd inspect4py && pip install -e . 11 | -------------------------------------------------------------------------------- /Dockerfile_old: -------------------------------------------------------------------------------- 1 | FROM python:3.7 2 | 3 | 4 | RUN apt update &&\ 5 | apt install -y git &&\ 6 | apt install -y graphviz 7 | 8 | RUN pip install --upgrade pip 9 | RUN pip install graphviz 10 | RUN pip install cdmcfparser==2.3.2 11 | RUN pip install docstring_parser==0.7 12 | RUN pip install astor 13 | RUN pip install click 14 | 15 | RUN useradd -ms /bin/bash code_user 16 | 17 | ENV USER code_user 18 | ENV HOME /home/code_user 19 | 20 | WORKDIR ${HOME} 21 | 22 | COPY ./inspect4py.py ${HOME}/. 23 | COPY ./code_visualization.py ${HOME}/. 24 | RUN mkdir ${HOME}/staticfg 25 | ADD ./staticfg ${HOME}/staticfg/. 26 | -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | include inspect4py/licenses/* 2 | -------------------------------------------------------------------------------- /docs/images/code_inspector_json_viewer.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/docs/images/code_inspector_json_viewer.png -------------------------------------------------------------------------------- /docs/images/data_flow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/docs/images/data_flow.png -------------------------------------------------------------------------------- /docs/images/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/docs/images/logo.png -------------------------------------------------------------------------------- /docs/images/logo_old.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/docs/images/logo_old.png -------------------------------------------------------------------------------- /docs/images/visual_code.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/docs/images/visual_code.png -------------------------------------------------------------------------------- /docs/images/visual_code_inspector.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/docs/images/visual_code_inspector.png -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- 1 | mkdocs-material -------------------------------------------------------------------------------- /inspect4py/__init__.py: -------------------------------------------------------------------------------- 1 | __version__ = '0.0.8' 2 | -------------------------------------------------------------------------------- /inspect4py/build.py: -------------------------------------------------------------------------------- 1 | from tree_sitter import Language 2 | 3 | Language.build_library( 4 | # Store the library in the `build` directory 5 | 'my-languages.so', 6 | 7 | # Include one or more languages 8 | [ 9 | 'tree-sitter-python' 10 | ] 11 | ) 12 | -------------------------------------------------------------------------------- /inspect4py/evaluation/readme.md: -------------------------------------------------------------------------------- 1 | ## Evaluation 2 | 3 | Simply cd into the right directory and run it. You can do so with the following commands 4 | 5 | ``` 6 | cd src/main_command_evaluation 7 | python3 run_directory_type_evaluation.py 8 | ``` 9 | 10 | Note: this will take some time to execute, as it needs to download > 90 GitHub repositories. 11 | -------------------------------------------------------------------------------- /inspect4py/licenses/wtfpl.txt: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Do What The F*ck You Want To Public License" 3 | spdx-id: WTFPL 4 | 5 | description: The easiest license out there. It gives the user permissions to do whatever they want with your code. 6 | 7 | how: Create a text file (typically named LICENSE or LICENSE.txt) in the root of your source code and copy the text of the license into the file. 8 | 9 | using: 10 | 11 | permissions: 12 | - commercial-use 13 | - modifications 14 | - distribution 15 | - private-use 16 | 17 | conditions: [] 18 | 19 | limitations: [] 20 | 21 | --- 22 | 23 | DO WHAT THE FUCK YOU WANT TO PUBLIC LICENSE 24 | Version 2, December 2004 25 | 26 | Copyright (C) 2004 Sam Hocevar 27 | 28 | Everyone is permitted to copy and distribute verbatim or modified 29 | copies of this license document, and changing it is allowed as long 30 | as the name is changed. 31 | 32 | DO WHAT THE FUCK YOU WANT TO PUBLIC LICENSE 33 | TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 34 | 35 | 0. You just DO WHAT THE FUCK YOU WANT TO. 36 | -------------------------------------------------------------------------------- /inspect4py/resources/python_mac.so: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/inspect4py/resources/python_mac.so -------------------------------------------------------------------------------- /inspect4py/resources/python_unix.so: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/inspect4py/resources/python_unix.so -------------------------------------------------------------------------------- /inspect4py/resources/python_win.so: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/inspect4py/resources/python_win.so -------------------------------------------------------------------------------- /inspect4py/staticfg/__init__.py: -------------------------------------------------------------------------------- 1 | from .builder import CFGBuilder 2 | from .model import Block, Link, CFG 3 | -------------------------------------------------------------------------------- /inspect4py_pycg/README.md: -------------------------------------------------------------------------------- 1 | ## Pycg format converter 2 | 3 | `pycg_convert.py` converts the call list generated by inspect4py to be in the format used by pycg. 4 | 5 | Usage: 6 | ``` 7 | python3 pycg_convert.py 8 | ``` 9 | 10 | where `` is the path to a repository directory or the path to 11 | a script. 12 | 13 | This will create an directory `output_dir` including `pycg_call_graph.json` that have the pycg format call list, along with other temporary json files. -------------------------------------------------------------------------------- /mkdocs.yml: -------------------------------------------------------------------------------- 1 | site_name: inspect4py 2 | nav: 3 | - Home: index.md 4 | - Install: install.md 5 | - Usage: usage.md 6 | - Output: output.md 7 | theme: 8 | name: material 9 | 10 | markdown_extensions: 11 | - admonition 12 | - codehilite: 13 | guess_lang: false 14 | - toc: 15 | permalink: true 16 | -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- 1 | [build-system] 2 | requires = [ 3 | "bs4==0.0.1", 4 | "docstring_parser==0.7", 5 | "astor", 6 | "graphviz", 7 | "click", 8 | "pigar", 9 | "setuptools==54.2.0", 10 | "json2html", 11 | "configparser", 12 | "tree-sitter", 13 | "requests" 14 | ] 15 | build-backend = "setuptools.build_meta" 16 | -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | docstring_parser==0.7 2 | astor 3 | graphviz 4 | click 5 | pigar 6 | setuptools==54.2.0 7 | json2html 8 | configparser 9 | bigcode_astgen 10 | GitPython 11 | tree-sitter 12 | requests 13 | -------------------------------------------------------------------------------- /requirements_eval.txt: -------------------------------------------------------------------------------- 1 | docstring_parser==0.7 2 | astor 3 | graphviz 4 | click 5 | pigar 6 | setuptools==54.2.0 7 | json2html 8 | configparser 9 | bigcode_astgen 10 | GitPython 11 | tree-sitter 12 | requests 13 | pytest 14 | -------------------------------------------------------------------------------- /test/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/__init__.py -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/.gitignore: -------------------------------------------------------------------------------- 1 | /.idea 2 | /pix2pix/checkpoints 3 | /midas/model-f46da743.pt 4 | /midas/model.pt 5 | /structuredrl/model.pth.tar 6 | dataset_prepare/midas/model.pt 7 | /results 8 | /result 9 | /__pycache__ 10 | */*.pyc 11 | */**/*.pyc 12 | */**/**/*.pyc 13 | */**/**/**/*.pyc 14 | */**/**/**/**/*.pyc 15 | */*.so* 16 | */**/*.so* 17 | */**/*.dylib* 18 | */**/__pycache__ -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/LICENSE: -------------------------------------------------------------------------------- 1 | Copyright 2021, Seyed Mahdi Hosseini Miangoleh, Sebastian Dille, Computational Photography Laboratory. All rights reserved. 2 | 3 | This software is for academic use only. A redistribution of this 4 | software, with or without modifications, has to be for academic 5 | use only, while giving the appropriate credit to the original 6 | authors of the software. The methods implemented as a part of 7 | this software may be covered under patents or patent applications. 8 | 9 | THIS SOFTWARE IS PROVIDED BY THE AUTHOR ''AS IS'' AND ANY EXPRESS OR IMPLIED 10 | WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND 11 | FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR 12 | CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 13 | CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR 14 | SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON 15 | ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 16 | NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF 17 | ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/dataset_prepare/create_crops.m: -------------------------------------------------------------------------------- 1 | clc 2 | clear 3 | %% 4 | 5 | generatecrops('middleburry',1800/2,100,'train',0) 6 | generatecrops('middleburry',1800/2,100,'test',0) 7 | 8 | generatecrops('middleburry',1400/2,150,'train',100) 9 | generatecrops('middleburry',1400/2,150,'test',100) 10 | 11 | generatecrops('middleburry',1000/2,250,'train',200) 12 | generatecrops('middleburry',1000/2,250,'test',200) 13 | 14 | 15 | generatecrops('ibims1',480/2,70,'train',0) 16 | generatecrops('ibims1',360/2,80,'train',100) 17 | generatecrops('ibims1',280/2,50,'train',200) 18 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/dataset_prepare/ibims1_prepare.m: -------------------------------------------------------------------------------- 1 | clc 2 | clear 3 | %% 4 | 5 | load('ibims1_selected.mat'); 6 | 7 | root_dir = ''; 8 | 9 | ibims1_all_files = dir(sprintf('%s/ibims1/rgb/*.png',root_dir)); 10 | 11 | for i=1:numel(ibims1_all_files) 12 | current_name = ibims1_all_files(i).name; 13 | if ismember(current_name,files) 14 | fprintf('%d - %s \n',i,current_name) 15 | else 16 | delete(fullfile(ibims1_all_files(i).folder,ibims1_all_files(i).name)) 17 | end 18 | end -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/dataset_prepare/ibims1_selected.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/BoostingMonocularDepth/dataset_prepare/ibims1_selected.mat -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/dataset_prepare/midas/models/base_model.py: -------------------------------------------------------------------------------- 1 | import torch 2 | import torch.nn as nn 3 | 4 | 5 | class BaseModel(torch.nn.Module): 6 | def load(self, path): 7 | """Load model from file. 8 | 9 | Args: 10 | path (str): file path 11 | """ 12 | parameters = torch.load(path) 13 | 14 | if "optimizer" in parameters: 15 | parameters = parameters["model"] 16 | 17 | self.load_state_dict(parameters) 18 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/evaluation/extractD3Rpoints.m: -------------------------------------------------------------------------------- 1 | function [centers,neightbouring_rel,random_rel]=extractD3Rpoints(gt,samples) 2 | % Inputs 3 | % gt: ground truth image to exctact the superpixels from 4 | % samples: expected number of samples (actual number of samples might be slightly different) 5 | 6 | % Outputs: 7 | % centers: superpixel centers to be used within D3R function 8 | % neightbouring_rel: neighbouring point pair relations to be used within D3R function 9 | % random_rel: randomly selected point pair relations to be used within D3R function 10 | 11 | gt(isnan(gt))=0; 12 | [L,NumLabels]=superpixels(gt,samples,'Compactness',20); 13 | 14 | idx = label2idx(L); 15 | [height, width, ~] = size(gt); 16 | neightbouring_rel = cell(NumLabels,1); 17 | random_rel = cell(NumLabels,1); 18 | centers = zeros(NumLabels,1); 19 | for i = 1:NumLabels 20 | mask = L == i; 21 | neightbouring_rel{i} = unique(L(bwdist(mask ,'euclidean')==1)); 22 | random_rel{i} = randi([1,NumLabels],3,1); 23 | a = idx{i}; 24 | center = computeCenter(a,height); 25 | centers(i) = center; 26 | end 27 | 28 | end 29 | 30 | function center = computeCenter(cluster,imgheight) 31 | sumx=0; 32 | sumy=0; 33 | for i=1:length(cluster) 34 | [x,y] = index2index(cluster(i),imgheight); 35 | sumx = sumx + x; 36 | sumy = sumy + y; 37 | end 38 | center = floor(sumx/length(cluster)) + (floor(sumy/length(cluster))-1)*imgheight; 39 | end -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/evaluation/index2index.m: -------------------------------------------------------------------------------- 1 | function [x,y] = index2index(index,rows) 2 | x=mod(index,rows); 3 | y=floor(index/rows)+1; 4 | if x == 0 5 | x = rows; 6 | y = y-1; 7 | end 8 | end -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/evaluation/ord.m: -------------------------------------------------------------------------------- 1 | function out = ord(val1,val2,delta) 2 | ratio = (val1+eps)/(val2+eps); 3 | if ratio > delta 4 | out = 1; 5 | elseif ratio < 1/delta 6 | out = -1; 7 | else 8 | out = 0; 9 | end 10 | end -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/lib/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/lib/multi_depth_model_woauxi.py: -------------------------------------------------------------------------------- 1 | from lib import network_auxi as network 2 | from lib.net_tools import get_func 3 | import torch 4 | import torch.nn as nn 5 | 6 | class RelDepthModel(nn.Module): 7 | def __init__(self, backbone='resnet50'): 8 | super(RelDepthModel, self).__init__() 9 | if backbone == 'resnet50': 10 | encoder = 'resnet50_stride32' 11 | elif backbone == 'resnext101': 12 | encoder = 'resnext101_stride32x8d' 13 | self.depth_model = DepthModel(encoder) 14 | 15 | def inference(self, rgb): 16 | with torch.no_grad(): 17 | input = rgb.cuda() 18 | depth = self.depth_model(input) 19 | #pred_depth_out = depth - depth.min() + 0.01 20 | return depth #pred_depth_out 21 | 22 | 23 | class DepthModel(nn.Module): 24 | def __init__(self, encoder): 25 | super(DepthModel, self).__init__() 26 | backbone = network.__name__.split('.')[-1] + '.' + encoder 27 | self.encoder_modules = get_func(backbone)() 28 | self.decoder_modules = network.Decoder() 29 | 30 | def forward(self, x): 31 | lateral_out = self.encoder_modules(x) 32 | out_logit = self.decoder_modules(lateral_out) 33 | return out_logit -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/midas/models/base_model.py: -------------------------------------------------------------------------------- 1 | import torch 2 | import torch.nn as nn 3 | 4 | 5 | class BaseModel(torch.nn.Module): 6 | def load(self, path): 7 | """Load model from file. 8 | 9 | Args: 10 | path (str): file path 11 | """ 12 | parameters = torch.load(path) 13 | 14 | if "optimizer" in parameters: 15 | parameters = parameters["model"] 16 | 17 | self.load_state_dict(parameters) 18 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/pix2pix/options/__init__.py: -------------------------------------------------------------------------------- 1 | """This package options includes option modules: training options, test options, and basic options (used in both training and test).""" 2 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/pix2pix/options/test_options.py: -------------------------------------------------------------------------------- 1 | from .base_options import BaseOptions 2 | 3 | 4 | class TestOptions(BaseOptions): 5 | """This class includes test options. 6 | 7 | It also includes shared options defined in BaseOptions. 8 | """ 9 | 10 | def initialize(self, parser): 11 | parser = BaseOptions.initialize(self, parser) # define shared options 12 | parser.add_argument('--aspect_ratio', type=float, default=1.0, help='aspect ratio of result images') 13 | parser.add_argument('--phase', type=str, default='test', help='train, val, test, etc') 14 | # Dropout and Batchnorm has different behavioir during training and test. 15 | parser.add_argument('--eval', action='store_true', help='use eval mode during test time.') 16 | parser.add_argument('--num_test', type=int, default=50, help='how many test images to run') 17 | # rewrite devalue values 18 | parser.set_defaults(model='pix2pix4depth') 19 | # To avoid cropping, the load_size should be the same as crop_size 20 | parser.set_defaults(load_size=parser.get_default('crop_size')) 21 | self.isTrain = False 22 | return parser 23 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/pix2pix/util/__init__.py: -------------------------------------------------------------------------------- 1 | """This package includes a miscellaneous collection of useful helper functions.""" 2 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/requirements.txt: -------------------------------------------------------------------------------- 1 | torch==1.2 2 | torchvision 3 | cudnnenv 4 | gradio 5 | matplotlib 6 | opencv-python 7 | scikit-image 8 | scipy 9 | gdown 10 | 11 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/LICENSE: -------------------------------------------------------------------------------- 1 | MIT License 2 | 3 | Copyright (c) 2018 Tamaki Kojima 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. 22 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/make_ext.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env bash 2 | 3 | PYTHON_CMD=${PYTHON_CMD:=python} 4 | CUDA_PATH=/usr/local/cuda-8.0 5 | CUDA_INCLUDE_DIR=/usr/local/cuda-8.0/include 6 | GENCODE="-gencode arch=compute_61,code=sm_61 \ 7 | -gencode arch=compute_52,code=sm_52 \ 8 | -gencode arch=compute_52,code=compute_52" 9 | NVCCOPT="-std=c++11 -x cu --expt-extended-lambda -O3 -Xcompiler -fPIC" 10 | 11 | ROOTDIR=$PWD 12 | echo "========= Build BatchNorm2dSync =========" 13 | if [ -z "$1" ]; then TORCH=$($PYTHON_CMD -c "import os; import torch; print(os.path.dirname(torch.__file__))"); else TORCH="$1"; fi 14 | cd modules/functional/_syncbn/src 15 | $CUDA_PATH/bin/nvcc -c -o syncbn.cu.o syncbn.cu $NVCCOPT $GENCODE -I $CUDA_INCLUDE_DIR 16 | cd ../ 17 | $PYTHON_CMD build.py 18 | cd $ROOTDIR 19 | 20 | # END 21 | echo "========= Build Complete =========" 22 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/__init__.py -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/__init__.py: -------------------------------------------------------------------------------- 1 | from .syncbn import batchnorm2d_sync 2 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/__init__.py -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/_ext/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/_ext/__init__.py -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/_ext/syncbn/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | from torch.utils.ffi import _wrap_function 3 | from ._syncbn import lib as _lib, ffi as _ffi 4 | 5 | __all__ = [] 6 | def _import_symbols(locals): 7 | for symbol in dir(_lib): 8 | fn = getattr(_lib, symbol) 9 | if callable(fn): 10 | locals[symbol] = _wrap_function(fn, _ffi) 11 | else: 12 | locals[symbol] = fn 13 | __all__.append(symbol) 14 | 15 | _import_symbols(locals()) 16 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/build.py: -------------------------------------------------------------------------------- 1 | import os 2 | from torch.utils.ffi import create_extension 3 | 4 | sources = ['src/syncbn.cpp'] 5 | headers = ['src/syncbn.h'] 6 | extra_objects = ['src/syncbn.cu.o'] 7 | with_cuda = True 8 | 9 | this_file = os.path.dirname(os.path.realpath(__file__)) 10 | extra_objects = [os.path.join(this_file, fname) for fname in extra_objects] 11 | 12 | ffi = create_extension( 13 | '_ext.syncbn', 14 | headers=headers, 15 | sources=sources, 16 | relative_to=__file__, 17 | with_cuda=with_cuda, 18 | extra_objects=extra_objects, 19 | extra_compile_args=["-std=c++11"] 20 | ) 21 | 22 | if __name__ == '__main__': 23 | ffi.build() 24 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/src/common.h: -------------------------------------------------------------------------------- 1 | #ifndef __COMMON__ 2 | #define __COMMON__ 3 | #include 4 | 5 | /* 6 | * General settings 7 | */ 8 | const int WARP_SIZE = 32; 9 | const int MAX_BLOCK_SIZE = 512; 10 | 11 | /* 12 | * Utility functions 13 | */ 14 | template 15 | __device__ __forceinline__ T WARP_SHFL_XOR( 16 | T value, int laneMask, int width = warpSize, unsigned int mask = 0xffffffff) { 17 | #if CUDART_VERSION >= 9000 18 | return __shfl_xor_sync(mask, value, laneMask, width); 19 | #else 20 | return __shfl_xor(value, laneMask, width); 21 | #endif 22 | } 23 | 24 | __device__ __forceinline__ int getMSB(int val) { return 31 - __clz(val); } 25 | 26 | static int getNumThreads(int nElem) { 27 | int threadSizes[5] = {32, 64, 128, 256, MAX_BLOCK_SIZE}; 28 | for (int i = 0; i != 5; ++i) { 29 | if (nElem <= threadSizes[i]) { 30 | return threadSizes[i]; 31 | } 32 | } 33 | return MAX_BLOCK_SIZE; 34 | } 35 | 36 | 37 | #endif -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/src/syncbn.cu.h: -------------------------------------------------------------------------------- 1 | #ifndef __SYNCBN__ 2 | #define __SYNCBN__ 3 | 4 | /* 5 | * Exported functions 6 | */ 7 | extern "C" int _syncbn_sum_sqsum_cuda(int N, int C, int S, const float *x, 8 | float *sum, float *sqsum, 9 | cudaStream_t stream); 10 | extern "C" int _syncbn_forward_cuda( 11 | int N, int C, int S, float *z, const float *x, 12 | const float *gamma, const float *beta, const float *mean, const float *var, 13 | float eps, cudaStream_t stream); 14 | extern "C" int _syncbn_backward_xhat_cuda( 15 | int N, int C, int S, const float *dz, const float *x, 16 | const float *mean, const float *var, float *sum_dz, float *sum_dz_xhat, 17 | float eps, cudaStream_t stream); 18 | extern "C" int _syncbn_backward_cuda( 19 | int N, int C, int S, const float *dz, const float *x, 20 | const float *gamma, const float *beta, const float *mean, const float *var, 21 | const float *sum_dz, const float *sum_dz_xhat, 22 | float *dx, float *dweight, float *dbias, 23 | float eps, cudaStream_t stream); 24 | 25 | 26 | #endif 27 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/src/syncbn.cu.o: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/src/syncbn.cu.o -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/functional/_syncbn/src/syncbn.h: -------------------------------------------------------------------------------- 1 | int syncbn_sum_sqsum_cuda( 2 | const THCudaTensor *x, THCudaTensor *sum, THCudaTensor *sqsum); 3 | int syncbn_forward_cuda( 4 | THCudaTensor *z, const THCudaTensor *x, 5 | const THCudaTensor *gamma, const THCudaTensor *beta, 6 | const THCudaTensor *mean, const THCudaTensor *var, float eps); 7 | int syncbn_backward_xhat_cuda( 8 | const THCudaTensor *dz, const THCudaTensor *x, 9 | const THCudaTensor *mean, const THCudaTensor *var, 10 | THCudaTensor *sum_dz, THCudaTensor *sum_dz_xhat, 11 | float eps); 12 | int syncbn_backard_cuda( 13 | const THCudaTensor *dz, const THCudaTensor *x, 14 | const THCudaTensor *gamma, const THCudaTensor *beta, 15 | const THCudaTensor *mean, const THCudaTensor *var, 16 | const THCudaTensor *sum_dz, const THCudaTensor *sum_dz_xhat, 17 | THCudaTensor *dx, THCudaTensor *dgamma, THCudaTensor *dbeta, float eps); 18 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/modules/nn/__init__.py: -------------------------------------------------------------------------------- 1 | from .syncbn import * 2 | -------------------------------------------------------------------------------- /test/test_files/BoostingMonocularDepth/structuredrl/models/syncbn/requirements.txt: -------------------------------------------------------------------------------- 1 | future 2 | cffi 3 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/config.py: -------------------------------------------------------------------------------- 1 | import os 2 | 3 | class Config: 4 | SECRET_KEY = os.environ.get("SECRET_KEY") or "hard to guess string" 5 | TEMPORAL_FOLDER = os.environ.get("TEMPORAL_FOLER") or "tmp" 6 | TEMPLATES_AUTORELOAD = True 7 | 8 | class DevelopmentConfig(Config): 9 | DEBUG = True 10 | 11 | class ProductionConfig(Config): 12 | DEBUG = False 13 | 14 | config = { 15 | "development": DevelopmentConfig, 16 | "production": ProductionConfig, 17 | "default": DevelopmentConfig 18 | } -------------------------------------------------------------------------------- /test/test_files/Chowlk/converter.py: -------------------------------------------------------------------------------- 1 | import argparse 2 | 3 | from source.chowlk.transformations import transform_ontology 4 | from source.chowlk.utils import read_drawio_xml 5 | 6 | 7 | def main(diagram_path, output_path, type, format): 8 | 9 | root = read_drawio_xml(diagram_path) 10 | ontology_turtle, ontology_xml, namespaces, errors = transform_ontology(root) 11 | 12 | file = open(output_path, mode="w") 13 | 14 | if format == "ttl": 15 | file.write(ontology_turtle) 16 | elif format == "xml": 17 | file.write(ontology_xml) 18 | 19 | file.close() 20 | 21 | 22 | 23 | if __name__ == "__main__": 24 | 25 | parser = argparse.ArgumentParser(description="Convert an xml conceptualization into an ontology.") 26 | parser.add_argument("diagram_path", type=str, help="the path where the diagram is located") 27 | parser.add_argument("output_path", type=str, help="the desired location for the generated ontology") 28 | parser.add_argument("--type", type=str, default="ontology", help="ontology or rdf data") 29 | parser.add_argument("--format", type=str, default="ttl", help="file format: ttl or xml") 30 | args = parser.parse_args() 31 | 32 | main(args.diagram_path, args.output_path, args.type, args.format) 33 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/pyproject.toml: -------------------------------------------------------------------------------- 1 | [build-system] 2 | requires = [ 3 | "setuptools>=42", 4 | "wheel" 5 | ] 6 | 7 | build-backend = "setuptools.build_meta" -------------------------------------------------------------------------------- /test/test_files/Chowlk/source/chowlk/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/Chowlk/source/chowlk/__init__.py -------------------------------------------------------------------------------- /test/test_files/Chowlk/source/chowlk/geometry.py: -------------------------------------------------------------------------------- 1 | 2 | 3 | def get_corners(x, y, width, height): 4 | 5 | p1 = (x, y) 6 | p2 = (x, y+height) 7 | p3 = (x+width, y) 8 | p4 = (x+width, y+height) 9 | 10 | return p1, p2, p3, p4 11 | 12 | 13 | def get_corners_rect_child(child_element): 14 | 15 | geometry = child_element[0] 16 | x = float(geometry.attrib["x"]) if "x" in geometry.attrib else 0 17 | y = float(geometry.attrib["y"]) if "y" in geometry.attrib else 0 18 | width, height = float(geometry.attrib["width"]), float(geometry.attrib["height"]) 19 | p1, p2, p3, p4 = get_corners(x, y, width, height) 20 | 21 | return p1, p2, p3, p4 22 | 23 | 24 | def proximity_to_shape(point, xml_shape, thr): 25 | 26 | p1, _, _, p4 = get_corners_rect_child(xml_shape) 27 | 28 | if abs(p1[0] - point[0]) <= thr and p1[1] <= point[1] <= p4[1]: 29 | near = True 30 | elif abs(p1[1] - point[1]) <= thr and p1[0] <= point[0] <= p4[0]: 31 | near = True 32 | elif abs(p4[0] - point[0]) <= thr and p1[1] <= point[1] <= p4[1]: 33 | near = True 34 | elif abs(p4[1] - point[1]) <= thr and p1[0] <= point[0] <= p4[0]: 35 | near = True 36 | else: 37 | near = False 38 | 39 | return near -------------------------------------------------------------------------------- /test/test_files/Chowlk/static/js/sketch.js: -------------------------------------------------------------------------------- 1 | var pFilename = document.getElementById("filename"); 2 | var inputFile = document.getElementById("file"); 3 | var resetButtton = document.getElementById("reset"); 4 | var 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-------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/inputs/test_relations_9.xml: -------------------------------------------------------------------------------- 1 | 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-------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/inputs/test_subclass_1.xml: -------------------------------------------------------------------------------- 1 | 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-------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/inputs/test_subclass_2.xml: -------------------------------------------------------------------------------- 1 | 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-------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_1.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | 9 | datatype property 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | Class 21 | 22 | 23 | 24 | 25 | 26 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_10.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | datatype property2 9 | 10 | 11 | 12 | 13 | datatype property1 14 | 15 | 16 | Class 17 | 18 | 19 | 20 | 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_11.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | 9 | 10 | datatype property2 11 | 12 | 13 | datatype property1 14 | 15 | 16 | 17 | 18 | 19 | 20 | Class 21 | 22 | 23 | 24 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_12.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | datatype property 8 | 9 | 10 | 11 | 12 | 13 | Class 14 | 15 | 16 | 17 | 18 | 19 | 20 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_13.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | datatype property 9 | 10 | 11 | 12 | 13 | 14 | 15 | Class 16 | 17 | 18 | 19 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_2.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | 9 | 10 | Class 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | datatype property 22 | 23 | 24 | 25 | 26 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_3.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | 9 | 10 | Class 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | datatype property 23 | 24 | 25 | 26 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_4.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | datatype property 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | Class 24 | 25 | 26 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_6.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | Class 8 | 9 | 10 | 11 | 12 | datatype property 13 | 14 | 15 | 16 | 17 | 18 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_7.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | 9 | 10 | 11 | datatype property 12 | 13 | 14 | 15 | 16 | 17 | Class 18 | 19 | 20 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_8.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | 9 | datatype property 10 | 11 | 12 | Class 13 | 14 | 15 | 16 | 17 | 18 | 19 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_attributes_9.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | 9 | datatype property 10 | 11 | 12 | Class 13 | 14 | 15 | 16 | 17 | 18 | 19 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_disjoint_1.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | Class1 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | Class2 18 | 19 | 20 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_disjoint_2.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | 9 | 10 | Class2 11 | 12 | 13 | 14 | Class1 15 | 16 | 17 | 18 | 19 | 20 | 21 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_equivalence_1.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | Class1 9 | 10 | 11 | 12 | 13 | 14 | Class2 15 | 16 | 17 | 18 | 19 | 20 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_equivalence_2.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | Class2 9 | 10 | 11 | 12 | 13 | 14 | Class1 15 | 16 | 17 | 18 | 19 | 20 | 21 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_individuals_1.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | Class1 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_individuals_2.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | Class1 13 | 14 | 15 | 16 | 17 | 18 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_10.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | Class1 9 | 10 | 11 | 12 | Class2 13 | 14 | 15 | object property 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_11.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | Class1 8 | 9 | 10 | 11 | Class2 12 | 13 | 14 | 15 | 16 | 17 | 18 | object property 19 | 20 | 21 | 22 | 23 | 24 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_12.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | Class2 8 | 9 | 10 | 11 | 12 | 13 | object property 14 | 15 | 16 | 17 | 18 | 19 | Class1 20 | 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_13.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | Class2 8 | 9 | 10 | 11 | 12 | 13 | object property 14 | 15 | 16 | 17 | 18 | 19 | Class1 20 | 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_14.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | Class1 9 | 10 | 11 | object property2 12 | 13 | 14 | 15 | 16 | 17 | Class2 18 | 19 | 20 | 21 | object property1 22 | 23 | 24 | 25 | 26 | 27 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_15.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | 9 | object property2 10 | 11 | 12 | 13 | 14 | Class1 15 | 16 | 17 | 18 | 19 | 20 | 21 | object property1 22 | 23 | 24 | Class2 25 | 26 | 27 | 28 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_16.owl: -------------------------------------------------------------------------------- 1 | 2 | 7 | 8 | 9 | 10 | 11 | Class1 12 | 13 | 14 | 15 | 16 | object property2 17 | 18 | 19 | 20 | Class2 21 | 22 | 23 | 24 | 25 | object property1 26 | 27 | 28 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_17.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | Class1 9 | 10 | 11 | object property 12 | 13 | 14 | 15 | 16 | Class2 17 | 18 | 19 | 20 | 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_18.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | Class2 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | object property 17 | 18 | 19 | 20 | Class1 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_19.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | Class2 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | object property 17 | 18 | 19 | 20 | Class1 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_20.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | Class2 9 | 10 | 11 | object property 12 | 13 | 14 | 15 | 16 | 17 | Class1 18 | 19 | 20 | 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_21.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | 9 | object property 10 | 11 | 12 | 13 | Class1 14 | 15 | 16 | 17 | Class2 18 | 19 | 20 | 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_22.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | object property 9 | 10 | 11 | 12 | 13 | Class2 14 | 15 | 16 | 17 | Class1 18 | 19 | 20 | 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_23.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | 9 | object property 10 | 11 | 12 | Class2 13 | 14 | 15 | 16 | 17 | 18 | 19 | Class1 20 | 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_24.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | Class1 9 | 10 | 11 | 12 | 13 | object property 14 | 15 | 16 | Class2 17 | 18 | 19 | 20 | 21 | 22 | 23 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_8.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | 9 | 10 | Class1 11 | 12 | 13 | 14 | object property 15 | 16 | 17 | 18 | Class2 19 | 20 | 21 | 22 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_relations_9.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | Class1 8 | 9 | 10 | 11 | 12 | Class2 13 | 14 | 15 | 16 | object property 17 | 18 | 19 | 20 | 21 | 22 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_subclass_1.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | Class1 8 | 9 | 10 | 11 | 12 | 13 | Class2 14 | 15 | 16 | 17 | 18 | 19 | -------------------------------------------------------------------------------- /test/test_files/Chowlk/tests/outputs/test_subclass_2.owl: -------------------------------------------------------------------------------- 1 | 2 | 6 | 7 | 8 | Class1 9 | 10 | 11 | 12 | 13 | 14 | 15 | Class2 16 | 17 | 18 | 19 | -------------------------------------------------------------------------------- /test/test_files/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/__init__.py -------------------------------------------------------------------------------- /test/test_files/demo/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/demo/__init__.py -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/Makefile: -------------------------------------------------------------------------------- 1 | .PHONY: test 2 | 3 | WORDS = "./inputs/words.txt" 4 | 5 | test: words 6 | pytest -xv test.py unit.py 7 | 8 | words: 9 | [[ -f $(WORDS) ]] || (cd ./inputs && unzip words.txt.zip) 10 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/demo/demo_20_password/__init__.py -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/all_test.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env bash 2 | 3 | set -eu -o pipefail 4 | 5 | PRG="password_pgr.py" 6 | for FILE in password*.py; do 7 | echo "==> ${FILE} <==" 8 | cp "$FILE" "$PRG" 9 | make test 10 | done 11 | 12 | echo "Done." 13 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/const/adjs.txt: -------------------------------------------------------------------------------- 1 | absent 2 | actual 3 | adjourn 4 | annotated 5 | appellate 6 | appropriate 7 | certain 8 | civil 9 | clear 10 | common 11 | compulsory 12 | criminal 13 | cruel 14 | current 15 | different 16 | direct 17 | disorderly 18 | distinct 19 | domestic 20 | due 21 | eligible 22 | equal 23 | excessive 24 | exclusive 25 | executive 26 | extraordinary 27 | first 28 | foreign 29 | fourth 30 | free 31 | general 32 | good 33 | great 34 | high 35 | imminent 36 | impartial 37 | indian 38 | infamous 39 | inferior 40 | inhabitant 41 | inoperative 42 | judicial 43 | just 44 | large 45 | least 46 | legislative 47 | liable 48 | limited 49 | long 50 | male 51 | more 52 | natural 53 | naval 54 | necessary 55 | needful 56 | net 57 | new 58 | next 59 | numerous 60 | open 61 | original 62 | other 63 | own 64 | particular 65 | perfect 66 | present 67 | principal 68 | private 69 | pro 70 | probable 71 | proper 72 | public 73 | regular 74 | religious 75 | republican 76 | respective 77 | same 78 | second 79 | secure 80 | several 81 | sixth 82 | small 83 | sole 84 | speedy 85 | square 86 | subject 87 | subsequent 88 | such 89 | sufficient 90 | supreme 91 | temporary 92 | third 93 | unable 94 | uncorrected 95 | uniform 96 | unreasonable 97 | unusual 98 | useful 99 | valid 100 | whole 101 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/const/nouns.txt: -------------------------------------------------------------------------------- 1 | account 2 | affirmation 3 | age 4 | aid 5 | amendment 6 | appointment 7 | article 8 | attendance 9 | ballot 10 | case 11 | choice 12 | citizen 13 | claim 14 | compensation 15 | continuance 16 | crime 17 | date 18 | day 19 | death 20 | debt 21 | declaration 22 | defence 23 | disability 24 | dollar 25 | duty 26 | effect 27 | elect 28 | election 29 | elector 30 | enumeration 31 | execution 32 | executive 33 | fifth 34 | fourth 35 | herein 36 | importation 37 | insurrection 38 | jurisdiction 39 | jury 40 | land 41 | law 42 | legislation 43 | legislature 44 | life 45 | list 46 | majority 47 | manner 48 | meeting 49 | member 50 | money 51 | noon 52 | number 53 | objection 54 | offense 55 | office 56 | officer 57 | ordain 58 | order 59 | part 60 | people 61 | person 62 | power 63 | presence 64 | present 65 | privilege 66 | process 67 | property 68 | punishment 69 | purpose 70 | question 71 | quorum 72 | rebellion 73 | regulation 74 | representation 75 | representative 76 | requisite 77 | resignation 78 | right 79 | rule 80 | section 81 | senator 82 | service 83 | state 84 | subject 85 | submission 86 | tax 87 | tempore 88 | term 89 | thing 90 | third 91 | time 92 | trial 93 | vacancy 94 | version 95 | vote 96 | whereof 97 | witness 98 | writ 99 | writing 100 | year 101 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/const/verbs.txt: -------------------------------------------------------------------------------- 1 | abridge 2 | accord 3 | act 4 | adjourn 5 | admit 6 | affect 7 | appoint 8 | apportion 9 | approve 10 | ascertain 11 | assemble 12 | attain 13 | authorize 14 | be 15 | bear 16 | become 17 | bind 18 | call 19 | choose 20 | commit 21 | compel 22 | compose 23 | consist 24 | constitute 25 | construe 26 | convict 27 | count 28 | declare 29 | deny 30 | determine 31 | devolve 32 | direct 33 | discharge 34 | divide 35 | do 36 | elect 37 | enforce 38 | enjoy 39 | enter 40 | entitle 41 | establish 42 | exceed 43 | except 44 | exclude 45 | execute 46 | exercise 47 | exist 48 | extend 49 | fill 50 | fix 51 | follow 52 | form 53 | give 54 | grant 55 | happen 56 | have 57 | hold 58 | include 59 | increase 60 | issue 61 | keep 62 | lay 63 | lie 64 | make 65 | may 66 | meet 67 | pass 68 | pay 69 | prescribe 70 | present 71 | prohibit 72 | promote 73 | propose 74 | provide 75 | publish 76 | punish 77 | qualify 78 | question 79 | ratify 80 | receive 81 | regulate 82 | remove 83 | repeal 84 | require 85 | return 86 | say 87 | secure 88 | shall 89 | sign 90 | sit 91 | support 92 | take 93 | tax 94 | think 95 | transmit 96 | try 97 | vest 98 | vote 99 | will 100 | write 101 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/.gitignore: -------------------------------------------------------------------------------- 1 | words.txt 2 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/Makefile: -------------------------------------------------------------------------------- 1 | scarlet: 2 | wget -O scarlet.txt https://www.gutenberg.org/files/25344/25344-0.txt 3 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/fox.txt: -------------------------------------------------------------------------------- 1 | The quick brown fox jumps over the lazy dog. 2 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/issa.txt: -------------------------------------------------------------------------------- 1 | Selected Haiku by Issa 2 | 3 | Don't worry, spiders, 4 | I keep house 5 | casually. 6 | 7 | New Year's Day- 8 | everything is in blossom! 9 | I feel about average. 10 | 11 | The snow is melting 12 | and the village is flooded 13 | with children. 14 | 15 | Goes out, 16 | comes back- 17 | the love life of a cat. 18 | 19 | Mosquito at my ear- 20 | does he think 21 | I'm deaf? 22 | 23 | Under the evening moon 24 | the snail 25 | is stripped to the waist. 26 | 27 | Even with insects- 28 | some can sing, 29 | some can't. 30 | 31 | All the time I pray to Buddha 32 | I keep on 33 | killing mosquitoes. 34 | 35 | Napped half the day; 36 | no one 37 | punished me! 38 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/nobody.txt: -------------------------------------------------------------------------------- 1 | I'm Nobody! Who are you? 2 | Are you -- Nobody -- too? 3 | Then there's a pair of us! 4 | Don't tell! they'd advertise -- you know! 5 | 6 | How dreary -- to be -- Somebody! 7 | How public -- like a Frog -- 8 | To tell one's name -- the livelong June -- 9 | To an admiring Bog! 10 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/now.txt: -------------------------------------------------------------------------------- 1 | Now is the time for all good men to come to the aid of the party. 2 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/out.txt: -------------------------------------------------------------------------------- 1 | this is some text 2 | this is some more text 3 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/preamble.txt: -------------------------------------------------------------------------------- 1 | When, in the course of human events, it becomes necessary for one people to 2 | dissolve the political bands which have connected them with another, and to 3 | assume among the powers of the earth, the separate and equal station to 4 | which the laws of nature and of nature's God entitle them, a decent respect 5 | to the opinions of mankind requires that they should declare the causes 6 | which impel them to the separation. 7 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/sonnet-29.txt: -------------------------------------------------------------------------------- 1 | Sonnet 29 2 | William Shakespeare 3 | 4 | When, in disgrace with fortune and men’s eyes, 5 | I all alone beweep my outcast state, 6 | And trouble deaf heaven with my bootless cries, 7 | And look upon myself and curse my fate, 8 | Wishing me like to one more rich in hope, 9 | Featured like him, like him with friends possessed, 10 | Desiring this man’s art and that man’s scope, 11 | With what I most enjoy contented least; 12 | Yet in these thoughts myself almost despising, 13 | Haply I think on thee, and then my state, 14 | (Like to the lark at break of day arising 15 | From sullen earth) sings hymns at heaven’s gate; 16 | For thy sweet love remembered such wealth brings 17 | That then I scorn to change my state with kings. 18 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/spiders.txt: -------------------------------------------------------------------------------- 1 | Don't worry, spiders, 2 | I keep house 3 | casually. 4 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/the-bustle.txt: -------------------------------------------------------------------------------- 1 | The bustle in a house 2 | The morning after death 3 | Is solemnest of industries 4 | Enacted upon earth,-- 5 | 6 | The sweeping up the heart, 7 | And putting love away 8 | We shall not want to use again 9 | Until eternity. 10 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/inputs/words.txt.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/demo/demo_20_password/inputs/words.txt.zip -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/scarlet/adjs.txt: -------------------------------------------------------------------------------- 1 | alive 2 | awful 3 | bad 4 | beautiful 5 | bitter 6 | black 7 | bright 8 | calm 9 | certain 10 | close 11 | common 12 | conscious 13 | dark 14 | dead 15 | deep 16 | dreary 17 | early 18 | earthly 19 | evil 20 | fair 21 | familiar 22 | few 23 | first 24 | former 25 | free 26 | full 27 | good 28 | gray 29 | great 30 | guilty 31 | happy 32 | hard 33 | heavy 34 | high 35 | holy 36 | human 37 | kind 38 | large 39 | last 40 | latter 41 | least 42 | less 43 | like 44 | little 45 | lonely 46 | long 47 | many 48 | miserable 49 | moral 50 | more 51 | most 52 | much 53 | native 54 | natural 55 | new 56 | next 57 | old 58 | only 59 | open 60 | other 61 | outward 62 | own 63 | pale 64 | peculiar 65 | physical 66 | poor 67 | present 68 | professional 69 | public 70 | quiet 71 | real 72 | red 73 | rich 74 | sacred 75 | sad 76 | same 77 | scarlet 78 | secret 79 | sensitive 80 | short 81 | sinful 82 | singular 83 | small 84 | solemn 85 | spiritual 86 | stern 87 | strange 88 | strong 89 | such 90 | terrible 91 | true 92 | ugly 93 | venerable 94 | very 95 | well 96 | white 97 | whole 98 | wild 99 | wise 100 | young 101 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/scarlet/nouns.txt: -------------------------------------------------------------------------------- 1 | age 2 | air 3 | arm 4 | art 5 | aspect 6 | bosom 7 | breast 8 | brook 9 | character 10 | child 11 | church 12 | clergyman 13 | crowd 14 | day 15 | death 16 | door 17 | earth 18 | evil 19 | expression 20 | eye 21 | face 22 | father 23 | figure 24 | forest 25 | friend 26 | hand 27 | hath 28 | head 29 | heart 30 | hour 31 | house 32 | idea 33 | impulse 34 | infant 35 | iron 36 | kind 37 | law 38 | letter 39 | life 40 | light 41 | look 42 | magistrate 43 | man 44 | market 45 | matter 46 | mind 47 | minister 48 | moment 49 | mother 50 | name 51 | nature 52 | night 53 | nothing 54 | object 55 | one 56 | pain 57 | part 58 | passion 59 | people 60 | person 61 | physician 62 | place 63 | point 64 | power 65 | prison 66 | purpose 67 | scaffold 68 | scene 69 | secret 70 | self 71 | shadow 72 | shame 73 | side 74 | sin 75 | smile 76 | something 77 | sorrow 78 | soul 79 | spirit 80 | state 81 | step 82 | street 83 | sunshine 84 | sympathy 85 | thing 86 | thou 87 | thought 88 | time 89 | token 90 | town 91 | tree 92 | truth 93 | voice 94 | way 95 | window 96 | woman 97 | word 98 | world 99 | year 100 | “ 101 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/scarlet/verbs.txt: -------------------------------------------------------------------------------- 1 | answer 2 | appear 3 | approach 4 | ask 5 | be 6 | bear 7 | become 8 | begin 9 | behold 10 | believe 11 | break 12 | bring 13 | burn 14 | call 15 | can 16 | cast 17 | catch 18 | come 19 | continue 20 | could 21 | cover 22 | cry 23 | deem 24 | die 25 | discern 26 | do 27 | draw 28 | embroider 29 | enter 30 | fall 31 | feel 32 | find 33 | gather 34 | gaze 35 | give 36 | go 37 | grow 38 | have 39 | hear 40 | hide 41 | hold 42 | imagine 43 | keep 44 | know 45 | laugh 46 | lay 47 | lead 48 | learn 49 | leave 50 | let 51 | lie 52 | live 53 | look 54 | lose 55 | love 56 | make 57 | may 58 | mean 59 | meet 60 | must 61 | need 62 | offer 63 | pass 64 | play 65 | possess 66 | put 67 | recognize 68 | remain 69 | reply 70 | reveal 71 | rise 72 | run 73 | save 74 | say 75 | see 76 | seek 77 | seem 78 | set 79 | shall 80 | should 81 | show 82 | sit 83 | smile 84 | speak 85 | stand 86 | take 87 | talk 88 | teach 89 | tell 90 | think 91 | throw 92 | touch 93 | turn 94 | walk 95 | wear 96 | whisper 97 | will 98 | win 99 | work 100 | would 101 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_20_password/unit.py: -------------------------------------------------------------------------------- 1 | import random 2 | from password import clean, ransom, l33t 3 | 4 | 5 | # -------------------------------------------------- 6 | def test_clean(): 7 | """Test clean""" 8 | 9 | assert clean('') == '' 10 | assert clean("states,") == 'states' 11 | assert clean("Don't") == 'Dont' 12 | 13 | 14 | # -------------------------------------------------- 15 | def test_ransom(): 16 | """Test ransom""" 17 | 18 | state = random.getstate() 19 | random.seed(1) 20 | assert (ransom('Money') == 'moNeY') 21 | assert (ransom('Dollars') == 'DOLlaRs') 22 | random.setstate(state) 23 | 24 | 25 | # -------------------------------------------------- 26 | def test_l33t(): 27 | """Test l33t""" 28 | 29 | state = random.getstate() 30 | random.seed(1) 31 | assert l33t('Money') == 'moNeY{' 32 | assert l33t('Dollars') == 'D0ll4r5`' 33 | random.setstate(state) 34 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_example_argparse.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python3 2 | """Crow's Nest""" 3 | 4 | import argparse 5 | 6 | 7 | # -------------------------------------------------- 8 | def get_args(): 9 | """Get command-line arguments""" 10 | 11 | parser = argparse.ArgumentParser( 12 | description="Crow's Nest -- choose the correct article", 13 | formatter_class=argparse.ArgumentDefaultsHelpFormatter) 14 | 15 | parser.add_argument('word', metavar='word', help='A word') 16 | 17 | return parser.parse_args() 18 | 19 | 20 | # -------------------------------------------------- 21 | def main(): 22 | """Make a jazz noise here""" 23 | 24 | args = get_args() 25 | word = args.word 26 | article = 'an' if word[0].lower() in 'aeiou' else 'a' 27 | 28 | print(f'Ahoy, Captain, {article} {word} off the larboard bow!') 29 | 30 | 31 | # -------------------------------------------------- 32 | if __name__ == '__main__': 33 | main() 34 | -------------------------------------------------------------------------------- /test/test_files/demo/demo_example_inheritance.py: -------------------------------------------------------------------------------- 1 | class Rectangle: 2 | def __init__(self, length, width): 3 | self.length = length 4 | self.width = width 5 | 6 | def area(self): 7 | return self.length * self.width 8 | 9 | class Square(Rectangle): 10 | def __init__(self, length): 11 | super().__init__(length, length) 12 | 13 | class VolumeMixin: 14 | def volume(self): 15 | return self.area() * self.height 16 | 17 | class Cube(VolumeMixin, Square): 18 | def __init__(self, length): 19 | super().__init__(length) 20 | self.height = length 21 | 22 | def face_area(self): 23 | return super().area() 24 | 25 | def surface_area(self): 26 | return super().area() * 6 27 | 28 | 29 | cube = Cube(2) 30 | surface=cube.surface_area() 31 | volume=cube.volume() 32 | print(surface, volume) 33 | -------------------------------------------------------------------------------- /test/test_files/pylops/.coveragerc: -------------------------------------------------------------------------------- 1 | [run] 2 | branch = True 3 | source = pylops -------------------------------------------------------------------------------- /test/test_files/pylops/.gitignore: -------------------------------------------------------------------------------- 1 | # OS generated files # 2 | .*.swp 3 | *.py[cod] 4 | .DS_Store 5 | .DS_Store? 6 | ._* 7 | .Spotlight-V100 8 | .Trashes 9 | ehthumbs.db 10 | Thumbs.db 11 | .idea/* 12 | static/* 13 | db.sqlite3 14 | 15 | # Build # 16 | build 17 | dist 18 | pylops.egg-info/ 19 | 20 | # setuptools_scm generated # 21 | pylops/version.py 22 | 23 | # Development # 24 | .ipynb_checkpoints/ 25 | notebooks 26 | TODO 27 | 28 | # Documentation # 29 | docs/build 30 | docs/source/api/generated 31 | docs/source/gallery 32 | docs/source/tutorials 33 | 34 | # Pylint # 35 | pylint_plot.py 36 | pylintrc 37 | 38 | # Coverage reports 39 | COVERAGE 40 | .coverage 41 | coverage.xml 42 | htmlcov/ 43 | 44 | # Airspeed velocity benchmarks 45 | ASV 46 | .asv/ 47 | asv.conf.json 48 | benchmarks/ -------------------------------------------------------------------------------- /test/test_files/pylops/.travis.yml: -------------------------------------------------------------------------------- 1 | language: python 2 | 3 | python: 4 | - "3.6" 5 | 6 | os: 7 | - linux 8 | 9 | script: 10 | - pip3 install -r requirements-dev.txt 11 | - pip3 install coverage codacy-coverage 12 | - pip3 install . 13 | - python3 setup.py test 14 | 15 | after_success: 16 | - 'if [ ! -z "${CODACY_PROJECT_TOKEN}" ]; then coverage run setup.py test; coverage xml; bash <(curl -Ls https://coverage.codacy.com/get.sh) report -r coverage.xml; fi' -------------------------------------------------------------------------------- /test/test_files/pylops/MANIFEST.in: -------------------------------------------------------------------------------- 1 | exclude .* 2 | exclude environment.yml requirements.txt Makefile 3 | exclude environment-dev.yml requirements-dev.txt azure-pipelines.yml readthedocs.yml 4 | recursive-exclude docs * 5 | recursive-exclude examples * 6 | recursive-exclude pytests * 7 | recursive-exclude testdata * 8 | recursive-exclude tutorials * 9 | -------------------------------------------------------------------------------- /test/test_files/pylops/Makefile: -------------------------------------------------------------------------------- 1 | PIP := $(shell command -v pip3 2> /dev/null || command which pip 2> /dev/null) 2 | PYTHON := $(shell command -v python3 2> /dev/null || command which python 2> /dev/null) 3 | 4 | .PHONY: install dev-install install_conda dev-install_conda tests doc docupdate 5 | 6 | pipcheck: 7 | ifndef PIP 8 | $(error "Ensure pip or pip3 are in your PATH") 9 | endif 10 | @echo Using pip: $(PIP) 11 | 12 | pythoncheck: 13 | ifndef PYTHON 14 | $(error "Ensure python or python3 are in your PATH") 15 | endif 16 | @echo Using python: $(PYTHON) 17 | 18 | install: 19 | make pipcheck 20 | $(PIP) install -r requirements.txt && $(PIP) install . 21 | 22 | dev-install: 23 | make pipcheck 24 | $(PIP) install -r requirements-dev.txt && $(PIP) install -e . 25 | 26 | install_conda: 27 | conda env create -f environment.yml && source activate pylops && pip install . 28 | 29 | dev-install_conda: 30 | conda env create -f environment-dev.yml && source activate pylops && pip install -e . 31 | 32 | tests: 33 | make pythoncheck 34 | $(PYTHON) setup.py test 35 | 36 | doc: 37 | cd docs && rm -rf source/api/generated && rm -rf source/gallery &&\ 38 | rm -rf source/tutorials && rm -rf build && make html && cd .. 39 | 40 | docupdate: 41 | cd docs && make html && cd .. 42 | -------------------------------------------------------------------------------- /test/test_files/pylops/docs/Makefile: -------------------------------------------------------------------------------- 1 | # Minimal makefile for Sphinx documentation 2 | # 3 | 4 | # Disable numba 5 | # export NUMBA_DISABLE_JIT=1 6 | 7 | # You can set these variables from the command line. 8 | SPHINXOPTS = 9 | SPHINXBUILD = sphinx-build 10 | SPHINXPROJ = Pylops 11 | SOURCEDIR = source 12 | BUILDDIR = build 13 | 14 | # Put it first so that "make" without argument is like "make help". 15 | help: 16 | @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) 17 | 18 | .PHONY: help Makefile 19 | 20 | # Catch-all target: route all unknown targets to Sphinx using the new 21 | # "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). 22 | %: Makefile 23 | @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/_static/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/pylops/docs/source/_static/favicon.ico -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/_static/pylops.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/pylops/docs/source/_static/pylops.png -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/_static/pylops_b.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/pylops/docs/source/_static/pylops_b.png -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/_templates/autosummary/base.rst: -------------------------------------------------------------------------------- 1 | {{ fullname | escape | underline }} 2 | 3 | .. currentmodule:: {{ module }} 4 | 5 | .. auto{{ objtype }}:: {{ objname }} 6 | 7 | .. raw:: html 8 | 9 |
10 | -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/_templates/autosummary/class.rst: -------------------------------------------------------------------------------- 1 | {{ fullname | escape | underline }} 2 | 3 | .. currentmodule:: {{ module }} 4 | 5 | .. autoclass:: {{ objname }} 6 | 7 | .. rubric:: Methods 8 | 9 | .. autosummary:: 10 | {% for item in methods %} 11 | ~{{ objname }}.{{ item }} 12 | {%- endfor %} 13 | 14 | {# .. rubric:: Attributes#} 15 | {##} 16 | {# .. autosummary::#} 17 | {# {% for item in attributes %}#} 18 | {# ~{{ objname }}.{{ item }}#} 19 | {# {%- endfor %}#} 20 | 21 | .. raw:: html 22 | 23 |
24 | 25 | 26 | .. include:: backreferences/{{ fullname }}.examples 27 | 28 | .. raw:: html 29 | 30 |
31 | 32 | 33 | {#{% for item in methods %} #} 34 | {#{% if item != '__init__' %} #} 35 | {#.. automethod:: {{ objname }}.{{ item }} #} 36 | {#{% endif %} #} 37 | {#{% endfor %} #} 38 | 39 | {#.. raw:: html #} 40 | {# #} 41 | {#
#} 42 | 43 | -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/_templates/autosummary/exception.rst: -------------------------------------------------------------------------------- 1 | {{ fullname | escape | underline }} 2 | 3 | .. currentmodule:: {{ module }} 4 | 5 | .. autoexception:: {{ objname }} 6 | 7 | 8 | .. raw:: html 9 | 10 |
11 | 12 | -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/_templates/autosummary/function.rst: -------------------------------------------------------------------------------- 1 | {{ fullname | escape | underline }} 2 | 3 | .. currentmodule:: {{ module }} 4 | 5 | .. autofunction:: {{ objname }} 6 | 7 | .. include:: backreferences/{{ fullname }}.examples 8 | 9 | .. raw:: html 10 | 11 |
12 | 13 | -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/_templates/autosummary/module.rst: -------------------------------------------------------------------------------- 1 | .. raw:: html 2 | 3 |
4 | 5 | ``{{ fullname }}`` 6 | {% for i in range(fullname|length + 15) %}-{% endfor %} 7 | 8 | .. raw:: html 9 | 10 |
11 | 12 | .. automodule:: {{ fullname }} 13 | 14 | {% block classes %} 15 | {% if classes %} 16 | .. rubric:: Classes 17 | 18 | .. autosummary:: 19 | :toctree: ./ 20 | {% for item in classes %} 21 | {{ fullname }}.{{ item }} 22 | {% endfor %} 23 | {% endif %} 24 | {% endblock %} 25 | 26 | 27 | {% block functions %} 28 | {% if functions %} 29 | .. rubric:: Functions 30 | 31 | .. autosummary:: 32 | :toctree: ./ 33 | {% for item in functions %} 34 | {{ fullname }}.{{ item }} 35 | {% endfor %} 36 | {% endif %} 37 | {% endblock %} 38 | 39 | 40 | {% block exceptions %} 41 | {% if exceptions %} 42 | .. rubric:: Exceptions 43 | 44 | .. autosummary:: 45 | :toctree: ./ 46 | {% for item in exceptions %} 47 | {{ fullname }}.{{ item }} 48 | {% endfor %} 49 | {% endif %} 50 | {% endblock %} 51 | 52 | .. raw:: html 53 | 54 |
55 | -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/_templates/layout.html: -------------------------------------------------------------------------------- 1 | {# Import the theme's layout. #} 2 | {% extends "!layout.html" %} 3 | 4 | {% block extrahead %} 5 | {# Include require.js so that we can use WorldWind #} 6 | 7 | {% endblock %} 8 | 9 | 10 | {% block htmltitle %} 11 | {% if title == '' or title == 'Home' %} 12 | {{ docstitle|e }} 13 | {% else %} 14 | {{ title|striptags|e }}{{ titlesuffix }} 15 | {% endif %} 16 | {% endblock %} 17 | 18 | 19 | {% block menu %} 20 | {{ super() }} 21 | 22 | {% if menu_links %} 23 |

24 | 25 | {% if menu_links_name %} 26 | {{ menu_links_name }} 27 | {% else %} 28 | External links 29 | {% endif %} 30 | 31 |

32 |
    33 | {% for text, link in menu_links %} 34 |
  • {{ text }}
    • 35 | {% endfor %} 36 |
37 | {% endif %} 38 | {% endblock %} 39 | -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/citing.rst: -------------------------------------------------------------------------------- 1 | .. _citing: 2 | 3 | Citing 4 | ====== 5 | When using ``pylops`` in scientific publications, please cite the following paper: 6 | 7 | - Ravasi, M., and Vasconcelos I., *PyLops--A linear-operator Python library for scalable algebra and optimization*, 8 | Software X, (2020). `link `_. 9 | -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/credits.rst: -------------------------------------------------------------------------------- 1 | .. _credits: 2 | 3 | Contributors 4 | ============ 5 | 6 | * `Matteo Ravasi `_, mrava87 7 | * `Carlos da Costa `_, cako 8 | * `Dieter Werthmüller `_, prisae 9 | * `Tristan van Leeuwen `_, TristanvanLeeuwen 10 | * `Leonardo Uieda `_, leouieda 11 | * `Filippo Broggini `_, filippo82 12 | * `Tyler Hughes `_, twhughes 13 | * `Lyubov Skopintseva `_, lskopintseva 14 | * `Francesco Picetti `_, fpicetti 15 | * `Alan Richardson `_, ar4 16 | * `BurningKarl `_, BurningKarl -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/extensions.rst: -------------------------------------------------------------------------------- 1 | .. _extensions: 2 | 3 | Extensions 4 | ========== 5 | 6 | PyLops brings to users the power of linear operators in a simple and easy 7 | to use programming interface. 8 | 9 | While very powerful on its own, this library is further extended to take 10 | advantage of more advanced computational resources, either in terms of 11 | **multiple-node clusters** or **GPUs**. Moreover, some indipendent small 12 | libraries are created to use third party softwares that cannot be included as 13 | dependencies to our main library for licensing issues but may be useful 14 | for academic purposes. 15 | 16 | Spin-off projects that aim at extending the capabilities of PyLops are: 17 | 18 | * `PyLops-GPU `_ 19 | * `PyLops-Distributed `_ 20 | * `curvelops `_ 21 | -------------------------------------------------------------------------------- /test/test_files/pylops/docs/source/faq.rst: -------------------------------------------------------------------------------- 1 | .. _faq: 2 | 3 | Frequenty Asked Questions 4 | ========================= 5 | 6 | **1. Can I visualize my operator?** 7 | 8 | Yes, you can. Every operator has a method called ``todense`` that will return the dense matrix equivalent of 9 | the operaotor. Note, however, that in order to do so we need to allocate a numpy array of the size of your 10 | operator and apply the operator N times, where N is the number of columns of the operator. The allocation can 11 | be very heavy on your memory and the computation may take long time, so use it with care only for small toy 12 | examples to understand what your operator looks like. This method should however not be abused, as the reason of 13 | working with linear operators is indeed that you don't really need to access the explicit matrix representation 14 | of an operator. 15 | 16 | 17 | **2. Can I have an older version of cupy installed in my system (**``cupy-cudaXX<8.1.0``**)?** 18 | Yes. Nevertheless you need to tell PyLops that you don't want to use its ``cupy`` 19 | backend by setting the environment variable ``CUPY_PYLOPS=0``. Failing to do so 20 | will lead to an error when you import ``pylops`` because some of the ``cupyx`` 21 | routines that we use are not available in earlier version of cupy. -------------------------------------------------------------------------------- /test/test_files/pylops/environment-dev.yml: -------------------------------------------------------------------------------- 1 | name: pylops 2 | channels: 3 | - defaults 4 | - conda-forge 5 | - numba 6 | dependencies: 7 | - python>=3.6.4 8 | - numpy>=1.15.0 9 | - scipy>=1.4.0 10 | - pyfftw 11 | - pywavelets 12 | - matplotlib 13 | - ipython 14 | - pytest 15 | - Sphinx 16 | - numpydoc 17 | - numba 18 | - icc_rt 19 | - pip: 20 | - scikit-fmm 21 | - spgl1 22 | - pytest-runner 23 | - setuptools_scm 24 | - sphinx-rtd-theme 25 | - sphinx-gallery 26 | - nbsphinx 27 | - image -------------------------------------------------------------------------------- /test/test_files/pylops/environment.yml: -------------------------------------------------------------------------------- 1 | name: pylops 2 | channels: 3 | - defaults 4 | dependencies: 5 | - python>=3.6.4 6 | - numpy>=1.15.0 7 | - scipy>=1.4.0 -------------------------------------------------------------------------------- /test/test_files/pylops/examples/README.txt: -------------------------------------------------------------------------------- 1 | .. _general_examples: 2 | 3 | PyLops gallery 4 | -------------- 5 | 6 | Below is a gallery of examples -------------------------------------------------------------------------------- /test/test_files/pylops/examples/plot_conj.py: -------------------------------------------------------------------------------- 1 | """ 2 | Conj 3 | ==== 4 | 5 | This example shows how to use the :py:class:`pylops.basicoperators.Conj` 6 | operator. 7 | This operator returns the complex conjugate in both forward and adjoint 8 | modes (it is self adjoint). 9 | """ 10 | import numpy as np 11 | import matplotlib.pyplot as plt 12 | import matplotlib.gridspec as pltgs 13 | 14 | import pylops 15 | 16 | plt.close('all') 17 | 18 | ############################################################################### 19 | # Let's define a Conj operator to get the complex conjugate 20 | # of the input. 21 | 22 | M = 5 23 | x = np.arange(M) + 1j * np.arange(M)[::-1] 24 | Rop = pylops.basicoperators.Conj(M, dtype='complex128') 25 | 26 | y = Rop*x 27 | xadj = Rop.H*y 28 | 29 | _, axs = plt.subplots(1, 3, figsize=(10, 4)) 30 | axs[0].plot(np.real(x), lw=2, label='Real') 31 | axs[0].plot(np.imag(x), lw=2, label='Imag') 32 | axs[0].legend() 33 | axs[0].set_title('Input') 34 | axs[1].plot(np.real(y), lw=2, label='Real') 35 | axs[1].plot(np.imag(y), lw=2, label='Imag') 36 | axs[1].legend() 37 | axs[1].set_title('Forward of Input') 38 | axs[2].plot(np.real(xadj), lw=2, label='Real') 39 | axs[2].plot(np.imag(xadj), lw=2, label='Imag') 40 | axs[2].legend() 41 | axs[2].set_title('Adjoint of Forward') 42 | -------------------------------------------------------------------------------- /test/test_files/pylops/examples/plot_imag.py: -------------------------------------------------------------------------------- 1 | """ 2 | Imag 3 | ==== 4 | 5 | This example shows how to use the :py:class:`pylops.basicoperators.Imag` 6 | operator. 7 | This operator returns the imaginary part of the data as a real value in 8 | forward mode, and the real part of the model as an imaginary value in 9 | adjoint mode (with zero real part). 10 | """ 11 | import numpy as np 12 | import matplotlib.pyplot as plt 13 | import matplotlib.gridspec as pltgs 14 | 15 | import pylops 16 | 17 | plt.close('all') 18 | 19 | ############################################################################### 20 | # Let's define a Imag operator :math:`\mathbf{\Im}` to extract the imaginary 21 | # component of the input. 22 | 23 | M = 5 24 | x = np.arange(M) + 1j * np.arange(M)[::-1] 25 | Rop = pylops.basicoperators.Imag(M, dtype='complex128') 26 | 27 | y = Rop*x 28 | xadj = Rop.H*y 29 | 30 | _, axs = plt.subplots(1, 3, figsize=(10, 4)) 31 | axs[0].plot(np.real(x), lw=2, label='Real') 32 | axs[0].plot(np.imag(x), lw=2, label='Imag') 33 | axs[0].legend() 34 | axs[0].set_title('Input') 35 | axs[1].plot(np.real(y), lw=2, label='Real') 36 | axs[1].plot(np.imag(y), lw=2, label='Imag') 37 | axs[1].legend() 38 | axs[1].set_title('Forward of Input') 39 | axs[2].plot(np.real(xadj), lw=2, label='Real') 40 | axs[2].plot(np.imag(xadj), lw=2, label='Imag') 41 | axs[2].legend() 42 | axs[2].set_title('Adjoint of Forward') 43 | -------------------------------------------------------------------------------- /test/test_files/pylops/examples/plot_real.py: -------------------------------------------------------------------------------- 1 | """ 2 | Real 3 | ==== 4 | 5 | This example shows how to use the :py:class:`pylops.basicoperators.Real` 6 | operator. 7 | This operator returns the real part of the data in forward and adjoint mode, 8 | but the forward output will be a real number, while the adjoint output will 9 | be a complex number with a zero-valued imaginary part. 10 | """ 11 | import numpy as np 12 | import matplotlib.pyplot as plt 13 | import matplotlib.gridspec as pltgs 14 | 15 | import pylops 16 | 17 | plt.close('all') 18 | 19 | ############################################################################### 20 | # Let's define a Real operator :math:`\mathbf{\Re}` to extract the real 21 | # component of the input. 22 | 23 | M = 5 24 | x = np.arange(M) + 1j * np.arange(M)[::-1] 25 | Rop = pylops.basicoperators.Real(M, dtype='complex128') 26 | 27 | y = Rop*x 28 | xadj = Rop.H*y 29 | 30 | _, axs = plt.subplots(1, 3, figsize=(10, 4)) 31 | axs[0].plot(np.real(x), lw=2, label='Real') 32 | axs[0].plot(np.imag(x), lw=2, label='Imag') 33 | axs[0].legend() 34 | axs[0].set_title('Input') 35 | axs[1].plot(np.real(y), lw=2, label='Real') 36 | axs[1].plot(np.imag(y), lw=2, label='Imag') 37 | axs[1].legend() 38 | axs[1].set_title('Forward of Input') 39 | axs[2].plot(np.real(xadj), lw=2, label='Real') 40 | axs[2].plot(np.imag(xadj), lw=2, label='Imag') 41 | axs[2].legend() 42 | axs[2].set_title('Adjoint of Forward') 43 | -------------------------------------------------------------------------------- /test/test_files/pylops/pylops/avo/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/pylops/pylops/avo/__init__.py -------------------------------------------------------------------------------- /test/test_files/pylops/pylops/basicoperators/__init__.py: -------------------------------------------------------------------------------- 1 | from .FunctionOperator import FunctionOperator 2 | from .MemoizeOperator import MemoizeOperator 3 | from .Regression import Regression 4 | from .LinearRegression import LinearRegression 5 | from .MatrixMult import MatrixMult 6 | from .Diagonal import Diagonal 7 | from .Zero import Zero 8 | from .Identity import Identity 9 | from .Restriction import Restriction 10 | from .Flip import Flip 11 | from .Symmetrize import Symmetrize 12 | from .Spread import Spread 13 | from .Transpose import Transpose 14 | from .Roll import Roll 15 | from .Pad import Pad 16 | from .Sum import Sum 17 | from .Real import Real 18 | from .Imag import Imag 19 | from .Conj import Conj 20 | 21 | from .VStack import VStack 22 | from .HStack import HStack 23 | from .Block import Block 24 | from .BlockDiag import BlockDiag 25 | from .Kronecker import Kronecker 26 | 27 | from .Smoothing1D import Smoothing1D 28 | from .Smoothing2D import Smoothing2D 29 | 30 | from .CausalIntegration import CausalIntegration 31 | from .FirstDerivative import FirstDerivative 32 | from .SecondDerivative import SecondDerivative 33 | from .Laplacian import Laplacian 34 | from .Gradient import Gradient 35 | from .DirectionalDerivative import FirstDirectionalDerivative 36 | from .DirectionalDerivative import SecondDirectionalDerivative 37 | -------------------------------------------------------------------------------- /test/test_files/pylops/pylops/optimization/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/pylops/pylops/optimization/__init__.py -------------------------------------------------------------------------------- /test/test_files/pylops/pylops/signalprocessing/__init__.py: -------------------------------------------------------------------------------- 1 | from .FFT import FFT 2 | from .FFT2D import FFT2D 3 | from .FFTND import FFTND 4 | from .Convolve1D import Convolve1D 5 | from .ConvolveND import ConvolveND 6 | from .Convolve2D import Convolve2D 7 | from .Interp import Interp 8 | from .Bilinear import Bilinear 9 | from .Radon2D import Radon2D 10 | from .Radon3D import Radon3D 11 | from .Sliding1D import Sliding1D 12 | from .Sliding2D import Sliding2D 13 | from .Sliding3D import Sliding3D 14 | from .Patch2D import Patch2D 15 | from .Fredholm1 import Fredholm1 16 | from .DWT import DWT 17 | from .DWT2D import DWT2D 18 | from .Seislet import Seislet 19 | from .ChirpRadon2D import ChirpRadon2D 20 | from .ChirpRadon3D import ChirpRadon3D -------------------------------------------------------------------------------- /test/test_files/pylops/pylops/utils/__init__.py: -------------------------------------------------------------------------------- 1 | from .utils import Report 2 | from .dottest import dottest 3 | from .deps import * 4 | from .backend import * 5 | from .multiproc import * -------------------------------------------------------------------------------- /test/test_files/pylops/pylops/utils/deps.py: -------------------------------------------------------------------------------- 1 | import os 2 | from importlib import util 3 | 4 | numba_enabled = util.find_spec("numba") is not None 5 | cupy_enabled = util.find_spec("cupy") is not None and \ 6 | int(os.getenv('CUPY_PYLOPS', 1)) == 1 7 | cusignal_enabled = util.find_spec("cusignal") is not None and \ 8 | int(os.getenv('CUSIGNAL_PYLOPS', 1)) == 1 -------------------------------------------------------------------------------- /test/test_files/pylops/pylops/waveeqprocessing/__init__.py: -------------------------------------------------------------------------------- 1 | from .mdd import MDC 2 | from .mdd import MDD 3 | from .marchenko import Marchenko 4 | from .seismicinterpolation import SeismicInterpolation 5 | from .wavedecomposition import PressureToVelocity, UpDownComposition2D, \ 6 | UpDownComposition3D, WavefieldDecomposition 7 | from .oneway import PhaseShift, Deghosting 8 | from .lsm import Demigration, LSM 9 | -------------------------------------------------------------------------------- /test/test_files/pylops/pytests/test_eigs.py: -------------------------------------------------------------------------------- 1 | import pytest 2 | 3 | import numpy as np 4 | 5 | from pylops.basicoperators import MatrixMult 6 | from pylops.optimization.eigs import power_iteration 7 | 8 | par1 = {'n': 21, 'imag': 0, 'dtype': 'float32'} # square, real 9 | par2 = {'n': 21, 'imag': 1j, 'dtype': 'complex64'} # square, complex 10 | 11 | 12 | @pytest.mark.parametrize("par", [(par1), (par2)]) 13 | def test_power_iteration(par): 14 | """Max eigenvalue computation with power iteration method vs. scipy methods 15 | """ 16 | np.random.seed(10) 17 | 18 | A = np.random.randn(par['n'], par['n']) + \ 19 | par['imag'] * np.random.randn(par['n'], par['n']) 20 | A1 = np.conj(A.T) @ A 21 | 22 | # non-symmetric 23 | Aop = MatrixMult(A) 24 | eig = power_iteration(Aop, niter=200, tol=0)[0] 25 | eig_np = np.max(np.abs(np.linalg.eig(A)[0])) 26 | 27 | assert np.abs(np.abs(eig) - eig_np) < 1e-3 28 | 29 | # symmetric 30 | A1op = MatrixMult(A1) 31 | eig = power_iteration(A1op, niter=200, tol=0)[0] 32 | eig_np = np.max(np.abs(np.linalg.eig(A1)[0])) 33 | 34 | assert np.abs(np.abs(eig) - eig_np) < 1e-3 35 | -------------------------------------------------------------------------------- /test/test_files/pylops/pytests/test_utils.py: -------------------------------------------------------------------------------- 1 | from pylops import utils 2 | 3 | # Optional import 4 | try: 5 | import scooby 6 | except ImportError: 7 | scooby = False 8 | 9 | 10 | def test_report(capsys): 11 | out, _ = capsys.readouterr() # Empty capsys 12 | 13 | # Reporting is done by the external package scooby. 14 | # We just ensure the shown packages do not change (core and optional). 15 | if scooby: 16 | out1 = utils.Report() 17 | out2 = scooby.Report(core=['numpy', 'scipy', 'pylops'], 18 | optional=['IPython', 'matplotlib', 'numba']) 19 | 20 | # Ensure they're the same; exclude time to avoid errors. 21 | assert out1.__repr__()[115:] == out2.__repr__()[115:] 22 | 23 | else: # soft dependency 24 | _ = utils.Report() 25 | out, _ = capsys.readouterr() # Empty capsys 26 | assert 'NOTE: `pylops.Report` requires `scooby`. Install it via' in out 27 | -------------------------------------------------------------------------------- /test/test_files/pylops/pytests/test_wavelets.py: -------------------------------------------------------------------------------- 1 | import pytest 2 | import numpy as np 3 | 4 | from pylops.utils.wavelets import ricker, gaussian 5 | 6 | par1 = {'nt': 21, 'dt':0.004} # odd samples 7 | par2 = {'nt': 20, 'dt':0.004} # even samples 8 | 9 | 10 | @pytest.mark.parametrize("par", [(par1), (par2)]) 11 | def test_ricker(par): 12 | """Create ricker wavelet and check size and central value 13 | """ 14 | t = np.arange(par['nt'])*par['dt'] 15 | wav, twav, wcenter = ricker(t, f0=20) 16 | 17 | assert twav.size == (par['nt'] - 1 if par['nt'] % 2 == 0 18 | else par['nt']) * 2 - 1 19 | assert wav.shape[0] == (par['nt']-1 if par['nt'] % 2 == 0 20 | else par['nt'])*2-1 21 | assert wav[wcenter] == 1 22 | 23 | 24 | @pytest.mark.parametrize("par", [(par1), (par2)]) 25 | def test_gaussian(par): 26 | """Create gaussian wavelet and check size and central value 27 | """ 28 | t = np.arange(par['nt'])*par['dt'] 29 | wav, twav, wcenter = gaussian(t, std=10) 30 | 31 | assert twav.size == (par['nt'] - 1 if par['nt'] % 2 == 0 32 | else par['nt']) * 2 - 1 33 | assert wav.shape[0] == (par['nt']-1 if par['nt'] % 2 == 0 34 | else par['nt'])*2-1 35 | assert wav[wcenter] == 1 36 | -------------------------------------------------------------------------------- /test/test_files/pylops/readthedocs.yml: -------------------------------------------------------------------------------- 1 | # .readthedocs.yml 2 | 3 | python: 4 | version: 3.6 5 | setup_py_install: true 6 | 7 | requirements_file: requirements-dev.txt -------------------------------------------------------------------------------- /test/test_files/pylops/requirements-dev.txt: -------------------------------------------------------------------------------- 1 | numpy>=1.15.0 2 | scipy>=1.4.0 3 | numba 4 | pyfftw 5 | PyWavelets 6 | spgl1 7 | scikit-fmm 8 | matplotlib 9 | ipython 10 | pytest 11 | pytest-runner 12 | setuptools_scm 13 | Sphinx 14 | sphinx-rtd-theme 15 | sphinx-gallery 16 | numpydoc 17 | nbsphinx 18 | image -------------------------------------------------------------------------------- /test/test_files/pylops/requirements.txt: -------------------------------------------------------------------------------- 1 | . 2 | -------------------------------------------------------------------------------- /test/test_files/pylops/setup.cfg: -------------------------------------------------------------------------------- 1 | [aliases] 2 | test=pytest 3 | 4 | [tool:pytest] 5 | addopts = --verbose 6 | python_files = pytests/*.py -------------------------------------------------------------------------------- /test/test_files/pylops/testdata/optimization/shepp_logan_phantom.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/pylops/testdata/optimization/shepp_logan_phantom.npy -------------------------------------------------------------------------------- /test/test_files/pylops/testdata/python.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/pylops/testdata/python.png -------------------------------------------------------------------------------- /test/test_files/pylops/testdata/sigmoid.npz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/pylops/testdata/sigmoid.npz -------------------------------------------------------------------------------- /test/test_files/pylops/tutorials/README.txt: -------------------------------------------------------------------------------- 1 | .. _tutorials: 2 | 3 | Tutorials 4 | --------- -------------------------------------------------------------------------------- /test/test_files/somef/Dockerfile: -------------------------------------------------------------------------------- 1 | from python:3.6 2 | 3 | RUN git clone https://github.com/KnowledgeCaptureAndDiscovery/somef 4 | 5 | RUN cd somef && pip install . 6 | 7 | RUN somef configure -a 8 | -------------------------------------------------------------------------------- /test/test_files/somef/LICENSE: -------------------------------------------------------------------------------- 1 | Copyright (c) 2018 The Python Packaging Authority 2 | 3 | Permission is hereby granted, free of charge, to any person obtaining a copy 4 | of this software and associated documentation files (the "Software"), to deal 5 | in the Software without restriction, including without limitation the rights 6 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 7 | copies of the Software, and to permit persons to whom the Software is 8 | furnished to do so, subject to the following conditions: 9 | 10 | The above copyright notice and this permission notice shall be included in all 11 | copies or substantial portions of the Software. 12 | 13 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 14 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 15 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 16 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 17 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 18 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 19 | SOFTWARE. -------------------------------------------------------------------------------- /test/test_files/somef/docs/paper.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/somef/docs/paper.pdf -------------------------------------------------------------------------------- /test/test_files/somef/docs/requirements.txt: -------------------------------------------------------------------------------- 1 | mkdocs-material -------------------------------------------------------------------------------- /test/test_files/somef/mkdocs.yml: -------------------------------------------------------------------------------- 1 | site_name: SOMEF documentation 2 | nav: 3 | - Home: index.md 4 | - Install: install.md 5 | - Usage: usage.md 6 | - Output: output.md 7 | theme: 8 | name: material 9 | 10 | markdown_extensions: 11 | - admonition 12 | - codehilite: 13 | guess_lang: false 14 | - toc: 15 | permalink: true 16 | -------------------------------------------------------------------------------- /test/test_files/somef/src/somef.egg-info/SOURCES.txt: -------------------------------------------------------------------------------- 1 | README.md 2 | setup.py 3 | src/somef/LICENSE 4 | src/somef/__init__.py 5 | src/somef/__main__.py 6 | src/somef/cli.py 7 | src/somef/configuration.py 8 | src/somef/createExcerpts.py 9 | src/somef/data_to_graph.py 10 | src/somef/header_analysis.py 11 | src/somef.egg-info/PKG-INFO 12 | src/somef.egg-info/SOURCES.txt 13 | src/somef.egg-info/dependency_links.txt 14 | src/somef.egg-info/entry_points.txt 15 | src/somef.egg-info/not-zip-safe 16 | src/somef.egg-info/requires.txt 17 | src/somef.egg-info/top_level.txt 18 | src/somef/models/citation.sk 19 | src/somef/models/description.sk 20 | src/somef/models/installation.sk 21 | src/somef/models/invocation.sk 22 | src/somef/schema/__init__.py 23 | src/somef/schema/software_schema.py 24 | src/somef/test/__init__.py 25 | src/somef/test/test_cli.py 26 | src/somef/test/test_data_to_graph.py 27 | src/somef/test/test_get_data.py 28 | src/somef/test/test_header_analysis.py 29 | src/somef/test/test_utils.py 30 | src/somef/test/utils_for_tests.py 31 | src/somef/test/widoco_readme.md 32 | src/somef/test/widoco_readme_reference.json 33 | src/somef/test/widoco_reference.json -------------------------------------------------------------------------------- /test/test_files/somef/src/somef.egg-info/dependency_links.txt: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /test/test_files/somef/src/somef.egg-info/entry_points.txt: -------------------------------------------------------------------------------- 1 | [console_scripts] 2 | somef = somef.__main__:trycli 3 | 4 | -------------------------------------------------------------------------------- /test/test_files/somef/src/somef.egg-info/not-zip-safe: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /test/test_files/somef/src/somef.egg-info/requires.txt: -------------------------------------------------------------------------------- 1 | Click 2 | bs4 3 | click-option-group 4 | markdown 5 | matplotlib 6 | nltk 7 | numpy 8 | pandas 9 | rdflib 10 | rdflib-jsonld 11 | requests 12 | requests 13 | scikit-learn==0.21.2 14 | textblob 15 | -------------------------------------------------------------------------------- /test/test_files/somef/src/somef.egg-info/top_level.txt: -------------------------------------------------------------------------------- 1 | somef 2 | -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/LICENSE: -------------------------------------------------------------------------------- 1 | Copyright (c) 2018 The Python Packaging Authority 2 | 3 | Permission is hereby granted, free of charge, to any person obtaining a copy 4 | of this software and associated documentation files (the "Software"), to deal 5 | in the Software without restriction, including without limitation the rights 6 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 7 | copies of the Software, and to permit persons to whom the Software is 8 | furnished to do so, subject to the following conditions: 9 | 10 | The above copyright notice and this permission notice shall be included in all 11 | copies or substantial portions of the Software. 12 | 13 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 14 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 15 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 16 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 17 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 18 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 19 | SOFTWARE. -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/__init__.py: -------------------------------------------------------------------------------- 1 | # -*- coding: utf-8 -*- 2 | 3 | __version__ = "0.5.0" 4 | -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/createExcerpts.py: -------------------------------------------------------------------------------- 1 | import argparse 2 | import json 3 | import base64 4 | from urllib.parse import urlparse 5 | import sys 6 | import os 7 | from os import path 8 | import requests 9 | from markdown import Markdown 10 | from bs4 import BeautifulSoup 11 | from io import StringIO 12 | import pickle 13 | import pprint 14 | import pandas as pd 15 | import numpy as np 16 | import re 17 | 18 | ## Markdown to plain text conversion: begin ## 19 | # code snippet from https://stackoverflow.com/a/54923798 20 | def unmark_element(element, stream=None): 21 | if stream is None: 22 | stream = StringIO() 23 | if element.text: 24 | stream.write(element.text) 25 | for sub in element: 26 | unmark_element(sub, stream) 27 | if element.tail: 28 | stream.write(element.tail) 29 | return stream.getvalue() 30 | 31 | # patching Markdown 32 | Markdown.output_formats["plain"] = unmark_element 33 | __md = Markdown(output_format="plain") 34 | __md.stripTopLevelTags = False 35 | 36 | def unmark(text): 37 | return __md.convert(text) 38 | ## Markdown to plain text conversion: end ## 39 | 40 | ## Function takes readme text as input and divides it into excerpts 41 | ## Returns the extracted excerpts 42 | def split_into_excerpts(string_list): 43 | divisions = [] 44 | for text in string_list: 45 | if text: 46 | divisions = divisions + unmark(text).splitlines() 47 | divisions = [i for i in divisions if i] 48 | return divisions -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/evaluation/create_header_corpus.py: -------------------------------------------------------------------------------- 1 | ## This script extracts headers which will be used in the evaluation. 2 | ## This script does not annotate anything. The annotation has to be performed by hand. 3 | input_dir = "../../../experiments/training_corpus/repos" 4 | output ="../../../experiments/header_analysis/header_evaluation/header_evaluation_new.csv" 5 | 6 | import os 7 | import pandas as pd 8 | from somef.header_analysis import extract_header_content 9 | 10 | df_all = pd.DataFrame ({}, columns = ['Repo','Header','Content']) 11 | print(df_all) 12 | for filename in os.listdir(input_dir): 13 | print("Analyzing " + filename) 14 | with open(os.path.join(input_dir, filename), "r") as data_file: 15 | file_text = data_file.read() 16 | df_result = extract_header_content(file_text) 17 | df_result.insert(0,"Repo",filename) 18 | df_all = df_all.append(df_result) 19 | #print(df_result) 20 | df_all.to_csv(output) 21 | -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/models/citation.sk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/somef/src/somef/models/citation.sk -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/models/description.sk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/somef/src/somef/models/description.sk -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/models/installation.sk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/somef/src/somef/models/installation.sk -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/models/invocation.sk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/somef/src/somef/models/invocation.sk -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/schema/__init__.py: -------------------------------------------------------------------------------- 1 | # -*- coding: utf-8 -*- 2 | -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/test/__init__.py: -------------------------------------------------------------------------------- 1 | # -*- coding: utf-8 -*- 2 | -------------------------------------------------------------------------------- /test/test_files/somef/src/somef/test/utils_for_tests.py: -------------------------------------------------------------------------------- 1 | def almost_equal(obj1, obj2, exclude_paths=[]): 2 | def almost_equal_helper(x, y, path): 3 | 4 | if isinstance(x, dict): 5 | if not isinstance(y, dict): 6 | print(f"At path {path}, obj1 was of type dict while obj2 was not") 7 | return False 8 | 9 | if not set(x.keys()) == set(y.keys()): 10 | print(f"At path {path}, obj1 has keys\n{x.keys()}\n while obj2 has keys\n{y.keys()}") 11 | return False 12 | 13 | for key in x.keys(): 14 | current_path = path + [key] 15 | if current_path not in exclude_paths: 16 | if not almost_equal_helper(x[key], y[key], current_path): 17 | return False 18 | 19 | elif isinstance(x, list) or isinstance(x, tuple): 20 | if not( (isinstance(y, list) or isinstance(y, tuple)) and len(x) == len(y)): 21 | print(f"At path {path}, obj1 is an array and obj2 is either not an array or has different length") 22 | return False 23 | 24 | for i in range(len(x)): 25 | if not almost_equal_helper(x[i], y[i], path): 26 | return False 27 | 28 | else: 29 | if not x == y: 30 | print(f"{x} != {y} at path {path}") 31 | return False 32 | 33 | return True 34 | 35 | return almost_equal_helper(obj1, obj2, []) 36 | -------------------------------------------------------------------------------- /test/test_files/test_basic/test_basic_body.py: -------------------------------------------------------------------------------- 1 | print("Hello world") 2 | var = 1 3 | print(var) 4 | -------------------------------------------------------------------------------- /test/test_files/test_basic/test_basic_function.py: -------------------------------------------------------------------------------- 1 | def foo(arg1, arg2): 2 | print("Hello %s", arg1) 3 | return arg2 4 | 5 | -------------------------------------------------------------------------------- /test/test_files/test_basic/test_basic_function_return.py: -------------------------------------------------------------------------------- 1 | import sys 2 | 3 | variable_a=1 4 | 5 | def foo(arg1, arg2): 6 | print("Hello %s", arg1) 7 | return arg2 8 | 9 | def foo2(arg1, arg2): 10 | print("Hello %s", arg1) 11 | return {'name': arg1} 12 | 13 | def foo3(arg1, arg2): 14 | print("Hello %s", arg1) 15 | return str(arg2) 16 | 17 | def foo4(arg1, arg2): 18 | a=[1,2,3] 19 | return a 20 | 21 | def foo5(arg1, arg2): 22 | a={} 23 | a['name']= arg1 24 | return a 25 | 26 | def foo6(arg1, arg2): 27 | return [0,2,3] 28 | 29 | def foo7(arg1, arg2): 30 | a=3 31 | b=4 32 | return a,b 33 | 34 | def foo8(arg1, arg2): 35 | a=3 36 | return a,5 37 | 38 | def foo9(arg1, arg2): 39 | a=3 40 | return a,[0,1,2] 41 | 42 | def foo10(arg1, arg2): 43 | return 5 44 | 45 | 46 | def foo11(arg1, arg2): 47 | #last test 48 | a=3 49 | b=[0,1,2] 50 | return a,b 51 | -------------------------------------------------------------------------------- /test/test_files/test_basic/test_basic_method.py: -------------------------------------------------------------------------------- 1 | class Foo: 2 | def __init__(self, arg): 3 | self.arg = arg 4 | print("Hello %s" % self.arg) 5 | -------------------------------------------------------------------------------- /test/test_files/test_data_flow.py: -------------------------------------------------------------------------------- 1 | def max(a, b): 2 | x = 0 3 | if a > b: 4 | x = a 5 | else: 6 | x = b 7 | return x 8 | 9 | -------------------------------------------------------------------------------- /test/test_files/test_docstring_parser/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/test_docstring_parser/__init__.py -------------------------------------------------------------------------------- /test/test_files/test_docstring_parser/google_docstring_test.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | 3 | from docstring_parser import parse 4 | docstring = parse( 5 | """Return random numbers between a and b. 6 | 7 | Args: 8 | a (float): Lower bound 9 | b (float): Upper bound 10 | size (int): size 11 | 12 | Returns: 13 | list : list of float 14 | 15 | """) 16 | 17 | print(docstring.params[0].arg_name) 18 | print(docstring.params[0].type_name) 19 | 20 | 21 | -------------------------------------------------------------------------------- /test/test_files/test_docstring_parser/numpy_docstring_test.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | 3 | from docstring_parser import parse 4 | docstring = parse( 5 | """Return random numbers between a and b. 6 | 7 | Parameters 8 | ---------- 9 | a : float 10 | Lower bound. 11 | b : float 12 | Upper bound. 13 | size : int, optional 14 | Number of numbers to return. Defaults to 1. 15 | 16 | Returns 17 | ------- 18 | ns : list of float 19 | """) 20 | 21 | print(docstring.params[0].arg_name) 22 | print(docstring.params[0].type_name) 23 | 24 | 25 | -------------------------------------------------------------------------------- /test/test_files/test_docstring_parser/sphinx_docstring_test.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | 3 | from docstring_parser import parse 4 | docstring = parse( 5 | """Return random numbers between a and b. 6 | 7 | :param float a : Lower bound 8 | :param float b : Upper bound 9 | :param int size: size 10 | :raises ValueError: exc desc 11 | :return list : list of float 12 | 13 | """) 14 | 15 | print(docstring.params[0].arg_name) 16 | print(docstring.params[0].type_name) 17 | print(docstring.returns.type_name) 18 | print(docstring.returns.description) 19 | print(docstring.raises[0].type_name) 20 | print(docstring.raises[0].description) 21 | -------------------------------------------------------------------------------- /test/test_files/test_docstring_parser/sphinx_docstring_test_v2.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | 3 | from docstring_parser import parse 4 | docstring = parse( 5 | """Return random numbers between a and b. 6 | 7 | :param a : Lower bound 8 | :type a: float 9 | :param b : Upper bound 10 | :type b: float 11 | :param size: size 12 | :type size: int 13 | :raises ValueError: exc desc 14 | :return: list of float 15 | :rtype: list 16 | 17 | """) 18 | 19 | print(docstring.params[0].arg_name) 20 | print(docstring.params[0].type_name) 21 | print(docstring.returns.type_name) 22 | print(docstring.returns.description) 23 | print(docstring.raises[0].type_name) 24 | print(docstring.raises[0].description) 25 | 26 | 27 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/argument_call.py: -------------------------------------------------------------------------------- 1 | class MyClass: 2 | def func_b(self): 3 | return 3 4 | 5 | def func_a(self): 6 | print(func_b()) 7 | 8 | 9 | 10 | def func_1(): 11 | print(func_2()) 12 | return 1 13 | 14 | def func_2(): 15 | return 2 16 | 17 | print(func_1()) 18 | MyClass().func_a() 19 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic.py: -------------------------------------------------------------------------------- 1 | def func_1(): 2 | return "1" 3 | 4 | def func_2(func): 5 | return func() 6 | 7 | 8 | a=func_2(func_1) 9 | print(a) 10 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_class_import.py: -------------------------------------------------------------------------------- 1 | import test_dynamic_func 2 | 3 | class MyClass: 4 | def func_3(self, func): 5 | return func() 6 | 7 | a=MyClass() 8 | a.func_3(test_dynamic_func.func_1) 9 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_from_import.py: -------------------------------------------------------------------------------- 1 | from test_dynamic_func import func_1 2 | 3 | def func_3(func): 4 | return func() 5 | 6 | 7 | a=func_3(func_1) 8 | print(a) 9 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_from_import_alias.py: -------------------------------------------------------------------------------- 1 | from test_dynamic_func import func_1 as rosa 2 | 3 | def func_3(func): 4 | return func() 5 | 6 | 7 | a=func_3(rosa) 8 | print(a) 9 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_from_import_start.py: -------------------------------------------------------------------------------- 1 | from test_dynamic_func import * 2 | 3 | def func_3(func): 4 | return func() 5 | 6 | 7 | a=func_3(func_1) 8 | print(a) 9 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_func.py: -------------------------------------------------------------------------------- 1 | def func_1(): 2 | return "1" 3 | 4 | def func_2(func): 5 | return func() 6 | 7 | 8 | def main(): 9 | a=func_2(func_1) 10 | print(a) 11 | 12 | if __name__ == '__main__': 13 | main() 14 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_func_from_import_start.py: -------------------------------------------------------------------------------- 1 | from test_dynamic_func import * 2 | 3 | def func_3(func): 4 | return func() 5 | 6 | def main(): 7 | a=func_3(func_1) 8 | print(a) 9 | 10 | if __name__ == '__main__': 11 | main() 12 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_import.py: -------------------------------------------------------------------------------- 1 | import test_dynamic_func 2 | 3 | def func_3(func): 4 | return func() 5 | 6 | 7 | a=func_3(test_dynamic_func.func_1) 8 | print(a) 9 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_import_alias.py: -------------------------------------------------------------------------------- 1 | import test_dynamic_func as td 2 | 3 | def func_3(func): 4 | return func() 5 | 6 | 7 | a=func_3(td.func_1) 8 | print(a) 9 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_method.py: -------------------------------------------------------------------------------- 1 | class MyClass: 2 | def func_1(self): 3 | return "1" 4 | 5 | def func_2(func): 6 | return func() 7 | 8 | 9 | def main(): 10 | a=func_2(MyClass().func_1) 11 | print(a) 12 | 13 | if __name__ == '__main__': 14 | main() 15 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_method_variable.py: -------------------------------------------------------------------------------- 1 | class MyClass: 2 | def func_1(self): 3 | return "1" 4 | 5 | def func_2(func): 6 | return func() 7 | 8 | 9 | def main(): 10 | myclass=MyClass() 11 | a=func_2(myclass.func_1) 12 | print(a) 13 | 14 | if __name__ == '__main__': 15 | main() 16 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_dynamic_method_variable_body.py: -------------------------------------------------------------------------------- 1 | class MyClass: 2 | def func_1(self): 3 | return "1" 4 | 5 | def func_2(func): 6 | return func() 7 | 8 | 9 | myclass=MyClass() 10 | a=func_2(myclass.func_1) 11 | print(a) 12 | 13 | -------------------------------------------------------------------------------- /test/test_files/test_dynamic/test_pycg_paper.py: -------------------------------------------------------------------------------- 1 | import cryptops 2 | 3 | class Crypto: 4 | def __init__(self, key): 5 | self.key = key 6 | 7 | def apply(self, msg, func): 8 | return func(self.key, msg) 9 | 10 | def test(): 11 | crp = Crypto("secretkey") 12 | encrypted = crp.apply("hello world",cryptops.encrypt) 13 | decrypted = crp.apply(encrypted, cryptops.decrypt) 14 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/test_inheritance/__init__.py -------------------------------------------------------------------------------- /test/test_files/test_inheritance/nested_call.py: -------------------------------------------------------------------------------- 1 | class MyClass: 2 | def func(self): 3 | def nested(): 4 | print("nested") 5 | 6 | nested() 7 | 8 | def test(): 9 | a = MyClass() 10 | a.func() 11 | 12 | test() 13 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/super_nested_call.py: -------------------------------------------------------------------------------- 1 | class MyClass: 2 | def func_a(self): 3 | print("nested func a") 4 | def func_b(): 5 | print("nested func b") 6 | def func_c(): 7 | print("nested func c") 8 | func_c() 9 | 10 | func_b() 11 | 12 | 13 | def func_d(): 14 | def func_e(): 15 | print("nested func e") 16 | func_e() 17 | 18 | def main(): 19 | a = MyClass() 20 | a.func_a() 21 | func_d() 22 | 23 | 24 | if __name__ == "__main__": 25 | main() 26 | 27 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/super_test.py: -------------------------------------------------------------------------------- 1 | class Rectangle: 2 | def __init__(self, length, width): 3 | self.length = length 4 | self.width = width 5 | 6 | def area(self): 7 | return self.length * self.width 8 | 9 | def perimeter(self): 10 | return 2 * self.length + 2 * self.width 11 | 12 | # Here we declare that the Square class inherits from the Rectangle class 13 | class Square(Rectangle): 14 | def __init__(self, length): 15 | super().__init__(length, length) 16 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/super_test_2.py: -------------------------------------------------------------------------------- 1 | class Rectangle: 2 | def __init__(self, length, width): 3 | self.length = length 4 | self.width = width 5 | 6 | def area(self): 7 | return self.length * self.width 8 | 9 | def perimeter(self): 10 | return 2 * self.length + 2 * self.width 11 | 12 | # Here we declare that the Square class inherits from the Rectangle class 13 | class Square(Rectangle): 14 | def __init__(self, length): 15 | super().__init__(length, length) 16 | 17 | class Cube(Square): 18 | def surface_area(self): 19 | face_area = super().area() 20 | return face_area * 6 21 | 22 | def volume(self): 23 | face_area = super().area() 24 | return face_area * self.length 25 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/super_test_3.py: -------------------------------------------------------------------------------- 1 | class Rectangle: 2 | def __init__(self, length, width): 3 | self.length = length 4 | self.width = width 5 | 6 | def area(self): 7 | return self.length * self.width 8 | 9 | def perimeter(self): 10 | return 2 * self.length + 2 * self.width 11 | 12 | class Square(Rectangle): 13 | def __init__(self, length): 14 | super(Square, self).__init__(length, length) 15 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/super_test_4.py: -------------------------------------------------------------------------------- 1 | class Rectangle: 2 | def __init__(self, length, width): 3 | self.length = length 4 | self.width = width 5 | 6 | def area(self): 7 | return self.length * self.width 8 | 9 | def perimeter(self): 10 | return 2 * self.length + 2 * self.width 11 | 12 | # Here we declare that the Square class inherits from the Rectangle class 13 | class Square(Rectangle): 14 | def __init__(self, length): 15 | super().__init__(length, length) 16 | 17 | class Cube(Square): 18 | def surface_area(self): 19 | face_area = super().area() 20 | return face_area * 6 21 | 22 | def volume(self): 23 | face_area = super().area() 24 | return face_area * self.length 25 | class Triangle: 26 | def __init__(self, base, height): 27 | self.base = base 28 | self.height = height 29 | 30 | def area(self): 31 | return 0.5 * self.base * self.height 32 | 33 | class RightPyramid(Square, Triangle): 34 | def __init__(self, base, slant_height): 35 | self.base = base 36 | self.slant_height = slant_height 37 | 38 | def area(self): 39 | base_area = super().area() 40 | perimeter = super().perimeter() 41 | return 0.5 * perimeter * self.slant_height + base_area 42 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/super_test_5.py: -------------------------------------------------------------------------------- 1 | class Rectangle: 2 | def __init__(self, length, width): 3 | self.length = length 4 | self.width = width 5 | 6 | def area(self): 7 | return self.length * self.width 8 | 9 | class Square(Rectangle): 10 | def __init__(self, length): 11 | super().__init__(length, length) 12 | 13 | class VolumeMixin: 14 | def volume(self): 15 | return self.area() * self.height 16 | 17 | class Cube(VolumeMixin, Square): 18 | def __init__(self, length): 19 | super().__init__(length) 20 | self.height = length 21 | 22 | def face_area(self): 23 | return super().area() 24 | 25 | def surface_area(self): 26 | return super().area() * 6 27 | 28 | cube = Cube(2) 29 | cube.surface_area() 30 | cube.volume() 31 | 32 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/test_classes.py: -------------------------------------------------------------------------------- 1 | class MyClass_A: 2 | def __init__(self): 3 | print("Class A") 4 | 5 | class MyClass_B: 6 | def __init__(self): 7 | print("Class B") 8 | 9 | 10 | class MyClass_C: 11 | def __init__(self): 12 | print("Class C") 13 | 14 | 15 | a=MyClass_A() 16 | b=MyClass_B() 17 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/test_functions.py: -------------------------------------------------------------------------------- 1 | def funct_A(): 2 | print("Function A") 3 | 4 | def funct_B(): 5 | print("Function B") 6 | 7 | def funct_C(): 8 | print("Function C") 9 | 10 | 11 | funct_A() 12 | funct_B() 13 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/test_import.py: -------------------------------------------------------------------------------- 1 | from .test_classes import * 2 | from .test_functions import * 3 | 4 | class MyClass_D: 5 | def __init__(self): 6 | print("Class D") 7 | funct_C() 8 | funct_D() 9 | MyClass_E() 10 | 11 | class MyClass_E: 12 | def __init__(self): 13 | print("Class E") 14 | MyClass_B() 15 | 16 | def funct_D(): 17 | print("Function D") 18 | a=MyClass_A() 19 | MyClass_E() 20 | funct_A() 21 | 22 | MyClass_A() 23 | b1=MyClass_B() 24 | d= MyClass_D() 25 | funct_A() 26 | funct_D() 27 | MyClass_C() 28 | c=funct_D() 29 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/test_pycg_paper_2.py: -------------------------------------------------------------------------------- 1 | class A: 2 | def func(): 3 | pass 4 | 5 | class B: 6 | def func(): 7 | pass 8 | 9 | class C(B, A): 10 | pass 11 | 12 | c = C() 13 | c.func() 14 | -------------------------------------------------------------------------------- /test/test_files/test_inheritance/test_self_variable.py: -------------------------------------------------------------------------------- 1 | class MyClass: 2 | def func1(self): 3 | pass 4 | 5 | def func2(self): 6 | a = self 7 | a.func1() 8 | 9 | a = MyClass() 10 | a.func2() 11 | -------------------------------------------------------------------------------- /test/test_files/test_license_extraction/LICENSE: -------------------------------------------------------------------------------- 1 | A random license. -------------------------------------------------------------------------------- /test/test_files/test_multiple_mains/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/test_multiple_mains/__init__.py -------------------------------------------------------------------------------- /test/test_files/test_multiple_mains/bar.py: -------------------------------------------------------------------------------- 1 | #bar.py 2 | 3 | def test(): 4 | print("I am in bar.test") 5 | 6 | 7 | if __name__ == '__main__': 8 | test() 9 | -------------------------------------------------------------------------------- /test/test_files/test_multiple_mains/foo.py: -------------------------------------------------------------------------------- 1 | # foo.py 2 | import bar 3 | 4 | def test(): 5 | print("I am in foo.py - going to call bar.test") 6 | bar.test() 7 | -------------------------------------------------------------------------------- /test/test_files/test_multiple_mains/lalo.py: -------------------------------------------------------------------------------- 1 | #lalo.py 2 | 3 | def lalo(): 4 | print("I am in lalo.lalo") 5 | 6 | 7 | if __name__ == '__main__': 8 | lalo() 9 | -------------------------------------------------------------------------------- /test/test_files/test_multiple_mains/test.py: -------------------------------------------------------------------------------- 1 | # test.py 2 | import bar # use an absolute import 3 | import foo 4 | import lalo 5 | def test(): 6 | print("I am in test.py") 7 | bar.test() 8 | foo.test() 9 | lalo.lalo() 10 | def pp(): 11 | print("pp") 12 | pp() 13 | 14 | if __name__ == '__main__': 15 | test() 16 | -------------------------------------------------------------------------------- /test/test_files/test_multiple_mains_indirect/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/test_multiple_mains_indirect/__init__.py -------------------------------------------------------------------------------- /test/test_files/test_multiple_mains_indirect/bar.py: -------------------------------------------------------------------------------- 1 | #bar.py 2 | 3 | def test(): 4 | print("I am in bar.test") 5 | 6 | 7 | if __name__ == '__main__': 8 | test() 9 | -------------------------------------------------------------------------------- /test/test_files/test_multiple_mains_indirect/foo.py: -------------------------------------------------------------------------------- 1 | # foo.py 2 | import bar 3 | 4 | def test(): 5 | print("I am in foo.py - going to call bar.test") 6 | bar.test() 7 | -------------------------------------------------------------------------------- /test/test_files/test_multiple_mains_indirect/test.py: -------------------------------------------------------------------------------- 1 | # test.py 2 | import foo 3 | 4 | def test(): 5 | print("I am in test.py") 6 | foo.test() 7 | def pp(): 8 | print("pp") 9 | pp() 10 | 11 | if __name__ == '__main__': 12 | test() 13 | -------------------------------------------------------------------------------- /test/test_files/test_no_main/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SoftwareUnderstanding/inspect4py/585ceaace3a5889110150dec1144c4a1165ac025/test/test_files/test_no_main/__init__.py -------------------------------------------------------------------------------- /test/test_files/test_no_main/foo.py: -------------------------------------------------------------------------------- 1 | def hello(name): 2 | print("Hello %s" %name) 3 | 4 | hello("Rosa!") 5 | -------------------------------------------------------------------------------- /test/test_files/test_random.py: -------------------------------------------------------------------------------- 1 | # seed the pseudorandom number generator 2 | from random import seed 3 | from random import random 4 | # seed random number generator 5 | seed(1) 6 | # generate some random numbers 7 | print(random(), random(), random()) 8 | # reset the seed 9 | seed(1) 10 | # generate some random numbers 11 | print(random(), random(), random()) 12 | -------------------------------------------------------------------------------- /test/test_files/test_readme/README.md: -------------------------------------------------------------------------------- 1 | README.md in root dir 2 | -------------------------------------------------------------------------------- /test/test_files/test_readme/subdir/README.txt: -------------------------------------------------------------------------------- 1 | README.txt in subdir 2 | -------------------------------------------------------------------------------- /test/test_files/test_readme/subdir/subsubdir/README.rst: -------------------------------------------------------------------------------- 1 | README.rst in subsubdir 2 | -------------------------------------------------------------------------------- /test/test_utils.py: -------------------------------------------------------------------------------- 1 | import unittest 2 | from inspect4py.utils import * 3 | 4 | 5 | class Test(unittest.TestCase): 6 | def test_extract_software_type(self): 7 | json_test = [ 8 | {"type": "service", "run": "python /GitHub/test_repos/Chowlk/app.py"}, 9 | {"type": "script with main", "run": "python /GitHub/test_repos/Chowlk/converter.py"} 10 | ] 11 | type_script = rank_software_invocation(json_test) 12 | assert (type_script[0]["type"] == "service") 13 | 14 | def test_extract_software_type_empty(self): 15 | json = [] 16 | type_script = rank_software_invocation(json) 17 | assert (type_script == []) 18 | 19 | 20 | if __name__ == '__main__': 21 | unittest.main() --------------------------------------------------------------------------------