├── .github └── workflows │ └── publish.yml ├── .gitignore ├── .idea ├── PyRice.iml ├── modules.xml └── vcs.xml ├── Demo_PyRice.ipynb ├── LICENSE.txt ├── MANIFEST.in ├── README.md ├── docs ├── .DS_Store ├── Makefile └── source │ ├── .DS_Store │ ├── conf.py │ ├── images │ ├── html.png │ └── html_detail.png │ ├── index.rst │ ├── install.rst │ ├── pyrice_database.rst │ ├── pyrice_instruction.rst │ ├── pyrice_module.rst │ └── pyrice_result.rst ├── pyrice ├── .DS_Store ├── __init__.py ├── __init__.pyc ├── __pycache__ │ ├── __init__.cpython-36.pyc │ ├── build_dictionary.cpython-36.pyc │ ├── main.cpython-36.pyc │ ├── multi_query.cpython-36.pyc │ └── utils.cpython-36.pyc ├── build_dictionary.py ├── database_description.xml ├── main.py ├── multi_query.py ├── multi_query.pyc ├── support │ ├── .DS_Store │ ├── download │ │ └── download_history.log │ ├── gwas_atlas.json │ ├── id_dict.pkl │ ├── iric_dict.pkl │ ├── loc_dict.pkl │ ├── oryzabase.pkl │ └── rapdb.pkl └── utils.py ├── requirements.txt └── 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