├── .gitignore ├── LICENSE ├── README.md ├── assets └── chexagent_intro.gif ├── data_chexinstruct ├── compile_chexinstruct.py ├── dataset_processors │ ├── __init__.py │ ├── base_processor.py │ ├── bimcv_covid19.py │ ├── brax.py │ ├── candid.py │ ├── chestxray14.py │ ├── chexpert_public.py │ ├── covidx_cxr_3.py │ ├── cxr_lt.py │ ├── medvqa_2019.py │ ├── mimic_cxr.py │ ├── mimic_cxr_struct.py │ ├── mimic_cxr_vqa.py │ ├── mimic_diff_vqa.py │ ├── mimic_iii.py │ ├── mimic_nle.py │ ├── ms_cxr.py │ ├── ms_cxr_t.py │ ├── nlm_tb.py │ ├── object_cxr.py │ ├── openi.py │ ├── padchest.py │ ├── pmc_vqa.py │ ├── rad_restruct.py │ ├── radgraph.py │ ├── radnli.py │ ├── radqa.py │ ├── rexval.py │ ├── roco.py │ ├── rsna.py │ ├── siim.py │ ├── slake.py │ ├── templates.py │ ├── utils.py │ ├── vindr_cxr.py │ ├── vindr_pcxr.py │ └── vqa_rad.py └── dataset_visualizer.py ├── demos ├── app_demo.py ├── run_examples.py └── run_examples_old.py ├── evaluation_chexbench ├── axis_1_image_perception │ ├── run_generation.py │ └── run_likelihood.py ├── axis_2_image_text_reasoning │ ├── run_generation.py │ ├── run_likelihood.py │ └── run_phrase_grounding.py ├── axis_3_text_generation │ ├── run_findings_generation.py │ └── run_findings_summarization.py └── models │ ├── __init__.py │ ├── baseLM.py │ ├── blip2.py │ ├── chexagent.py │ ├── gpt4v.py │ ├── instructblip.py │ ├── llavamed.py │ ├── medflamingo.py │ ├── qwenvl.py │ ├── radfm.py │ ├── random.py │ ├── src │ ├── __init__.py │ ├── llava.py │ ├── radfm │ │ ├── Language_files │ │ │ ├── config.json │ │ │ ├── special_tokens_map.json │ │ │ ├── tokenizer.model │ │ │ └── tokenizer_config.json │ │ ├── MedKEBERT │ │ │ ├── config.json │ │ │ ├── special_tokens_map.json │ │ │ ├── tokenizer.json │ │ │ ├── tokenizer_config.json │ │ │ └── vocab.txt │ │ ├── Model │ │ │ ├── RadFM │ │ │ │ ├── __init__.py │ │ │ │ ├── blocks.py │ │ │ │ ├── helpers.py │ │ │ │ ├── multimodality_model.py │ │ │ │ ├── my_embedding_layer.py │ │ │ │ ├── position_encoding.py │ │ │ │ ├── transformer_decoder.py │ │ │ │ ├── utils.py │ │ │ │ └── vit_3d.py │ │ │ └── __init__.py │ │ └── __init__.py │ └── xraygpt │ │ ├── common │ │ ├── dist_utils.py │ │ └── utils.py │ │ ├── models │ │ ├── Qformer.py │ │ ├── base_model.py │ │ ├── blip2.py │ │ ├── eva_vit.py │ │ ├── mini_gpt4.py │ │ └── modeling_llama.py │ │ └── processors │ │ ├── base_processor.py │ │ └── blip_processors.py │ └── xraygpt.py ├── model_chexagent └── chexagent.py └── reader_study ├── README.md ├── app.py ├── cors.json ├── data └── 99.csv └── readers.yaml /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Stanford-AIMI/CheXagent/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Stanford-AIMI/CheXagent/HEAD/LICENSE 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