├── .github └── workflows │ └── format.yml ├── .gitignore ├── Dockerfile ├── LICENSE ├── README.md ├── bin ├── C2C ├── C2C-slurm └── install.sh ├── comp2comp ├── __init__.py ├── aaa │ └── aaa.py ├── aortic_calcium │ ├── aortic_calcium.py │ ├── aortic_calcium_visualization.py │ └── visualization_utils.py ├── contrast_phase │ ├── contrast_inf.py │ ├── contrast_phase.py │ └── xgboost.pkl ├── hip │ ├── hip.py │ ├── hip_utils.py │ ├── hip_visualization.py │ └── tunnelvision.ipynb ├── inference_class_base.py ├── inference_pipeline.py ├── io │ ├── io.py │ └── io_utils.py ├── liver_spleen_pancreas │ ├── liver_spleen_pancreas.py │ ├── liver_spleen_pancreas_visualization.py │ └── visualization_utils.py ├── metrics │ └── metrics.py ├── models │ └── models.py ├── muscle_adipose_tissue │ ├── data.py │ ├── muscle_adipose_tissue.py │ └── muscle_adipose_tissue_visualization.py ├── spine │ ├── spine.py │ ├── spine_utils.py │ └── spine_visualization.py ├── utils │ ├── __init__.py │ ├── colormap.py │ ├── dl_utils.py │ ├── env.py │ ├── logger.py │ ├── orientation.py │ ├── process.py │ └── run.py └── visualization │ ├── detectron_visualizer.py │ ├── dicom.py │ └── linear_planar_reformation.py ├── docs ├── Local Implementation @ M1 arm64 Silicon.md ├── Makefile ├── make.bat ├── requirements.txt └── source │ ├── conf.py │ └── index.rst ├── figures ├── aaa_diameter_graph.png ├── aaa_segmentation_video.gif ├── aortic_aneurysm_example.png ├── aortic_calcium_overview.png ├── hip_example.png ├── liver_spleen_pancreas_example.png ├── muscle_adipose_tissue_example.png ├── spine_example.png └── spine_muscle_adipose_tissue_example.png ├── logo.png ├── pyproject.toml ├── setup.cfg └── setup.py /.github/workflows/format.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StanfordMIMI/Comp2Comp/HEAD/.github/workflows/format.yml -------------------------------------------------------------------------------- /.gitignore: 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