├── .github └── workflows │ └── ruff.yml ├── .gitignore ├── .pre-commit-config.yaml ├── LICENSE ├── README.md ├── documentation ├── assets │ └── overview.png ├── demo.py ├── download.md ├── inference.md ├── phenotypes.csv ├── report_generation.md └── report_generation_demo.py ├── merlin ├── __init__.py ├── data │ ├── __init__.py │ ├── dataloaders.py │ ├── download_data.py │ └── monai_transforms.py ├── models │ ├── __init__.py │ ├── build.py │ ├── i3res.py │ ├── inflate.py │ ├── load.py │ └── radiology_report_generation.py └── utils │ ├── __init__.py │ └── huggingface_download.py ├── pyproject.toml └── uv.lock /.github/workflows/ruff.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StanfordMIMI/Merlin/HEAD/.github/workflows/ruff.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 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