├── .gitignore ├── .readthedocs.yml ├── 0_CellChatDB ├── 1_human │ ├── complex_input_CellChatDB.csv │ └── interaction_input_CellChatDB.csv └── 2_mouse │ ├── complex_input_CellChatDB.csv │ └── interaction_input_CellChatDB.csv ├── LICENSE ├── README.rst ├── docs ├── .figs │ ├── AvsB-1.png │ ├── SPP1_CD44.png │ ├── global_plot.png │ └── runtime_aug16-1.png ├── Makefile ├── api.rst ├── autosummary │ ├── base.rst │ └── class.rst ├── conf.py ├── custom.css ├── index.rst ├── install.rst ├── release.rst └── requirements.txt ├── requirements.txt ├── setup.py ├── spatialdm ├── __init__.py ├── datasets │ ├── LR_data │ │ ├── human-complex_input_CellChatDB.csv │ │ ├── human-interaction_input_CellChatDB.csv.gz │ │ ├── mouse-complex_input_CellChatDB.csv │ │ ├── mouse-interaction_input_CellChatDB.csv.gz │ │ ├── zerafish-complex_input_CellChatDB.csv │ │ └── zerafish-interaction_input_CellChatDB.csv.gz │ ├── __init__.py │ ├── _util_dataset.py │ └── dataset.py ├── diff_utils.py ├── main.py ├── plottings.py ├── stats.py ├── utils.py └── version.py └── tutorial ├── differential_test_intestine.ipynb ├── melanoma.ipynb ├── misc_notes.ipynb └── simulation ├── ligand_recptor_pairs_sim.csv ├── pos.txt └── simulation_code.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StatBiomed/SpatialDM/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StatBiomed/SpatialDM/HEAD/.readthedocs.yml -------------------------------------------------------------------------------- /0_CellChatDB/1_human/complex_input_CellChatDB.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StatBiomed/SpatialDM/HEAD/0_CellChatDB/1_human/complex_input_CellChatDB.csv 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