├── .DS_Store ├── .gitignore ├── LICENSE.txt ├── README.md ├── Tutorial1 ├── .DS_Store ├── Data │ ├── dataM1000d2.5.dat │ ├── dataM100d2.5.dat │ └── dataM10d2.5.dat ├── Solution │ ├── .DS_Store │ ├── trajectory_dataM1000d2_5.pdf │ └── tutorial1.ipynb └── tutorial1_start.ipynb ├── Tutorial2 ├── .DS_Store ├── Data │ ├── .DS_Store │ └── dati2-berry.dat ├── Solution │ ├── .DS_Store │ └── tutorial2.ipynb └── tutorial2_start.ipynb ├── Tutorial3 ├── .DS_Store ├── Data │ ├── Dati_181014_maze.txt │ ├── Dati_181014_sleep1.txt │ ├── Dati_181014_sleep2.txt │ └── tut3_start.ipynb ├── Solution │ └── tutorial3.ipynb └── tutorial3_start.ipynb ├── Tutorial4 ├── .DS_Store ├── Data │ ├── dataNe2Nt5-nooverlap.dat │ ├── dataNe2Nt5.dat │ ├── td4_start.ipynb │ └── transcriptscpnbNe2Nt5.dat ├── Solution │ └── tutorial4.ipynb └── tutorial4_start.ipynb ├── Tutorial5 ├── .DS_Store ├── Data │ ├── backmap_distances_e_PF00014.txt │ ├── seqPF14.txt │ └── td5_start.ipynb ├── Solution │ └── tutorial5.ipynb └── tutorial5_start.ipynb ├── Tutorial6 ├── .DS_Store ├── Data │ ├── Dati_181014_maze.txt │ └── tut6_start.ipynb ├── Solution │ └── tutorial6.ipynb └── tutorial6_start.ipynb ├── Tutorial7 ├── .DS_Store ├── Data │ ├── fp_interaction_matrix.xlsx │ ├── peptides.free │ └── tut7_start.ipynb ├── Solution │ ├── J.pdf │ ├── Jkeras.pdf │ ├── Jlasso.pdf │ ├── stability.pdf │ └── tutorial7.ipynb └── tutorial7_start.ipynb └── Tutorial8 ├── .DS_Store ├── Data ├── lambdaphage.txt └── tut8_start.ipynb ├── Solution └── tutorial8.ipynb └── tutorial8_start.ipynb /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StatPhys2DataDrivenModel/DDM_Book_Tutorials/HEAD/.DS_Store -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 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