├── .gitignore ├── README.md ├── active_loss ├── ensemble_lidc_random_10.pt ├── softm_lidc_output_uncertainty_10.pt ├── softm_lidc_output_uncertainty_100.pt ├── softm_lidc_output_uncertainty_20.pt ├── softm_lidc_output_uncertainty_30.pt ├── softm_lidc_output_uncertainty_40.pt ├── softm_lidc_output_uncertainty_50.pt ├── softm_lidc_output_uncertainty_60.pt ├── softm_lidc_output_uncertainty_70.pt ├── softm_lidc_output_uncertainty_80.pt ├── softm_lidc_output_uncertainty_90.pt ├── softm_lidc_random_10.pt ├── softm_lidc_random_100.pt ├── softm_lidc_random_20.pt ├── softm_lidc_random_30.pt ├── softm_lidc_random_40.pt ├── softm_lidc_random_50.pt ├── softm_lidc_random_60.pt ├── softm_lidc_random_70.pt ├── softm_lidc_random_80.pt └── softm_lidc_random_90.pt ├── data ├── isic18 │ ├── .gitignore │ └── download.py └── lidc │ ├── .gitignore │ └── download.py ├── plots ├── active_ensemble_lidc.pdf ├── active_mcdropout_lidc.pdf ├── active_softm_lidc.pdf ├── isic18_predictions.png ├── isic18_samples.pdf ├── isic18_samples.png ├── isic18_segerr_uncert_correlation.pdf ├── isic18_segerr_uncert_correlation.png ├── isic18_uncertainty_by_condition.pdf ├── isic18_uncertainty_by_condition.png ├── lidc_ged.pdf ├── lidc_ged.png ├── lidc_predictions.png ├── lidc_samples.png ├── lidc_segerr_uncert_correlation.pdf ├── lidc_segerr_uncert_correlation_.png ├── lidc_soft_dice.pdf ├── lidc_soft_dice.png ├── lidc_uncertainty_by_condition.pdf ├── lidc_uncertainty_by_condition.png ├── lidc_uncertainty_correl.pdf ├── lidc_uncertainty_correl.png ├── metrics.csv ├── qualitative_isic_samples.pdf ├── qualitative_isic_samples.png ├── qualitative_lidc_samples.pdf ├── qualitative_lidc_samples.png ├── qualitative_uncertainty.pdf ├── qualitative_uncertainty.png ├── softm_samples_isic.png └── test_results.txt ├── requirements.txt ├── scripts ├── download_data.sh ├── hparam_tune.sh ├── plot.sh ├── run_active.sh ├── set_up_and_install.sh ├── test.sh └── train.sh └── src ├── active_learning.py ├── datamodels ├── addi_datamodule.py ├── augmentation.py ├── isic18_datamodule.py └── lidc_datamodule.py ├── lightning_models ├── ensemble.py ├── mc_dropout.py ├── probabilistic_unet.py └── softmax_output.py ├── metrics ├── correlation.py ├── generalized_energy_distance.py └── soft_dice_loss.py ├── networks ├── mcdropout_unet.py ├── probabilistic_unet.py ├── unet.py └── unet_blocks.py ├── plot ├── correlation.py ├── ged_plot.py ├── isic18_sample_teaser.py ├── metrics_to_csv.py ├── model_vs_annotator_uncertainty.py ├── plot2d.py ├── qualitative_samples.py ├── qualitative_uncertainty.py ├── soft_dice_plot.py ├── tests.py ├── uncertainty_by_condition.py ├── viz_active.py ├── viz_prediction.py └── viz_predictions.py ├── test.py ├── train.py └── util.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SteffenCzolbe/probabilistic_segmentation/HEAD/.gitignore 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