├── .editorconfig ├── .github ├── ISSUE_TEMPLATE.md └── workflows │ └── python-publish.yml ├── .gitignore ├── .travis.yml ├── AUTHORS.rst ├── CONTRIBUTING.rst ├── Dockerfile ├── HISTORY.rst ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.rst ├── __init__.py ├── dicom_wsi ├── __init__.py ├── add_annotations.py ├── base_attributes.py ├── character_validations.py ├── cli.py ├── compare_imgs.py ├── dicom_wsi.py ├── extract_annotations.py ├── extract_image_patches.py ├── image_filter.py ├── input_validation.py ├── isyntax │ └── libtiff_interface.py ├── mapping.py ├── parse_wsi.py ├── pixel_data_conversion.py ├── pixel_to_slide_conversions.py ├── run.py ├── sequence_attributes.py ├── shared_functional_groups.py ├── utils.py └── yaml │ ├── annotation.xml │ ├── base.yaml │ ├── google.json │ ├── orthanc.json │ └── pixelmed.json ├── docs ├── Makefile ├── annotations.rst ├── authors.rst ├── code.rst ├── conf.py ├── contributing.rst ├── errors.rst ├── example.rst ├── extract.rst ├── gettingstarted.rst ├── history.rst ├── images │ └── annotation.jpg ├── index.rst ├── installation.rst ├── isyntax.rst ├── make.bat ├── readme.rst ├── tldr.rst └── usage.rst ├── requirements.txt ├── setup.py └── tests ├── CMU-1-JP2K-33005.xml ├── __init__.py ├── base.yaml ├── compare_converters.sh ├── test_base_attributes.py ├── test_build_base.yaml ├── test_character_validations.py ├── test_get_wsi.yaml ├── test_parse_wsi.py ├── test_sequence_attributes.py └── test_shared_functional_groups.py /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Steven-N-Hart/dicom_wsi/HEAD/.editorconfig -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Steven-N-Hart/dicom_wsi/HEAD/.github/ISSUE_TEMPLATE.md 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