├── README.md ├── app.py ├── compute.ipynb ├── demo.ipynb ├── dicom2nii.ipynb ├── generate_json.ipynb ├── inference.ipynb ├── requirements.txt └── train_brain.ipynb /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StevenHaojc/3Dmedical_image_segment_pipline/HEAD/README.md -------------------------------------------------------------------------------- /app.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StevenHaojc/3Dmedical_image_segment_pipline/HEAD/app.py -------------------------------------------------------------------------------- /compute.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StevenHaojc/3Dmedical_image_segment_pipline/HEAD/compute.ipynb -------------------------------------------------------------------------------- /demo.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StevenHaojc/3Dmedical_image_segment_pipline/HEAD/demo.ipynb -------------------------------------------------------------------------------- /dicom2nii.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StevenHaojc/3Dmedical_image_segment_pipline/HEAD/dicom2nii.ipynb -------------------------------------------------------------------------------- /generate_json.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StevenHaojc/3Dmedical_image_segment_pipline/HEAD/generate_json.ipynb -------------------------------------------------------------------------------- /inference.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StevenHaojc/3Dmedical_image_segment_pipline/HEAD/inference.ipynb -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | matplotlib 2 | monai 3 | numpy 4 | torch 5 | gradio 6 | nibabel 7 | SimpleITK -------------------------------------------------------------------------------- /train_brain.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/StevenHaojc/3Dmedical_image_segment_pipline/HEAD/train_brain.ipynb --------------------------------------------------------------------------------