├── .Rbuildignore ├── .gitattributes ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── divergence.R ├── fit_nb.R ├── fit_zinb.R ├── ideas-internal.R ├── ideas_dist.R ├── permanova.R └── permanova_utilities.R ├── README.md ├── data └── sim_data_ncase_10_nctrl_10_ncell_120_fold_mean_1.2_var_1.5.rds ├── images └── workflow.png └── man ├── ideas-package.Rd ├── ideas_dist.Rd └── permanova.Rd /.Rbuildignore: -------------------------------------------------------------------------------- 1 | ^images$ 2 | -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/LICENSE -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/NAMESPACE -------------------------------------------------------------------------------- /R/divergence.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/R/divergence.R -------------------------------------------------------------------------------- /R/fit_nb.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/R/fit_nb.R -------------------------------------------------------------------------------- /R/fit_zinb.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/R/fit_zinb.R -------------------------------------------------------------------------------- /R/ideas-internal.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/R/ideas-internal.R -------------------------------------------------------------------------------- /R/ideas_dist.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/R/ideas_dist.R -------------------------------------------------------------------------------- /R/permanova.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/R/permanova.R -------------------------------------------------------------------------------- /R/permanova_utilities.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/R/permanova_utilities.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/README.md -------------------------------------------------------------------------------- /data/sim_data_ncase_10_nctrl_10_ncell_120_fold_mean_1.2_var_1.5.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/data/sim_data_ncase_10_nctrl_10_ncell_120_fold_mean_1.2_var_1.5.rds -------------------------------------------------------------------------------- /images/workflow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/images/workflow.png -------------------------------------------------------------------------------- /man/ideas-package.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/man/ideas-package.Rd -------------------------------------------------------------------------------- /man/ideas_dist.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/man/ideas_dist.Rd -------------------------------------------------------------------------------- /man/permanova.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Sun-lab/ideas/HEAD/man/permanova.Rd --------------------------------------------------------------------------------