├── .clang-format ├── .editorconfig ├── .github └── workflows │ ├── ElastixGitHubActions.yml │ └── pre-commit.yml ├── .gitignore ├── .gitmodules ├── .pre-commit-config.yaml ├── CMake ├── FindEigen3.cmake ├── FindOpenCL.cmake ├── elastixExportTarget.cmake ├── elastixOpenCL.cmake └── elastixVersion.cmake ├── CMakeLists.txt ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── CTestConfig.cmake ├── Common ├── CMakeLists.txt ├── CostFunctions │ ├── itkAdvancedImageToImageMetric.h │ ├── itkAdvancedImageToImageMetric.hxx │ ├── itkExponentialLimiterFunction.h │ ├── itkExponentialLimiterFunction.hxx │ ├── itkHardLimiterFunction.h │ ├── itkHardLimiterFunction.hxx │ ├── itkImageToImageMetricWithFeatures.h │ ├── itkImageToImageMetricWithFeatures.hxx │ ├── itkLimiterFunctionBase.h │ ├── itkMultiInputImageToImageMetricBase.h │ ├── itkMultiInputImageToImageMetricBase.hxx │ ├── itkParzenWindowHistogramImageToImageMetric.h │ ├── itkParzenWindowHistogramImageToImageMetric.hxx │ ├── itkScaledSingleValuedCostFunction.cxx │ ├── itkScaledSingleValuedCostFunction.h │ ├── itkSingleValuedPointSetToPointSetMetric.h │ ├── itkSingleValuedPointSetToPointSetMetric.hxx │ ├── itkTransformPenaltyTerm.h │ └── itkTransformPenaltyTerm.hxx ├── GTesting │ ├── CMakeLists.txt │ ├── elxConversionGTest.cxx │ ├── elxDefaultConstructGTest.cxx │ ├── elxElastixMainGTest.cxx │ ├── elxGTestUtilities.h │ ├── elxResampleInterpolatorGTest.cxx │ ├── elxResamplerGTest.cxx │ ├── elxTransformIOGTest.cxx │ ├── itkAdvancedImageToImageMetricGTest.cxx │ ├── itkAdvancedMeanSquaresImageToImageMetricGTest.cxx │ ├── itkComputeImageExtremaFilterGTest.cxx │ ├── itkCorrespondingPointsEuclideanDistancePointMetricGTest.cxx │ ├── itkGridScheduleComputerGTest.cxx │ ├── itkImageFileCastWriterGTest.cxx │ ├── itkImageFullSamplerGTest.cxx │ ├── itkImageGridSamplerGTest.cxx │ ├── itkImageRandomCoordinateSamplerGTest.cxx │ ├── itkImageRandomSamplerGTest.cxx │ ├── itkImageRandomSamplerSparseMaskGTest.cxx │ ├── itkImageSamplerGTest.cxx │ └── itkParameterMapInterfaceTest.cxx ├── ImageSamplers │ ├── itkImageFullSampler.h │ ├── itkImageFullSampler.hxx │ ├── itkImageGridSampler.h │ ├── itkImageGridSampler.hxx │ ├── itkImageRandomCoordinateSampler.h │ ├── itkImageRandomCoordinateSampler.hxx │ ├── itkImageRandomSampler.h │ ├── itkImageRandomSampler.hxx │ ├── itkImageRandomSamplerBase.h │ ├── itkImageRandomSamplerBase.hxx │ ├── itkImageRandomSamplerSparseMask.h │ ├── itkImageRandomSamplerSparseMask.hxx │ ├── itkImageSample.h │ ├── itkImageSamplerBase.h │ ├── itkImageSamplerBase.hxx │ ├── itkMultiInputImageRandomCoordinateSampler.h │ ├── itkMultiInputImageRandomCoordinateSampler.hxx │ ├── itkVectorContainerSource.h │ ├── itkVectorContainerSource.hxx │ ├── itkVectorDataContainer.h │ └── itkVectorDataContainer.hxx ├── LineSearchOptimizers │ ├── itkLineSearchOptimizer.cxx │ ├── itkLineSearchOptimizer.h │ ├── itkMoreThuenteLineSearchOptimizer.cxx │ └── itkMoreThuenteLineSearchOptimizer.h ├── MevisDicomTiff │ ├── CMakeLists.txt │ ├── itkMevisDicomTiffImageIO.cxx │ ├── itkMevisDicomTiffImageIO.h │ ├── itkMevisDicomTiffImageIOFactory.cxx │ ├── itkMevisDicomTiffImageIOFactory.h │ ├── itkUseMevisDicomTiff.cxx │ └── itkUseMevisDicomTiff.h ├── OpenCL │ ├── CMakeLists.txt │ ├── Factories │ │ ├── itkGPUAdvancedBSplineDeformableTransformFactory.h │ │ ├── itkGPUAdvancedBSplineDeformableTransformFactory.hxx │ │ ├── itkGPUAdvancedCombinationTransformFactory.h │ │ ├── itkGPUAdvancedCombinationTransformFactory.hxx │ │ ├── itkGPUAdvancedEuler2DTransformFactory.h │ │ ├── itkGPUAdvancedEuler2DTransformFactory.hxx │ │ ├── itkGPUAdvancedEuler3DTransformFactory.h │ │ ├── itkGPUAdvancedEuler3DTransformFactory.hxx │ │ ├── itkGPUAdvancedMatrixOffsetTransformBaseFactory.h │ │ ├── itkGPUAdvancedMatrixOffsetTransformBaseFactory.hxx │ │ ├── itkGPUAdvancedSimilarity2DTransformFactory.h │ │ ├── itkGPUAdvancedSimilarity2DTransformFactory.hxx │ │ ├── itkGPUAdvancedSimilarity3DTransformFactory.h │ │ ├── itkGPUAdvancedSimilarity3DTransformFactory.hxx │ │ ├── itkGPUAdvancedTranslationTransformFactory.h │ │ ├── itkGPUAdvancedTranslationTransformFactory.hxx │ │ ├── itkGPUAffineTransformFactory.h │ │ ├── itkGPUAffineTransformFactory.hxx │ │ ├── itkGPUBSplineDecompositionImageFilterFactory.h │ │ ├── itkGPUBSplineDecompositionImageFilterFactory.hxx │ │ ├── itkGPUBSplineInterpolateImageFunctionFactory.h │ │ ├── itkGPUBSplineInterpolateImageFunctionFactory.hxx │ │ ├── itkGPUBSplineTransformFactory.h │ │ ├── itkGPUBSplineTransformFactory.hxx │ │ ├── itkGPUCastImageFilterFactory.h │ │ ├── itkGPUCastImageFilterFactory.hxx │ │ ├── itkGPUCompositeTransformFactory.h │ │ ├── itkGPUCompositeTransformFactory.hxx │ │ ├── itkGPUEuler2DTransformFactory.h │ │ ├── itkGPUEuler2DTransformFactory.hxx │ │ ├── itkGPUEuler3DTransformFactory.h │ │ ├── itkGPUEuler3DTransformFactory.hxx │ │ ├── itkGPUIdentityTransformFactory.h │ │ ├── itkGPUIdentityTransformFactory.hxx │ │ ├── itkGPUImageFactory.h │ │ ├── itkGPUImageFactory.hxx │ │ ├── itkGPULinearInterpolateImageFunctionFactory.h │ │ ├── itkGPULinearInterpolateImageFunctionFactory.hxx │ │ ├── itkGPUNearestNeighborInterpolateImageFunctionFactory.h │ │ ├── itkGPUNearestNeighborInterpolateImageFunctionFactory.hxx │ │ ├── itkGPUObjectFactoryBase.h │ │ ├── itkGPUObjectFactoryBase.hxx │ │ ├── itkGPURecursiveGaussianImageFilterFactory.h │ │ ├── itkGPURecursiveGaussianImageFilterFactory.hxx │ │ ├── itkGPUResampleImageFilterFactory.h │ │ ├── itkGPUResampleImageFilterFactory.hxx │ │ ├── itkGPUShrinkImageFilterFactory.h │ │ ├── itkGPUShrinkImageFilterFactory.hxx │ │ ├── itkGPUSimilarity2DTransformFactory.h │ │ ├── itkGPUSimilarity2DTransformFactory.hxx │ │ ├── itkGPUSimilarity3DTransformFactory.h │ │ ├── itkGPUSimilarity3DTransformFactory.hxx │ │ ├── itkGPUSupportedImages.h │ │ ├── itkGPUTranslationTransformFactory.h │ │ └── itkGPUTranslationTransformFactory.hxx │ ├── Filters │ │ ├── itkGPUAdvancedBSplineDeformableTransform.h │ │ ├── itkGPUAdvancedBSplineDeformableTransform.hxx │ │ ├── itkGPUAdvancedCombinationTransform.h │ │ ├── itkGPUAdvancedCombinationTransformCopier.h │ │ ├── itkGPUAdvancedCombinationTransformCopier.hxx │ │ ├── itkGPUAdvancedEuler2DTransform.h │ │ ├── itkGPUAdvancedEuler3DTransform.h │ │ ├── itkGPUAdvancedMatrixOffsetTransformBase.h │ │ ├── itkGPUAdvancedSimilarity2DTransform.h │ │ ├── itkGPUAdvancedSimilarity3DTransform.h │ │ ├── itkGPUAdvancedTranslationTransform.h │ │ ├── itkGPUAffineTransform.h │ │ ├── itkGPUBSplineBaseTransform.h │ │ ├── itkGPUBSplineBaseTransform.hxx │ │ ├── itkGPUBSplineDecompositionImageFilter.h │ │ ├── itkGPUBSplineDecompositionImageFilter.hxx │ │ ├── itkGPUBSplineInterpolateImageFunction.h │ │ ├── itkGPUBSplineInterpolateImageFunction.hxx │ │ ├── itkGPUBSplineTransform.h │ │ ├── itkGPUBSplineTransform.hxx │ │ ├── itkGPUCastImageFilter.h │ │ ├── itkGPUCastImageFilter.hxx │ │ ├── itkGPUCompositeTransform.h │ │ ├── itkGPUCompositeTransformBase.h │ │ ├── itkGPUCompositeTransformBase.hxx │ │ ├── itkGPUCompositeTransformCopier.h │ │ ├── itkGPUCompositeTransformCopier.hxx │ │ ├── itkGPUEuler2DTransform.h │ │ ├── itkGPUEuler3DTransform.h │ │ ├── itkGPUIdentityTransform.h │ │ ├── itkGPUIdentityTransform.hxx │ │ ├── itkGPUImageBase.h │ │ ├── itkGPUImageFunction.h │ │ ├── itkGPUInterpolateImageFunction.h │ │ ├── itkGPUInterpolateImageFunction.hxx │ │ ├── itkGPUInterpolatorBase.cxx │ │ ├── itkGPUInterpolatorBase.h │ │ ├── itkGPUInterpolatorCopier.h │ │ ├── itkGPUInterpolatorCopier.hxx │ │ ├── itkGPULinearInterpolateImageFunction.h │ │ ├── itkGPULinearInterpolateImageFunction.hxx │ │ ├── itkGPUMath.h │ │ ├── itkGPUMatrixOffsetTransformBase.h │ │ ├── itkGPUMatrixOffsetTransformBase.hxx │ │ ├── itkGPUNearestNeighborInterpolateImageFunction.h │ │ ├── itkGPUNearestNeighborInterpolateImageFunction.hxx │ │ ├── itkGPURecursiveGaussianImageFilter.h │ │ ├── itkGPURecursiveGaussianImageFilter.hxx │ │ ├── itkGPUResampleImageFilter.h │ │ ├── itkGPUResampleImageFilter.hxx │ │ ├── itkGPUShrinkImageFilter.h │ │ ├── itkGPUShrinkImageFilter.hxx │ │ ├── itkGPUSimilarity2DTransform.h │ │ ├── itkGPUSimilarity3DTransform.h │ │ ├── itkGPUTransformBase.cxx │ │ ├── itkGPUTransformBase.h │ │ ├── itkGPUTransformCopier.h │ │ ├── itkGPUTransformCopier.hxx │ │ ├── itkGPUTranslationTransform.h │ │ ├── itkGPUTranslationTransformBase.h │ │ └── itkGPUTranslationTransformBase.hxx │ ├── ITKimprovements │ │ ├── itkGPUDataManager.cxx │ │ ├── itkGPUDataManager.h │ │ ├── itkGPUFunctorBase.h │ │ ├── itkGPUImage.h │ │ ├── itkGPUImage.hxx │ │ ├── itkGPUImageDataManager.h │ │ ├── itkGPUImageDataManager.hxx │ │ ├── itkGPUImageToImageFilter.h │ │ ├── itkGPUImageToImageFilter.hxx │ │ ├── itkGPUInPlaceImageFilter.h │ │ ├── itkGPUInPlaceImageFilter.hxx │ │ ├── itkGPUUnaryFunctorImageFilter.h │ │ ├── itkGPUUnaryFunctorImageFilter.hxx │ │ ├── itkOpenCL.h │ │ ├── itkOpenCLBuffer.cxx │ │ ├── itkOpenCLBuffer.h │ │ ├── itkOpenCLCommandQueue.cxx │ │ ├── itkOpenCLCommandQueue.h │ │ ├── itkOpenCLContext.cxx │ │ ├── itkOpenCLContext.h │ │ ├── itkOpenCLContextScopeGuard.h │ │ ├── itkOpenCLDevice.cxx │ │ ├── itkOpenCLDevice.h │ │ ├── itkOpenCLEvent.cxx │ │ ├── itkOpenCLEvent.h │ │ ├── itkOpenCLEventList.cxx │ │ ├── itkOpenCLEventList.h │ │ ├── itkOpenCLExport.h │ │ ├── itkOpenCLExtension.h │ │ ├── itkOpenCLGlobal.h │ │ ├── itkOpenCLImage.cxx │ │ ├── itkOpenCLImage.h │ │ ├── itkOpenCLImageFormat.cxx │ │ ├── itkOpenCLImageFormat.h │ │ ├── itkOpenCLKernel.cxx │ │ ├── itkOpenCLKernel.h │ │ ├── itkOpenCLKernelManager.cxx │ │ ├── itkOpenCLKernelManager.h │ │ ├── itkOpenCLKernelToImageBridge.h │ │ ├── itkOpenCLKernelToImageBridge.hxx │ │ ├── itkOpenCLKernels.h.in │ │ ├── itkOpenCLLogger.cxx │ │ ├── itkOpenCLLogger.h │ │ ├── itkOpenCLMacro.h │ │ ├── itkOpenCLMemoryObject.cxx │ │ ├── itkOpenCLMemoryObject.h │ │ ├── itkOpenCLOstreamSupport.h │ │ ├── itkOpenCLPlatform.cxx │ │ ├── itkOpenCLPlatform.h │ │ ├── itkOpenCLProfilingTimeProbe.cxx │ │ ├── itkOpenCLProfilingTimeProbe.h │ │ ├── itkOpenCLProgram.cxx │ │ ├── itkOpenCLProgram.h │ │ ├── itkOpenCLSampler.cxx │ │ ├── itkOpenCLSampler.h │ │ ├── itkOpenCLSize.cxx │ │ ├── itkOpenCLSize.h │ │ ├── itkOpenCLStringUtils.cxx │ │ ├── itkOpenCLStringUtils.h │ │ ├── itkOpenCLUserEvent.cxx │ │ ├── itkOpenCLUserEvent.h │ │ ├── itkOpenCLUtil.cxx │ │ ├── itkOpenCLUtil.h │ │ ├── itkOpenCLVector.h │ │ ├── itkOpenCLVector.hxx │ │ ├── itkOpenCLVectorBase.cxx │ │ └── itkOpenCLVectorBase.h │ ├── Kernels │ │ ├── GPUBSplineDecompositionImageFilter.cl │ │ ├── GPUBSplineInterpolateImageFunction.cl │ │ ├── GPUBSplineTransform.cl │ │ ├── GPUCastImageFilter.cl │ │ ├── GPUIdentityTransform.cl │ │ ├── GPUImageBase.cl │ │ ├── GPUImageFunction.cl │ │ ├── GPULinearInterpolateImageFunction.cl │ │ ├── GPUMath.cl │ │ ├── GPUMatrixOffsetTransformBase.cl │ │ ├── GPUNearestNeighborInterpolateImageFunction.cl │ │ ├── GPURecursiveGaussianImageFilter.cl │ │ ├── GPUResampleImageFilter.cl │ │ ├── GPUShrinkImageFilter.cl │ │ └── GPUTranslationTransformBase.cl │ ├── itkGPUKernelManagerHelperFunctions.h │ ├── itkOpenCLSetup.cxx │ └── itkOpenCLSetup.h ├── ParameterFileParser │ ├── CMakeLists.txt │ ├── itkParameterFileParser.cxx │ ├── itkParameterFileParser.h │ ├── itkParameterMapInterface.cxx │ ├── itkParameterMapInterface.h │ └── tomlplusplus │ │ └── toml.hpp ├── Transforms │ ├── elxTransformFactoryRegistration.cxx │ ├── elxTransformFactoryRegistration.h │ ├── elxTransformIO.cxx │ ├── elxTransformIO.h │ ├── itkAdvancedBSplineDeformableTransform.h │ ├── itkAdvancedBSplineDeformableTransform.hxx │ ├── itkAdvancedBSplineDeformableTransformBase.h │ ├── itkAdvancedBSplineDeformableTransformBase.hxx │ ├── itkAdvancedCombinationTransform.h │ ├── itkAdvancedCombinationTransform.hxx │ ├── itkAdvancedEuler3DTransform.h │ ├── itkAdvancedEuler3DTransform.hxx │ ├── itkAdvancedIdentityTransform.h │ ├── itkAdvancedImageMomentsCalculator.h │ ├── itkAdvancedImageMomentsCalculator.hxx │ ├── itkAdvancedMatrixOffsetTransformBase.h │ ├── itkAdvancedMatrixOffsetTransformBase.hxx │ ├── itkAdvancedRigid2DTransform.h │ ├── itkAdvancedRigid2DTransform.hxx │ ├── itkAdvancedRigid3DTransform.h │ ├── itkAdvancedRigid3DTransform.hxx │ ├── itkAdvancedSimilarity2DTransform.h │ ├── itkAdvancedSimilarity2DTransform.hxx │ ├── itkAdvancedSimilarity3DTransform.h │ ├── itkAdvancedSimilarity3DTransform.hxx │ ├── itkAdvancedTransform.h │ ├── itkAdvancedTransform.hxx │ ├── itkAdvancedTranslationTransform.h │ ├── itkAdvancedTranslationTransform.hxx │ ├── itkAdvancedVersorRigid3DTransform.h │ ├── itkAdvancedVersorRigid3DTransform.hxx │ ├── itkAdvancedVersorTransform.h │ ├── itkAdvancedVersorTransform.hxx │ ├── itkBSplineDerivativeKernelFunction2.h │ ├── itkBSplineInterpolationDerivativeWeightFunction.h │ ├── itkBSplineInterpolationDerivativeWeightFunction.hxx │ ├── itkBSplineInterpolationSecondOrderDerivativeWeightFunction.h │ ├── itkBSplineInterpolationSecondOrderDerivativeWeightFunction.hxx │ ├── itkBSplineInterpolationWeightFunction2.h │ ├── itkBSplineInterpolationWeightFunction2.hxx │ ├── itkBSplineInterpolationWeightFunctionBase.h │ ├── itkBSplineInterpolationWeightFunctionBase.hxx │ ├── itkBSplineKernelFunction2.h │ ├── itkBSplineSecondOrderDerivativeKernelFunction2.h │ ├── itkCyclicBSplineDeformableTransform.h │ ├── itkCyclicBSplineDeformableTransform.hxx │ ├── itkCyclicGridScheduleComputer.h │ ├── itkCyclicGridScheduleComputer.hxx │ ├── itkEulerTransform.h │ ├── itkGridScheduleComputer.h │ ├── itkGridScheduleComputer.hxx │ ├── itkKernelFunctionBase2.h │ ├── itkRecursiveBSplineTransform.h │ ├── itkRecursiveBSplineTransform.hxx │ ├── itkRecursiveBSplineTransformImplementation.h │ ├── itkStackTransform.h │ ├── itkStackTransform.hxx │ ├── itkTransformToDeterminantOfSpatialJacobianSource.h │ ├── itkTransformToDeterminantOfSpatialJacobianSource.hxx │ ├── itkTransformToSpatialJacobianSource.h │ ├── itkTransformToSpatialJacobianSource.hxx │ ├── itkUpsampleBSplineParametersFilter.h │ └── itkUpsampleBSplineParametersFilter.hxx ├── TypeList.h ├── elxDefaultConstruct.h ├── elxMaskHasSameImageDomain.h ├── elxSupportedImageDimensions.h ├── itkAdvancedLinearInterpolateImageFunction.h ├── itkAdvancedLinearInterpolateImageFunction.hxx ├── itkAdvancedRayCastInterpolateImageFunction.h ├── itkAdvancedRayCastInterpolateImageFunction.hxx ├── itkComputeDisplacementDistribution.h ├── itkComputeDisplacementDistribution.hxx ├── itkComputeImageExtremaFilter.h ├── itkComputeImageExtremaFilter.hxx ├── itkComputeJacobianTerms.h ├── itkComputeJacobianTerms.hxx ├── itkComputePreconditionerUsingDisplacementDistribution.h ├── itkComputePreconditionerUsingDisplacementDistribution.hxx ├── itkErodeMaskImageFilter.h ├── itkErodeMaskImageFilter.hxx ├── itkGenericMultiResolutionPyramidImageFilter.h ├── itkGenericMultiResolutionPyramidImageFilter.hxx ├── itkImageFileCastWriter.h ├── itkImageFileCastWriter.hxx ├── itkMeshFileReaderBase.h ├── itkMeshFileReaderBase.hxx ├── itkMultiOrderBSplineDecompositionImageFilter.h ├── itkMultiOrderBSplineDecompositionImageFilter.hxx ├── itkMultiResolutionGaussianSmoothingPyramidImageFilter.h ├── itkMultiResolutionGaussianSmoothingPyramidImageFilter.hxx ├── itkMultiResolutionImageRegistrationMethod2.h ├── itkMultiResolutionImageRegistrationMethod2.hxx ├── itkMultiResolutionShrinkPyramidImageFilter.h ├── itkMultiResolutionShrinkPyramidImageFilter.hxx ├── itkNDImageBase.h ├── itkNDImageTemplate.h ├── itkNDImageTemplate.hxx ├── itkParabolicErodeDilateImageFilter.h ├── itkParabolicErodeDilateImageFilter.hxx ├── itkParabolicErodeImageFilter.h ├── itkParabolicMorphUtils.h ├── itkRecursiveBSplineInterpolationWeightFunction.h ├── itkRecursiveBSplineInterpolationWeightFunction.hxx ├── itkReducedDimensionBSplineInterpolateImageFunction.h ├── itkReducedDimensionBSplineInterpolateImageFunction.hxx ├── itkScaledSingleValuedNonLinearOptimizer.cxx ├── itkScaledSingleValuedNonLinearOptimizer.h ├── itkTransformixInputPointFileReader.h └── itkTransformixInputPointFileReader.hxx ├── Components ├── CMakeLists.txt ├── FixedImagePyramids │ ├── FixedGenericPyramid │ │ ├── CMakeLists.txt │ │ ├── elxFixedGenericPyramid.cxx │ │ ├── elxFixedGenericPyramid.h │ │ └── elxFixedGenericPyramid.hxx │ ├── FixedRecursivePyramid │ │ ├── CMakeLists.txt │ │ ├── elxFixedRecursivePyramid.cxx │ │ ├── elxFixedRecursivePyramid.h │ │ └── elxFixedRecursivePyramid.hxx │ ├── FixedShrinkingPyramid │ │ ├── CMakeLists.txt │ │ ├── elxFixedShrinkingPyramid.cxx │ │ ├── elxFixedShrinkingPyramid.h │ │ └── elxFixedShrinkingPyramid.hxx │ ├── FixedSmoothingPyramid │ │ ├── CMakeLists.txt │ │ ├── elxFixedSmoothingPyramid.cxx │ │ ├── elxFixedSmoothingPyramid.h │ │ └── elxFixedSmoothingPyramid.hxx │ └── OpenCLFixedGenericPyramid │ │ ├── CMakeLists.txt │ │ ├── elxOpenCLFixedGenericPyramid.cxx │ │ ├── elxOpenCLFixedGenericPyramid.h │ │ └── elxOpenCLFixedGenericPyramid.hxx ├── ImageSamplers │ ├── Full │ │ ├── CMakeLists.txt │ │ ├── elxFullSampler.cxx │ │ ├── elxFullSampler.h │ │ └── elxFullSampler.hxx │ ├── Grid │ │ ├── CMakeLists.txt │ │ ├── elxGridSampler.cxx │ │ ├── elxGridSampler.h │ │ └── elxGridSampler.hxx │ ├── MultInputRandomCoordinate │ │ ├── CMakeLists.txt │ │ ├── elxMultiInputRandomCoordinateSampler.cxx │ │ ├── elxMultiInputRandomCoordinateSampler.h │ │ └── elxMultiInputRandomCoordinateSampler.hxx │ ├── Random │ │ ├── CMakeLists.txt │ │ ├── elxRandomSampler.cxx │ │ ├── elxRandomSampler.h │ │ └── elxRandomSampler.hxx │ ├── RandomCoordinate │ │ ├── CMakeLists.txt │ │ ├── elxRandomCoordinateSampler.cxx │ │ ├── elxRandomCoordinateSampler.h │ │ └── elxRandomCoordinateSampler.hxx │ └── RandomSparseMask │ │ ├── CMakeLists.txt │ │ ├── elxRandomSamplerSparseMask.cxx │ │ ├── elxRandomSamplerSparseMask.h │ │ └── elxRandomSamplerSparseMask.hxx ├── Interpolators │ ├── BSplineInterpolator │ │ ├── CMakeLists.txt │ │ ├── elxBSplineInterpolator.cxx │ │ ├── elxBSplineInterpolator.h │ │ └── elxBSplineInterpolator.hxx │ ├── BSplineInterpolatorFloat │ │ ├── CMakeLists.txt │ │ ├── elxBSplineInterpolatorFloat.cxx │ │ ├── elxBSplineInterpolatorFloat.h │ │ └── elxBSplineInterpolatorFloat.hxx │ ├── LinearInterpolator │ │ ├── CMakeLists.txt │ │ ├── elxLinearInterpolator.cxx │ │ ├── elxLinearInterpolator.h │ │ └── elxLinearInterpolator.hxx │ ├── NearestNeighborInterpolator │ │ ├── CMakeLists.txt │ │ ├── elxNearestNeighborInterpolator.cxx │ │ ├── elxNearestNeighborInterpolator.h │ │ └── elxNearestNeighborInterpolator.hxx │ ├── RayCastInterpolator │ │ ├── CMakeLists.txt │ │ ├── elxRayCastInterpolator.cxx │ │ ├── elxRayCastInterpolator.h │ │ └── elxRayCastInterpolator.hxx │ └── ReducedDimensionBSplineInterpolator │ │ ├── CMakeLists.txt │ │ ├── elxReducedDimensionBSplineInterpolator.cxx │ │ ├── elxReducedDimensionBSplineInterpolator.h │ │ └── elxReducedDimensionBSplineInterpolator.hxx ├── Metrics │ ├── AdvancedKappaStatistic │ │ ├── CMakeLists.txt │ │ ├── elxAdvancedKappaStatisticMetric.cxx │ │ ├── elxAdvancedKappaStatisticMetric.h │ │ ├── elxAdvancedKappaStatisticMetric.hxx │ │ ├── itkAdvancedKappaStatisticImageToImageMetric.h │ │ └── itkAdvancedKappaStatisticImageToImageMetric.hxx │ ├── AdvancedMattesMutualInformation │ │ ├── CMakeLists.txt │ │ ├── elxAdvancedMattesMutualInformationMetric.cxx │ │ ├── elxAdvancedMattesMutualInformationMetric.h │ │ ├── elxAdvancedMattesMutualInformationMetric.hxx │ │ ├── itkParzenWindowMutualInformationImageToImageMetric.h │ │ └── itkParzenWindowMutualInformationImageToImageMetric.hxx │ ├── AdvancedMeanSquares │ │ ├── CMakeLists.txt │ │ ├── elxAdvancedMeanSquaresMetric.cxx │ │ ├── elxAdvancedMeanSquaresMetric.h │ │ ├── elxAdvancedMeanSquaresMetric.hxx │ │ ├── itkAdvancedMeanSquaresImageToImageMetric.h │ │ └── itkAdvancedMeanSquaresImageToImageMetric.hxx │ ├── AdvancedNormalizedCorrelation │ │ ├── CMakeLists.txt │ │ ├── elxAdvancedNormalizedCorrelationMetric.cxx │ │ ├── elxAdvancedNormalizedCorrelationMetric.h │ │ ├── elxAdvancedNormalizedCorrelationMetric.hxx │ │ ├── itkAdvancedNormalizedCorrelationImageToImageMetric.h │ │ └── itkAdvancedNormalizedCorrelationImageToImageMetric.hxx │ ├── BendingEnergyPenalty │ │ ├── CMakeLists.txt │ │ ├── elxTransformBendingEnergyPenaltyTerm.cxx │ │ ├── elxTransformBendingEnergyPenaltyTerm.h │ │ ├── elxTransformBendingEnergyPenaltyTerm.hxx │ │ ├── itkTransformBendingEnergyPenaltyTerm.h │ │ └── itkTransformBendingEnergyPenaltyTerm.hxx │ ├── CorrespondingPointsEuclideanDistanceMetric │ │ ├── CMakeLists.txt │ │ ├── elxCorrespondingPointsEuclideanDistanceMetric.cxx │ │ ├── elxCorrespondingPointsEuclideanDistanceMetric.h │ │ ├── elxCorrespondingPointsEuclideanDistanceMetric.hxx │ │ ├── itkCorrespondingPointsEuclideanDistancePointMetric.h │ │ └── itkCorrespondingPointsEuclideanDistancePointMetric.hxx │ ├── DisplacementMagnitudePenalty │ │ ├── CMakeLists.txt │ │ ├── elxDisplacementMagnitudePenalty.cxx │ │ ├── elxDisplacementMagnitudePenalty.h │ │ ├── elxDisplacementMagnitudePenalty.hxx │ │ ├── itkDisplacementMagnitudePenaltyTerm.h │ │ └── itkDisplacementMagnitudePenaltyTerm.hxx │ ├── DistancePreservingRigidityPenalty │ │ ├── CMakeLists.txt │ │ ├── elxDistancePreservingRigidityPenaltyTerm.cxx │ │ ├── elxDistancePreservingRigidityPenaltyTerm.h │ │ ├── elxDistancePreservingRigidityPenaltyTerm.hxx │ │ ├── itkDistancePreservingRigidityPenaltyTerm.h │ │ └── itkDistancePreservingRigidityPenaltyTerm.hxx │ ├── GradientDifference │ │ ├── CMakeLists.txt │ │ ├── elxGradientDifferenceMetric.cxx │ │ ├── elxGradientDifferenceMetric.h │ │ ├── elxGradientDifferenceMetric.hxx │ │ ├── itkGradientDifferenceImageToImageMetric2.h │ │ └── itkGradientDifferenceImageToImageMetric2.hxx │ ├── KNNGraphAlphaMutualInformation │ │ ├── CMakeLists.txt │ │ ├── KNN │ │ │ ├── CMakeLists.txt │ │ │ ├── ann_1.1 │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Copyright.txt │ │ │ │ ├── License.txt │ │ │ │ ├── ReadMe.txt │ │ │ │ ├── include │ │ │ │ │ └── ANN │ │ │ │ │ │ ├── ANN.h.in │ │ │ │ │ │ ├── ANNperf.h │ │ │ │ │ │ └── ANNx.h │ │ │ │ └── src │ │ │ │ │ ├── ANN.cpp │ │ │ │ │ ├── bd_fix_rad_search.cpp │ │ │ │ │ ├── bd_pr_search.cpp │ │ │ │ │ ├── bd_search.cpp │ │ │ │ │ ├── bd_tree.cpp │ │ │ │ │ ├── bd_tree.h │ │ │ │ │ ├── brute.cpp │ │ │ │ │ ├── kd_dump.cpp │ │ │ │ │ ├── kd_fix_rad_search.cpp │ │ │ │ │ ├── kd_fix_rad_search.h │ │ │ │ │ ├── kd_pr_search.cpp │ │ │ │ │ ├── kd_pr_search.h │ │ │ │ │ ├── kd_search.cpp │ │ │ │ │ ├── kd_search.h │ │ │ │ │ ├── kd_split.cpp │ │ │ │ │ ├── kd_split.h │ │ │ │ │ ├── kd_tree.cpp │ │ │ │ │ ├── kd_tree.h │ │ │ │ │ ├── kd_util.cpp │ │ │ │ │ ├── kd_util.h │ │ │ │ │ ├── perf.cpp │ │ │ │ │ ├── pr_queue.h │ │ │ │ │ └── pr_queue_k.h │ │ │ ├── itkANNBinaryTreeCreator.cxx │ │ │ ├── itkANNBinaryTreeCreator.h │ │ │ ├── itkANNBruteForceTree.h │ │ │ ├── itkANNBruteForceTree.hxx │ │ │ ├── itkANNFixedRadiusTreeSearch.h │ │ │ ├── itkANNFixedRadiusTreeSearch.hxx │ │ │ ├── itkANNPriorityTreeSearch.h │ │ │ ├── itkANNPriorityTreeSearch.hxx │ │ │ ├── itkANNStandardTreeSearch.h │ │ │ ├── itkANNStandardTreeSearch.hxx │ │ │ ├── itkANNbdTree.h │ │ │ ├── itkANNbdTree.hxx │ │ │ ├── itkANNkDTree.h │ │ │ ├── itkANNkDTree.hxx │ │ │ ├── itkBinaryANNTreeBase.h │ │ │ ├── itkBinaryANNTreeBase.hxx │ │ │ ├── itkBinaryANNTreeSearchBase.h │ │ │ ├── itkBinaryANNTreeSearchBase.hxx │ │ │ ├── itkBinaryTreeBase.h │ │ │ ├── itkBinaryTreeBase.hxx │ │ │ ├── itkBinaryTreeSearchBase.h │ │ │ ├── itkBinaryTreeSearchBase.hxx │ │ │ ├── itkListSampleCArray.h │ │ │ └── itkListSampleCArray.hxx │ │ ├── elxKNNGraphAlphaMutualInformationMetric.cxx │ │ ├── elxKNNGraphAlphaMutualInformationMetric.h │ │ ├── elxKNNGraphAlphaMutualInformationMetric.hxx │ │ ├── itkKNNGraphAlphaMutualInformationImageToImageMetric.h │ │ └── itkKNNGraphAlphaMutualInformationImageToImageMetric.hxx │ ├── MissingStructurePenalty │ │ ├── CMakeLists.txt │ │ ├── elxMissingStructurePenalty.cxx │ │ ├── elxMissingStructurePenalty.h │ │ ├── elxMissingStructurePenalty.hxx │ │ ├── itkMissingStructurePenalty.h │ │ ├── itkMissingStructurePenalty.hxx │ │ └── vnl_adjugate_fixed.h │ ├── NormalizedGradientCorrelation │ │ ├── CMakeLists.txt │ │ ├── elxNormalizedGradientCorrelationMetric.cxx │ │ ├── elxNormalizedGradientCorrelationMetric.h │ │ ├── elxNormalizedGradientCorrelationMetric.hxx │ │ ├── itkNormalizedGradientCorrelationImageToImageMetric.h │ │ └── itkNormalizedGradientCorrelationImageToImageMetric.hxx │ ├── NormalizedMutualInformation │ │ ├── CMakeLists.txt │ │ ├── elxNormalizedMutualInformationMetric.cxx │ │ ├── elxNormalizedMutualInformationMetric.h │ │ ├── elxNormalizedMutualInformationMetric.hxx │ │ ├── itkParzenWindowNormalizedMutualInformationImageToImageMetric.h │ │ └── itkParzenWindowNormalizedMutualInformationImageToImageMetric.hxx │ ├── PCAMetric │ │ ├── CMakeLists.txt │ │ ├── elxPCAMetric.cxx │ │ ├── elxPCAMetric.h │ │ ├── elxPCAMetric.hxx │ │ ├── itkPCAMetric.h │ │ └── itkPCAMetric.hxx │ ├── PCAMetric2 │ │ ├── CMakeLists.txt │ │ ├── elxPCAMetric2.cxx │ │ ├── elxPCAMetric2.h │ │ ├── elxPCAMetric2.hxx │ │ ├── itkPCAMetric2.h │ │ └── itkPCAMetric2.hxx │ ├── PatternIntensity │ │ ├── CMakeLists.txt │ │ ├── elxPatternIntensityMetric.cxx │ │ ├── elxPatternIntensityMetric.h │ │ ├── elxPatternIntensityMetric.hxx │ │ ├── itkPatternIntensityImageToImageMetric.h │ │ └── itkPatternIntensityImageToImageMetric.hxx │ ├── PolydataDummyPenalty │ │ ├── CMakeLists.txt │ │ ├── elxPolydataDummyPenalty.cxx │ │ ├── elxPolydataDummyPenalty.h │ │ ├── elxPolydataDummyPenalty.hxx │ │ ├── itkPolydataDummyPenalty.h │ │ └── itkPolydataDummyPenalty.hxx │ ├── RigidityPenalty │ │ ├── CMakeLists.txt │ │ ├── elxTransformRigidityPenaltyTerm.cxx │ │ ├── elxTransformRigidityPenaltyTerm.h │ │ ├── elxTransformRigidityPenaltyTerm.hxx │ │ ├── itkTransformRigidityPenaltyTerm.h │ │ └── itkTransformRigidityPenaltyTerm.hxx │ ├── StatisticalShapePenalty │ │ ├── CMakeLists.txt │ │ ├── elxStatisticalShapePenalty.cxx │ │ ├── elxStatisticalShapePenalty.h │ │ ├── elxStatisticalShapePenalty.hxx │ │ ├── itkStatisticalShapePointPenalty.h │ │ └── itkStatisticalShapePointPenalty.hxx │ ├── SumOfPairwiseCorrelationsMetric │ │ ├── CMakeLists.txt │ │ ├── elxSumOfPairwiseCorrelationCoefficientsMetric.cxx │ │ ├── elxSumOfPairwiseCorrelationCoefficientsMetric.h │ │ ├── elxSumOfPairwiseCorrelationCoefficientsMetric.hxx │ │ ├── itkSumOfPairwiseCorrelationCoefficientsMetric.h │ │ └── itkSumOfPairwiseCorrelationCoefficientsMetric.hxx │ ├── SumSquaredTissueVolumeDifferenceMetric │ │ ├── CMakeLists.txt │ │ ├── elxSumSquaredTissueVolumeDifferenceMetric.cxx │ │ ├── elxSumSquaredTissueVolumeDifferenceMetric.h │ │ ├── elxSumSquaredTissueVolumeDifferenceMetric.hxx │ │ ├── itkSumSquaredTissueVolumeDifferenceImageToImageMetric.h │ │ └── itkSumSquaredTissueVolumeDifferenceImageToImageMetric.hxx │ └── VarianceOverLastDimension │ │ ├── CMakeLists.txt │ │ ├── elxVarianceOverLastDimensionMetric.cxx │ │ ├── elxVarianceOverLastDimensionMetric.h │ │ ├── elxVarianceOverLastDimensionMetric.hxx │ │ ├── itkVarianceOverLastDimensionImageMetric.h │ │ └── itkVarianceOverLastDimensionImageMetric.hxx ├── MovingImagePyramids │ ├── MovingGenericPyramid │ │ ├── CMakeLists.txt │ │ ├── elxMovingGenericPyramid.cxx │ │ ├── elxMovingGenericPyramid.h │ │ └── elxMovingGenericPyramid.hxx │ ├── MovingRecursivePyramid │ │ ├── CMakeLists.txt │ │ ├── elxMovingRecursivePyramid.cxx │ │ ├── elxMovingRecursivePyramid.h │ │ └── elxMovingRecursivePyramid.hxx │ ├── MovingShrinkingPyramid │ │ ├── CMakeLists.txt │ │ ├── elxMovingShrinkingPyramid.cxx │ │ ├── elxMovingShrinkingPyramid.h │ │ └── elxMovingShrinkingPyramid.hxx │ ├── MovingSmoothingPyramid │ │ ├── CMakeLists.txt │ │ ├── elxMovingSmoothingPyramid.cxx │ │ ├── elxMovingSmoothingPyramid.h │ │ └── elxMovingSmoothingPyramid.hxx │ └── OpenCLMovingGenericPyramid │ │ ├── CMakeLists.txt │ │ ├── elxOpenCLMovingGenericPyramid.cxx │ │ ├── elxOpenCLMovingGenericPyramid.h │ │ └── elxOpenCLMovingGenericPyramid.hxx ├── Optimizers │ ├── AdaGrad │ │ ├── CMakeLists.txt │ │ ├── elxAdaGrad.cxx │ │ ├── elxAdaGrad.h │ │ ├── elxAdaGrad.hxx │ │ ├── itkAdaptiveStepsizeOptimizer.cxx │ │ └── itkAdaptiveStepsizeOptimizer.h │ ├── AdaptiveStochasticGradientDescent │ │ ├── CMakeLists.txt │ │ ├── elxAdaptiveStochasticGradientDescent.cxx │ │ ├── elxAdaptiveStochasticGradientDescent.h │ │ ├── elxAdaptiveStochasticGradientDescent.hxx │ │ ├── itkAdaptiveStochasticGradientDescentOptimizer.cxx │ │ └── itkAdaptiveStochasticGradientDescentOptimizer.h │ ├── AdaptiveStochasticLBFGS │ │ ├── CMakeLists.txt │ │ ├── elxAdaptiveStochasticLBFGS.cxx │ │ ├── elxAdaptiveStochasticLBFGS.h │ │ ├── elxAdaptiveStochasticLBFGS.hxx │ │ ├── itkAdaptiveStochasticLBFGSOptimizer.cxx │ │ └── itkAdaptiveStochasticLBFGSOptimizer.h │ ├── AdaptiveStochasticVarianceReducedGradient │ │ ├── CMakeLists.txt │ │ ├── elxAdaptiveStochasticVarianceReducedGradient.cxx │ │ ├── elxAdaptiveStochasticVarianceReducedGradient.h │ │ ├── elxAdaptiveStochasticVarianceReducedGradient.hxx │ │ ├── itkAdaptiveStochasticVarianceReducedGradientOptimizer.cxx │ │ ├── itkAdaptiveStochasticVarianceReducedGradientOptimizer.h │ │ ├── itkStandardStochasticVarianceReducedGradientDescentOptimizer.cxx │ │ ├── itkStandardStochasticVarianceReducedGradientDescentOptimizer.h │ │ ├── itkStochasticVarianceReducedGradientDescentOptimizer.cxx │ │ └── itkStochasticVarianceReducedGradientDescentOptimizer.h │ ├── CMAEvolutionStrategy │ │ ├── CMakeLists.txt │ │ ├── elxCMAEvolutionStrategy.cxx │ │ ├── elxCMAEvolutionStrategy.h │ │ ├── elxCMAEvolutionStrategy.hxx │ │ ├── itkCMAEvolutionStrategyOptimizer.cxx │ │ └── itkCMAEvolutionStrategyOptimizer.h │ ├── ConjugateGradient │ │ ├── CMakeLists.txt │ │ ├── elxConjugateGradient.cxx │ │ ├── elxConjugateGradient.h │ │ ├── elxConjugateGradient.hxx │ │ ├── itkGenericConjugateGradientOptimizer.cxx │ │ └── itkGenericConjugateGradientOptimizer.h │ ├── ConjugateGradientFRPR │ │ ├── CMakeLists.txt │ │ ├── elxConjugateGradientFRPR.cxx │ │ ├── elxConjugateGradientFRPR.h │ │ └── elxConjugateGradientFRPR.hxx │ ├── FiniteDifferenceGradientDescent │ │ ├── CMakeLists.txt │ │ ├── elxFiniteDifferenceGradientDescent.cxx │ │ ├── elxFiniteDifferenceGradientDescent.h │ │ ├── elxFiniteDifferenceGradientDescent.hxx │ │ ├── itkFiniteDifferenceGradientDescentOptimizer.cxx │ │ └── itkFiniteDifferenceGradientDescentOptimizer.h │ ├── FullSearch │ │ ├── CMakeLists.txt │ │ ├── elxFullSearchOptimizer.cxx │ │ ├── elxFullSearchOptimizer.h │ │ ├── elxFullSearchOptimizer.hxx │ │ ├── itkFullSearchOptimizer.cxx │ │ └── itkFullSearchOptimizer.h │ ├── Powell │ │ ├── CMakeLists.txt │ │ ├── elxPowell.cxx │ │ ├── elxPowell.h │ │ └── elxPowell.hxx │ ├── PreconditionedStochasticGradientDescent │ │ ├── CMakeLists.txt │ │ ├── elxPreconditionedStochasticGradientDescent.cxx │ │ ├── elxPreconditionedStochasticGradientDescent.h │ │ ├── elxPreconditionedStochasticGradientDescent.hxx │ │ ├── itkPreconditionedASGDOptimizer.cxx │ │ └── itkPreconditionedASGDOptimizer.h │ ├── QuasiNewtonLBFGS │ │ ├── CMakeLists.txt │ │ ├── elxQuasiNewtonLBFGS.cxx │ │ ├── elxQuasiNewtonLBFGS.h │ │ ├── elxQuasiNewtonLBFGS.hxx │ │ ├── itkQuasiNewtonLBFGSOptimizer.cxx │ │ └── itkQuasiNewtonLBFGSOptimizer.h │ ├── RSGDEachParameterApart │ │ ├── CMakeLists.txt │ │ ├── elxRSGDEachParameterApart.cxx │ │ ├── elxRSGDEachParameterApart.h │ │ ├── elxRSGDEachParameterApart.hxx │ │ ├── itkRSGDEachParameterApartBaseOptimizer.cxx │ │ ├── itkRSGDEachParameterApartBaseOptimizer.h │ │ ├── itkRSGDEachParameterApartOptimizer.cxx │ │ └── itkRSGDEachParameterApartOptimizer.h │ ├── RegularStepGradientDescent │ │ ├── CMakeLists.txt │ │ ├── elxRegularStepGradientDescent.cxx │ │ ├── elxRegularStepGradientDescent.h │ │ └── elxRegularStepGradientDescent.hxx │ ├── Simplex │ │ ├── CMakeLists.txt │ │ ├── elxSimplex.cxx │ │ ├── elxSimplex.h │ │ └── elxSimplex.hxx │ ├── SimultaneousPerturbation │ │ ├── CMakeLists.txt │ │ ├── elxSimultaneousPerturbation.cxx │ │ ├── elxSimultaneousPerturbation.h │ │ └── elxSimultaneousPerturbation.hxx │ ├── StandardGradientDescent │ │ ├── CMakeLists.txt │ │ ├── elxStandardGradientDescent.cxx │ │ ├── elxStandardGradientDescent.h │ │ ├── elxStandardGradientDescent.hxx │ │ ├── itkGradientDescentOptimizer2.cxx │ │ ├── itkGradientDescentOptimizer2.h │ │ ├── itkStandardGradientDescentOptimizer.cxx │ │ └── itkStandardGradientDescentOptimizer.h │ └── StandardStochasticGradientDescent │ │ ├── itkStandardStochasticGradientDescentOptimizer.cxx │ │ ├── itkStandardStochasticGradientDescentOptimizer.h │ │ ├── itkStochasticGradientDescentOptimizer.cxx │ │ └── itkStochasticGradientDescentOptimizer.h ├── Registrations │ ├── MultiMetricMultiResolutionRegistration │ │ ├── CMakeLists.txt │ │ ├── elxMultiMetricMultiResolutionRegistration.cxx │ │ ├── elxMultiMetricMultiResolutionRegistration.h │ │ ├── elxMultiMetricMultiResolutionRegistration.hxx │ │ ├── itkCombinationImageToImageMetric.h │ │ ├── itkCombinationImageToImageMetric.hxx │ │ ├── itkMultiMetricMultiResolutionImageRegistrationMethod.h │ │ └── itkMultiMetricMultiResolutionImageRegistrationMethod.hxx │ ├── MultiResolutionRegistration │ │ ├── CMakeLists.txt │ │ ├── elxMultiResolutionRegistration.cxx │ │ ├── elxMultiResolutionRegistration.h │ │ └── elxMultiResolutionRegistration.hxx │ └── MultiResolutionRegistrationWithFeatures │ │ ├── CMakeLists.txt │ │ ├── elxMultiResolutionRegistrationWithFeatures.cxx │ │ ├── elxMultiResolutionRegistrationWithFeatures.h │ │ ├── elxMultiResolutionRegistrationWithFeatures.hxx │ │ ├── itkMultiInputMultiResolutionImageRegistrationMethodBase.h │ │ ├── itkMultiInputMultiResolutionImageRegistrationMethodBase.hxx │ │ ├── itkMultiResolutionImageRegistrationMethodWithFeatures.h │ │ └── itkMultiResolutionImageRegistrationMethodWithFeatures.hxx ├── ResampleInterpolators │ ├── BSplineResampleInterpolator │ │ ├── CMakeLists.txt │ │ ├── elxBSplineResampleInterpolator.cxx │ │ ├── elxBSplineResampleInterpolator.h │ │ └── elxBSplineResampleInterpolator.hxx │ ├── BSplineResampleInterpolatorFloat │ │ ├── CMakeLists.txt │ │ ├── elxBSplineResampleInterpolatorFloat.cxx │ │ ├── elxBSplineResampleInterpolatorFloat.h │ │ └── elxBSplineResampleInterpolatorFloat.hxx │ ├── LinearResampleInterpolator │ │ ├── CMakeLists.txt │ │ ├── elxLinearResampleInterpolator.cxx │ │ ├── elxLinearResampleInterpolator.h │ │ └── elxLinearResampleInterpolator.hxx │ ├── NearestNeighborResampleInterpolator │ │ ├── CMakeLists.txt │ │ ├── elxNearestNeighborResampleInterpolator.cxx │ │ ├── elxNearestNeighborResampleInterpolator.h │ │ └── elxNearestNeighborResampleInterpolator.hxx │ ├── RDBSplineResampleInterpolator │ │ ├── CMakeLists.txt │ │ ├── elxRDBSplineResampleInterpolator.cxx │ │ ├── elxRDBSplineResampleInterpolator.h │ │ └── elxRDBSplineResampleInterpolator.hxx │ └── RayCastResampleInterpolator │ │ ├── CMakeLists.txt │ │ ├── elxRayCastResampleInterpolator.cxx │ │ ├── elxRayCastResampleInterpolator.h │ │ └── elxRayCastResampleInterpolator.hxx ├── Resamplers │ ├── DefaultResampler │ │ ├── CMakeLists.txt │ │ ├── elxDefaultResampler.cxx │ │ ├── elxDefaultResampler.h │ │ └── elxDefaultResampler.hxx │ └── OpenCLResampler │ │ ├── CMakeLists.txt │ │ ├── elxOpenCLResampler.cxx │ │ ├── elxOpenCLResampler.h │ │ └── elxOpenCLResampler.hxx ├── Transforms │ ├── AdvancedAffineTransform │ │ ├── CMakeLists.txt │ │ ├── elxAdvancedAffineTransform.cxx │ │ ├── elxAdvancedAffineTransform.h │ │ ├── elxAdvancedAffineTransform.hxx │ │ ├── itkCenteredTransformInitializer2.h │ │ └── itkCenteredTransformInitializer2.hxx │ ├── AdvancedBSplineTransform │ │ ├── CMakeLists.txt │ │ ├── elxAdvancedBSplineTransform.cxx │ │ ├── elxAdvancedBSplineTransform.h │ │ └── elxAdvancedBSplineTransform.hxx │ ├── AffineDTITransform │ │ ├── CMakeLists.txt │ │ ├── elxAffineDTITransform.cxx │ │ ├── elxAffineDTITransform.h │ │ ├── elxAffineDTITransform.hxx │ │ ├── itkAffineDTI2DTransform.h │ │ ├── itkAffineDTI2DTransform.hxx │ │ ├── itkAffineDTI3DTransform.h │ │ ├── itkAffineDTI3DTransform.hxx │ │ └── itkAffineDTITransform.h │ ├── AffineLogStackTransform │ │ ├── CMakeLists.txt │ │ ├── elxAffineLogStackTransform.cxx │ │ ├── elxAffineLogStackTransform.h │ │ ├── elxAffineLogStackTransform.hxx │ │ └── itkAffineLogStackTransform.h │ ├── AffineLogTransform │ │ ├── CMakeLists.txt │ │ ├── elxAffineLogTransform.cxx │ │ ├── elxAffineLogTransform.h │ │ ├── elxAffineLogTransform.hxx │ │ ├── itkAffineLogTransform.h │ │ └── itkAffineLogTransform.hxx │ ├── BSplineDeformableTransformWithDiffusion │ │ ├── CMakeLists.txt │ │ ├── elxBSplineTransformWithDiffusion.cxx │ │ ├── elxBSplineTransformWithDiffusion.h │ │ ├── elxBSplineTransformWithDiffusion.hxx │ │ ├── itkDeformationFieldRegulizer.h │ │ ├── itkDeformationFieldRegulizer.hxx │ │ ├── itkDeformationVectorFieldTransform.h │ │ ├── itkDeformationVectorFieldTransform.hxx │ │ ├── itkVectorMeanDiffusionImageFilter.h │ │ └── itkVectorMeanDiffusionImageFilter.hxx │ ├── BSplineStackTransform │ │ ├── CMakeLists.txt │ │ ├── elxBSplineStackTransform.cxx │ │ ├── elxBSplineStackTransform.h │ │ ├── elxBSplineStackTransform.hxx │ │ └── itkBSplineStackTransform.h │ ├── DeformationFieldTransform │ │ ├── CMakeLists.txt │ │ ├── elxDeformationFieldTransform.cxx │ │ ├── elxDeformationFieldTransform.h │ │ ├── elxDeformationFieldTransform.hxx │ │ ├── itkDeformationFieldInterpolatingTransform.h │ │ └── itkDeformationFieldInterpolatingTransform.hxx │ ├── EulerStackTransform │ │ ├── CMakeLists.txt │ │ ├── elxEulerStackTransform.cxx │ │ ├── elxEulerStackTransform.h │ │ ├── elxEulerStackTransform.hxx │ │ └── itkEulerStackTransform.h │ ├── EulerTransform │ │ ├── CMakeLists.txt │ │ ├── elxEulerTransform.cxx │ │ ├── elxEulerTransform.h │ │ └── elxEulerTransform.hxx │ ├── ExternalTransform │ │ ├── CMakeLists.txt │ │ ├── elxAdvancedTransformAdapter.h │ │ ├── elxExternalTransform.cxx │ │ ├── elxExternalTransform.h │ │ └── elxExternalTransform.hxx │ ├── MultiBSplineTransformWithNormal │ │ ├── CMakeLists.txt │ │ ├── elxMultiBSplineTransformWithNormal.cxx │ │ ├── elxMultiBSplineTransformWithNormal.h │ │ ├── elxMultiBSplineTransformWithNormal.hxx │ │ ├── itkMultiBSplineDeformableTransformWithNormal.h │ │ └── itkMultiBSplineDeformableTransformWithNormal.hxx │ ├── RecursiveBSplineTransform │ │ ├── CMakeLists.txt │ │ ├── elxRecursiveBSplineTransform.cxx │ │ ├── elxRecursiveBSplineTransform.h │ │ └── elxRecursiveBSplineTransform.hxx │ ├── SimilarityTransform │ │ ├── CMakeLists.txt │ │ ├── elxSimilarityTransform.cxx │ │ ├── elxSimilarityTransform.h │ │ ├── elxSimilarityTransform.hxx │ │ └── itkSimilarityTransform.h │ ├── SplineKernelTransform │ │ ├── CMakeLists.txt │ │ ├── elxSplineKernelTransform.cxx │ │ ├── elxSplineKernelTransform.h │ │ ├── elxSplineKernelTransform.hxx │ │ ├── itkElasticBodyReciprocalSplineKernelTransform2.h │ │ ├── itkElasticBodyReciprocalSplineKernelTransform2.hxx │ │ ├── itkElasticBodySplineKernelTransform2.h │ │ ├── itkElasticBodySplineKernelTransform2.hxx │ │ ├── itkKernelTransform2.h │ │ ├── itkKernelTransform2.hxx │ │ ├── itkThinPlateR2LogRSplineKernelTransform2.h │ │ ├── itkThinPlateR2LogRSplineKernelTransform2.hxx │ │ ├── itkThinPlateSplineKernelTransform2.h │ │ ├── itkThinPlateSplineKernelTransform2.hxx │ │ ├── itkVolumeSplineKernelTransform2.h │ │ └── itkVolumeSplineKernelTransform2.hxx │ ├── TranslationStackTransform │ │ ├── CMakeLists.txt │ │ ├── elxTranslationStackTransform.cxx │ │ ├── elxTranslationStackTransform.h │ │ ├── elxTranslationStackTransform.hxx │ │ └── itkTranslationStackTransform.h │ ├── TranslationTransform │ │ ├── CMakeLists.txt │ │ ├── elxTranslationTransform.cxx │ │ ├── elxTranslationTransform.h │ │ ├── elxTranslationTransform.hxx │ │ ├── itkTranslationTransformInitializer.h │ │ └── itkTranslationTransformInitializer.hxx │ └── WeightedCombinationTransform │ │ ├── CMakeLists.txt │ │ ├── elxWeightedCombinationTransform.cxx │ │ ├── elxWeightedCombinationTransform.h │ │ ├── elxWeightedCombinationTransform.hxx │ │ ├── itkWeightedCombinationTransform.h │ │ └── itkWeightedCombinationTransform.hxx └── elxGenericPyramidHelper.h ├── Core ├── CMakeLists.txt ├── ComponentBaseClasses │ ├── elxFixedImagePyramidBase.h │ ├── elxFixedImagePyramidBase.hxx │ ├── elxImageSamplerBase.h │ ├── elxImageSamplerBase.hxx │ ├── elxInterpolatorBase.h │ ├── elxInterpolatorBase.hxx │ ├── elxMetricBase.h │ ├── elxMetricBase.hxx │ ├── elxMovingImagePyramidBase.h │ ├── elxMovingImagePyramidBase.hxx │ ├── elxOptimizerBase.h │ ├── elxOptimizerBase.hxx │ ├── elxRegistrationBase.h │ ├── elxRegistrationBase.hxx │ ├── elxResampleInterpolatorBase.h │ ├── elxResampleInterpolatorBase.hxx │ ├── elxResamplerBase.h │ ├── elxResamplerBase.hxx │ ├── elxTransformBase.h │ └── elxTransformBase.hxx ├── Configuration │ ├── elxConfiguration.cxx │ └── elxConfiguration.h ├── Install │ ├── CMakeLists.txt │ ├── elxBaseComponent.cxx │ ├── elxBaseComponent.h │ ├── elxBaseComponentSE.h │ ├── elxBaseComponentSE.hxx │ ├── elxComponentDatabase.cxx │ ├── elxComponentDatabase.h │ ├── elxComponentInstaller.h │ ├── elxComponentLoader.cxx │ ├── elxComponentLoader.h │ ├── elxConversion.cxx │ ├── elxConversion.h │ ├── elxIncludes.h │ ├── elxInstallAllComponents.h │ ├── elxInstallFunctions.h │ ├── elxMacro.h │ ├── elxOpenCLSupportedImageTypes.h.in │ ├── elxPrepareImageTypeSupport.h │ └── elxSupportedImageTypes.h.in ├── Kernel │ ├── elxElastixBase.cxx │ ├── elxElastixBase.h │ ├── elxElastixMain.cxx │ ├── elxElastixMain.h │ ├── elxElastixTemplate.h │ ├── elxElastixTemplate.hxx │ ├── elxIterationInfo.cxx │ ├── elxIterationInfo.h │ ├── elxMainBase.cxx │ ├── elxMainBase.h │ ├── elxTransformixMain.cxx │ ├── elxTransformixMain.h │ ├── elxlog.cxx │ └── elxlog.h ├── Main │ ├── GTesting │ │ ├── CMakeLists.txt │ │ ├── ElastixLibGTest.cxx │ │ ├── GetDefaultParameterMapGTest.cxx │ │ ├── ParameterObjectGTest.cxx │ │ ├── elxCoreMainGTestUtilities.cxx │ │ ├── elxCoreMainGTestUtilities.h │ │ ├── itkElastixRegistrationMethodGTest.cxx │ │ └── itkTransformixFilterGTest.cxx │ ├── elastix.cxx │ ├── elastix.h │ ├── elastixlib.cxx │ ├── elastixlib.h │ ├── elxForEachSupportedImageType.h │ ├── elxLibUtilities.cxx │ ├── elxLibUtilities.h │ ├── elxMainExeUtilities.cxx │ ├── elxMainExeUtilities.h │ ├── elxParameterObject.cxx │ ├── elxParameterObject.h │ ├── elxPixelTypeToString.h │ ├── itkElastixLogLevel.h │ ├── itkElastixRegistrationMethod.h │ ├── itkElastixRegistrationMethod.hxx │ ├── itkTransformixFilter.h │ ├── itkTransformixFilter.hxx │ ├── transformix.cxx │ ├── transformixlib.cxx │ └── transformixlib.h ├── elxGitRevisionInfo.h.in ├── elxProgressCommand.cxx ├── elxProgressCommand.h └── elxVersionMacros.h.in ├── Dockerfile ├── ElastixConfig.cmake.in ├── ElastixConfigVersion.cmake.in ├── GOVERNANCE.md ├── LICENSE ├── NOTICE ├── README.md ├── Testing ├── Baselines │ ├── 3DCT_lung.mha │ ├── 3DCT_lung_groundtruth_point.txt │ ├── TransformParameters_3DCT_lung.Kappa.bspline.ASGD.001.txt.in │ ├── TransformParameters_3DCT_lung.MI.bspline.ASGD.001.txt.in │ ├── TransformParameters_3DCT_lung.MI.bspline.SGD.001.txt.in │ ├── TransformParameters_3DCT_lung.MI.bspline.SGD.002.txt.in │ ├── TransformParameters_3DCT_lung.MI.bspline.SGD.003.txt.in │ ├── TransformParameters_3DCT_lung.MI.bspline.SGD.004.txt.in │ ├── TransformParameters_3DCT_lung.NC.affine.ASGD.001.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline.ASGD.001a.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline.ASGD.001b.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline.ASGD.001c.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline.ASGD.001d.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline.ASGD.002.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline.ASGD.003.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline.ASGD.004.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline.ASGD.004b.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline.QN.001.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline.SGD.001.txt.in │ ├── TransformParameters_3DCT_lung.NC.bspline_r.ASGD.001a.txt.in │ ├── TransformParameters_3DCT_lung.NC.euler.ASGD.001.txt.in │ ├── TransformParameters_3DCT_lung.NC.translation.ASGD.001.txt.in │ ├── TransformParameters_3DCT_lung.NMI.bspline.ASGD.001.txt.in │ ├── TransformParameters_3DCT_lung.SSD.bspline.ASGD.001.txt.in │ ├── TransformParameters_3DCT_lung.SSD.bspline.ASGD.002.txt.in │ ├── TransformParameters_3DCT_lung.SSD.bspline.ASGD.003.txt.in │ ├── TransformParameters_3DCT_lung.affine.inverse.txt │ ├── TransformParameters_3DCT_lung.example.txt.in │ ├── TransformParameters_BIGR.PCStefan_3DCT_lung.MI.bspline.ASGD.001.txt.in │ ├── TransformParameters_BIGR.PCStefan_3DCT_lung.NMI.bspline.ASGD.001.txt.in │ ├── TransformParameters_BIGR.cluster_3DCT_lung.MI.bspline.ASGD.001.txt.in │ ├── TransformParameters_BIGR.cluster_3DCT_lung.NMI.bspline.ASGD.001.txt.in │ ├── TransformParameters_LKEB-ELDB91_3DCT_lung.MI.bspline.ASGD.001.txt.in │ ├── TransformParameters_LKEB-ELDB91_3DCT_lung.NMI.bspline.ASGD.001.txt.in │ ├── TransformParameters_LKEB.MacMini_3DCT_lung.MI.bspline.ASGD.001.txt.in │ ├── TransformParameters_LKEB.MacMini_3DCT_lung.NMI.bspline.ASGD.001.txt.in │ ├── checksums_BIGR.PCStefan_WinXP-32bit-VS2008.txt │ ├── checksums_BIGR.cluster_Linux-64bit-gcc4.txt │ ├── checksums_LKEB.ELDB91_Linux-64bit-gcc5.txt │ ├── checksums_LKEB.MacMini_MacOSX-64bit-gcc4.txt │ ├── checksums_LKEB.PCMarius_Win10-64bit-VS2015.txt │ ├── example.mha │ ├── example_BIGR.PCStefan.mha │ ├── example_BIGR.cluster.mha │ ├── example_LKEB-ELDB91.mha │ └── example_LKEB.MacMini.mha ├── CI │ └── Azure │ │ └── ci.yml ├── CMakeLists.txt ├── Dashboard │ ├── elxCommonCDash.cmake │ ├── elxDashboardCommon.cmake │ ├── elxDashboard_BIGR_linux64_gcc.cmake │ ├── elxDashboard_BIGR_winXP32_VS2008.cmake │ ├── elxDashboard_LKEB_linux64_clang_Debug.cmake │ ├── elxDashboard_LKEB_linux64_clang_Release.cmake │ ├── elxDashboard_LKEB_linux64_gcc_Debug.cmake │ ├── elxDashboard_LKEB_linux64_gcc_Release.cmake │ ├── elxDashboard_LKEB_linux64_gcc_Release_perf.cmake │ ├── elxDashboard_LKEB_macosx64_gcc.cmake │ ├── elxDashboard_LKEB_win10-64_VS2015.cmake │ └── elxDashboard_LKEB_win7-64_VS2010.cmake ├── Data │ ├── 2DMRI-T1_brain.mha │ ├── 2D_2x2_square_object_at_(1,3).mhd │ ├── 2D_2x2_square_object_at_(1,3).raw │ ├── 2D_2x2_square_object_at_(2,1).mhd │ ├── 2D_2x2_square_object_at_(2,1).raw │ ├── 2D_unit_square_corner_points.txt │ ├── 3DCT_lung_baseline.mha │ ├── 3DCT_lung_baseline.txt │ ├── 3DCT_lung_baseline_landmarks.txt │ ├── 3DCT_lung_baseline_mask.mha │ ├── 3DCT_lung_baseline_small.mha │ ├── 3DCT_lung_followup.mha │ ├── 3DCT_lung_followup.txt │ ├── 3DCT_lung_followup_mask.mha │ ├── 3DCT_lung_followup_segmentation.mha │ ├── Translation(1,-2) │ │ ├── ITK-HDF5-Transform.h5 │ │ ├── ITK-Transform.tfm │ │ ├── InitialTransformParameters.txt │ │ ├── Special characters [(0-9,;!@#$%&)] │ │ │ └── ITK-Transform.tfm │ │ ├── TransformParameters-Size-5x6.txt │ │ ├── TransformParameters-link-to-ITK-HDF5-file.txt │ │ ├── TransformParameters-link-to-ITK-tfm-file.txt │ │ ├── TransformParameters-link-to-file-with-special-chars-in-path-name.txt │ │ ├── TransformParameters.txt │ │ └── TransformParametersWithInitialTransformParameterFile.txt │ ├── parameters.2D.NC.translation.ASGD.txt │ ├── parameters.3D.Kappa.bspline.ASGD.001.txt │ ├── parameters.3D.MI.bspline.ASGD.001.txt │ ├── parameters.3D.MI.bspline.SGD.001.txt │ ├── parameters.3D.MI.bspline.SGD.002.txt │ ├── parameters.3D.MI.bspline.SGD.003.txt │ ├── parameters.3D.MI.bspline.SGD.004.txt │ ├── parameters.3D.NC.affine.ASGD.001.txt │ ├── parameters.3D.NC.affine.SGD.001.txt │ ├── parameters.3D.NC.bspline.ASGD.001.txt │ ├── parameters.3D.NC.bspline.ASGD.001a.txt │ ├── parameters.3D.NC.bspline.ASGD.001b.txt │ ├── parameters.3D.NC.bspline.ASGD.001c.txt │ ├── parameters.3D.NC.bspline.ASGD.001d.txt │ ├── parameters.3D.NC.bspline.ASGD.002.txt │ ├── parameters.3D.NC.bspline.ASGD.003.txt │ ├── parameters.3D.NC.bspline.ASGD.004.txt │ ├── parameters.3D.NC.bspline.ASGD.004b.txt.in │ ├── parameters.3D.NC.bspline.QN.001.txt │ ├── parameters.3D.NC.bspline.SGD.001.txt │ ├── parameters.3D.NC.bspline_r.ASGD.001a.txt │ ├── parameters.3D.NC.euler.ASGD.001.txt │ ├── parameters.3D.NC.translation.ASGD.001.txt │ ├── parameters.3D.NMI.bspline.ASGD.001.txt │ ├── parameters.3D.SSD.bspline.ASGD.001.txt │ ├── parameters.3D.SSD.bspline.ASGD.002.txt │ ├── parameters.3D.SSD.bspline.ASGD.003.txt │ ├── parameters_AdvancedBSplineDeformableTransformTest.txt │ ├── parameters_AdvancedBSplineDeformableTransformTestSml.txt │ ├── parameters_TPSTransformTest.txt │ └── transformparameters.3DCT_lung.affine.txt ├── OpenCLBufferTest.cl ├── OpenCLEventTest.cl ├── OpenCLImageTest.cl ├── OpenCLKernelToImageBridgeTest.cl ├── OpenCLSimpleTest1.cl ├── OpenCLSimpleTest2.cl ├── OpenCLVectorTest.cl ├── PythonTests │ ├── CMakeLists.txt │ ├── ExpectedOutput │ │ ├── test_translation_of_images_and_points │ │ │ └── outputpoints.txt │ │ └── test_translation_of_points │ │ │ └── outputpoints.txt │ ├── TransformParameters │ │ ├── Transform_to_float_5x6.txt │ │ ├── Transform_to_int_5x6.txt │ │ ├── Translation(0,0).txt │ │ ├── Translation(0,0,0).txt │ │ ├── Translation(1,-2)-CustomResultImageName.txt │ │ └── Translation(1,-2).txt │ ├── requirements.txt │ └── transformix_test.py ├── elxComputeOverlap.cxx ├── elxImageCompare.cxx ├── elxInvertTransform.cxx ├── elxTransformParametersCompare.cxx ├── elx_compare_checksum.py ├── elx_compare_finalmetricvalue.py ├── elx_compare_landmarks.py ├── elx_compare_overlap.py ├── elx_get_checksum_list.py ├── elx_get_tp_list.py ├── elx_nightly_dashboard.py ├── itkAccumulateDerivativesParallellizationTest.cxx ├── itkAdvanceOneStepParallellizationTest.cxx ├── itkAdvancedBSplineDeformableTransformTest.cxx ├── itkAdvancedLinearInterpolatorTest.cxx ├── itkAdvancedRecursiveBSplineTransformTest.cxx ├── itkBSplineDerivativeKernelFunctionTest.cxx ├── itkBSplineInterpolationDerivativeWeightFunctionTest.cxx ├── itkBSplineInterpolationSODerivativeWeightFunctionTest.cxx ├── itkBSplineInterpolationWeightFunctionTest.cxx ├── itkBSplineJacobianGradientPerformanceTest.cxx ├── itkBSplineSODerivativeKernelFunctionTest.cxx ├── itkBSplineSecondOrderDerivativeKernelFunction.h ├── itkBSplineTransformPointPerformanceTest.cxx ├── itkCommandLineArgumentParser.cxx ├── itkCommandLineArgumentParser.h ├── itkCompareCompositeTransformsTest.cxx ├── itkGPUBSplineDecompositionImageFilterTest.cxx ├── itkGPUCastImageFilterTest.cxx ├── itkGPUFactoriesTest.cxx ├── itkGPUGenericMultiResolutionPyramidImageFilterTest.cxx ├── itkGPURecursiveGaussianImageFilterTest.cxx ├── itkGPUResampleImageFilterTest.cxx ├── itkGPUShrinkImageFilterTest.cxx ├── itkGPUSmoothingRecursiveGaussianImageFilterTest.cxx ├── itkMevisDicomTiffImageIOTest.cxx ├── itkOpenCLBufferTest.cxx ├── itkOpenCLBufferTest.h ├── itkOpenCLContextTest.cxx ├── itkOpenCLDeviceTest.cxx ├── itkOpenCLEventTest.cxx ├── itkOpenCLEventTest.h ├── itkOpenCLImageTest.cxx ├── itkOpenCLImageTest.h ├── itkOpenCLKernelManagerTest.cxx ├── itkOpenCLKernelTest.cxx ├── itkOpenCLKernelToImageBridgeTest.cxx ├── itkOpenCLKernelToImageBridgeTest.h ├── itkOpenCLPlatformTest.cxx ├── itkOpenCLProfilingTimeProbeTest.cxx ├── itkOpenCLSamplerTest.cxx ├── itkOpenCLSimpleTest.cxx ├── itkOpenCLSimpleTest.h ├── itkOpenCLSizeTest.cxx ├── itkOpenCLStringUtilsTest.cxx ├── itkOpenCLVectorTest.cxx ├── itkOpenCLVectorTest.h ├── itkTestHelper.h ├── itkTestOutputWindow.cxx ├── itkTestOutputWindow.h ├── itkThinPlateSplineTransformPerformanceTest.cxx ├── itkThinPlateSplineTransformTest.cxx └── itkTransformixFilterTest.cxx ├── UseElastix.cmake.in ├── dox ├── ITKCompilationOptions.txt ├── README.txt ├── art │ ├── elastix_logo.gif │ ├── elastix_logo_128.ico │ ├── elastix_logo_32.ico │ ├── elastix_logo_64.ico │ ├── elastix_logo_full.bmp │ ├── elastix_logo_full.gif │ ├── elastix_logo_full_128.ico │ ├── elastix_logo_full_32.ico │ ├── elastix_logo_full_64.ico │ └── elastix_logo_full_small.bmp ├── createWebsite ├── doxygen │ ├── DoxygenFooter.html.in │ ├── DoxygenHeader.html │ ├── MainPage.dox.in │ ├── Topics.dox │ ├── doxdate.bat │ ├── doxyfile.in │ ├── doxygenlayout.xml │ └── elastix.css ├── example ├── example.bat ├── exampleinput │ ├── fixed.mhd │ ├── fixed.raw │ ├── mask_fixed.mhd │ ├── mask_fixed.raw │ ├── mask_moving.mhd │ ├── mask_moving.raw │ ├── moving.mhd │ ├── moving.raw │ ├── parameters_Affine.txt │ ├── parameters_BSpline.txt │ ├── parameters_Rigid.txt │ ├── parameters_Translation.txt │ ├── solution_deformedmovingimage.mhd │ └── solution_deformedmovingimage.raw ├── externalproject │ ├── CMakeLists.txt │ ├── ElastixTranslationExample.cxx │ └── README.txt └── misc │ ├── ReleaseCMakeSettings.txt │ └── penalty.tex ├── pixi.lock ├── 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