├── .bandit ├── .codacy.yml ├── .coveragerc-Gadgetron ├── .coveragerc-Reg ├── .coveragerc-STIR ├── .github ├── PULL_REQUEST_TEMPLATE.md └── workflows │ ├── build-test.yml │ └── cffconvert.yml ├── .gitignore ├── .gitmodules ├── .mailmap ├── .travis.yml ├── CHANGES.md ├── CITATION.cff ├── CMakeLists.txt ├── CONTRIBUTING.md ├── CREDITS.md ├── GPL.txt ├── INSTALL.txt ├── LICENSE.txt ├── NOTICE.txt ├── README.md ├── ci-requirements.txt ├── cmake ├── FindFFTW3.cmake ├── FindNiftyPET.cmake ├── FindSPM.cmake ├── SIRFConfig.cmake.in ├── SetC++Version.cmake ├── __init__.py.in ├── config.py.in ├── setup.py.cmake ├── setup.py.in ├── sirf.__init__.py.in └── version.h.in ├── doc ├── DeveloperGuide.md ├── ReleaseChecklist.md ├── SIRFLongTermPlan.md ├── UPDATE.md └── UserGuide.md ├── doxygen ├── CMakeLists.txt ├── Doxyfile.in ├── doxygengroups.h └── doxymain.h ├── examples ├── C++ │ ├── CMakeLists.txt │ ├── README.md │ └── example_using_sirf.cpp ├── Matlab │ ├── MR │ │ ├── Gadgetron │ │ │ ├── fully_sampled_recon_single_chain.m │ │ │ ├── fully_sampled_recon_two_chains.m │ │ │ ├── grappa_detail.m │ │ │ └── run_all.m │ │ ├── acquisition_data.m │ │ ├── acquisition_model.m │ │ ├── add_noise.m │ │ ├── fully_sampled_recon.m │ │ ├── generate_undersampled_data.m │ │ ├── grappa_and_steepest_descent.m │ │ ├── grappa_basic.m │ │ ├── image_data.m │ │ └── run_all.m │ ├── PET │ │ ├── acquisition_data.m │ │ ├── acquisition_data_from_scanner_info.m │ │ ├── acquisition_model.m │ │ ├── acquisition_sensitivity_from_attenuation.m │ │ ├── acquisition_sensitivity_from_ecat8.m │ │ ├── fbp2d_reconstruction.m │ │ ├── hkem_reconstruction.m │ │ ├── input_output.m │ │ ├── listmode_to_sinograms.m │ │ ├── my_osmaposl.m │ │ ├── osem_reconstruction.m │ │ ├── reconstruct_from_listmode.m │ │ ├── run_all.m │ │ ├── steepest_ascent.m │ │ └── user_osmaposl.m │ ├── PETMR │ │ └── simplistic_petmr.m │ ├── README.md │ └── Registration │ │ ├── sirf_registration.m │ │ └── sirf_resample.m ├── Python │ ├── MR │ │ ├── Gadgetron │ │ │ ├── GPU │ │ │ │ └── golden_radial_mode2_gpusense_cg.py │ │ │ ├── fully_sampled_recon_single_chain.py │ │ │ ├── fully_sampled_recon_single_chain_short.py │ │ │ ├── grappa_detail.py │ │ │ ├── recon_by_several_chains.py │ │ │ ├── run_all.py │ │ │ └── run_all.sh │ │ ├── README.md │ │ ├── acquisition_data.py │ │ ├── acquisition_model.py │ │ ├── coil_sensitivity_maps.py │ │ ├── data_views.py │ │ ├── fully_sampled_recon.py │ │ ├── grappa_and_steepest_descent.py │ │ ├── grappa_basic.py │ │ ├── mr_timings.py │ │ ├── noncartesian_cg_sense.py │ │ ├── noncartesian_recon.py │ │ └── run_all.py │ ├── PET │ │ ├── PET_plot_functions.py │ │ ├── README.md │ │ ├── STIR_acquisition_model_using_raytracing.py │ │ ├── acquisition_data.py │ │ ├── acquisition_data_from_scanner_info.py │ │ ├── acquisition_model.py │ │ ├── acquisition_sensitivity_from_attenuation.py │ │ ├── acquisition_sensitivity_from_bin_efficiencies.py │ │ ├── acquisition_sensitivity_from_ecat8.py │ │ ├── asarray.py │ │ ├── fbp2d_reconstruction.py │ │ ├── generate_noisy_data.py │ │ ├── get_multiplicative_sinogram.py │ │ ├── hkem_reconstruction.py │ │ ├── input_output.py │ │ ├── listmode_reconstruction.py │ │ ├── listmode_to_sinograms.py │ │ ├── osem_reconstruction.py │ │ ├── osem_reconstruction_gpu.py │ │ ├── osl_reconstruction.py │ │ ├── ossps_reconstruction.py │ │ ├── plot_measured_data.py │ │ ├── randoms_from_listmode.py │ │ ├── reconstruct_from_listmode.py │ │ ├── run_all.py │ │ ├── scatter_estimation.py │ │ ├── scatter_simulation.py │ │ ├── steepest_ascent.py │ │ └── user_osmaposl.py │ ├── PETMR │ │ ├── README.md │ │ ├── generate_MCIR_data.py │ │ └── simplistic_petmr.py │ ├── README.md │ ├── Registration │ │ ├── README.md │ │ ├── sirf_registration.py │ │ └── sirf_resample.py │ ├── SPECT │ │ ├── README.md │ │ ├── SPECT_OSEM.py │ │ ├── acquisition_model.py │ │ └── interactive │ │ │ ├── basic_reconstruction.py │ │ │ └── display_and_projection.py │ ├── acquisitions_algebra_timings.py │ └── images_algebra_timings.py ├── README.md └── parameter_files │ ├── STIR_output_file_format_nifti.par │ ├── scatter_estimation.par │ └── scatter_template.hs ├── requirements.txt ├── src ├── CMakeLists.txt ├── Registration │ ├── CMakeLists.txt │ ├── NiftyMoMo │ │ ├── BSplineTransformation.cpp │ │ ├── CMakeLists.txt │ │ ├── Transformation.cpp │ │ └── include │ │ │ └── sirf │ │ │ └── NiftyMoMo │ │ │ ├── BSplineTransformation.h │ │ │ └── Transformation.h │ ├── cReg │ │ ├── AffineTransformation.cpp │ │ ├── CMakeLists.txt │ │ ├── ImageWeightedMean.cpp │ │ ├── NiftiBasedRegistration.cpp │ │ ├── NiftiImageData.cpp │ │ ├── NiftiImageData3D.cpp │ │ ├── NiftiImageData3DDeformation.cpp │ │ ├── NiftiImageData3DDisplacement.cpp │ │ ├── NiftiImageData3DTensor.cpp │ │ ├── NiftyAladinSym.cpp │ │ ├── NiftyF3dSym.cpp │ │ ├── NiftyRegistration.cpp │ │ ├── NiftyResampler.cpp │ │ ├── Quaternion.cpp │ │ ├── Registration.cpp │ │ ├── Resample.cpp │ │ ├── SPMRegistration.cpp │ │ ├── Transformation.cpp │ │ ├── cReg.cpp │ │ ├── cReg_p.cpp │ │ ├── include │ │ │ └── sirf │ │ │ │ └── Reg │ │ │ │ ├── AffineTransformation.h │ │ │ │ ├── ImageWeightedMean.h │ │ │ │ ├── NiftiBasedRegistration.h │ │ │ │ ├── NiftiImageData.h │ │ │ │ ├── NiftiImageData3D.h │ │ │ │ ├── NiftiImageData3DDeformation.h │ │ │ │ ├── NiftiImageData3DDisplacement.h │ │ │ │ ├── NiftiImageData3DTensor.h │ │ │ │ ├── NiftyAladinSym.h │ │ │ │ ├── NiftyF3dSym.h │ │ │ │ ├── NiftyRegistration.h │ │ │ │ ├── NiftyResample.h │ │ │ │ ├── NiftyResampler.h │ │ │ │ ├── NonRigidTransformation.h │ │ │ │ ├── Parser.h │ │ │ │ ├── ParserKey.h │ │ │ │ ├── Quaternion.h │ │ │ │ ├── Registration.h │ │ │ │ ├── Resample.h │ │ │ │ ├── SPMRegistration.h │ │ │ │ ├── Transformation.h │ │ │ │ ├── cReg.h │ │ │ │ └── cReg_p.h │ │ ├── sirf_affine_to_disp.cpp │ │ ├── sirf_change_datatype.cpp │ │ ├── sirf_crop_image.cpp │ │ ├── sirf_flip_or_mirror_image.cpp │ │ ├── sirf_inverse_transform.cpp │ │ ├── sirf_nifti_maths.cpp │ │ ├── sirf_print_nifti_info.cpp │ │ ├── sirf_tensor_split_join.cpp │ │ └── tests │ │ │ ├── CMakeLists.txt │ │ │ └── test_cReg.cpp │ ├── mReg │ │ ├── +sirf │ │ │ └── +Reg │ │ │ │ ├── AffineTransformation.m │ │ │ │ ├── ImageData.m │ │ │ │ ├── ImageWeightedMean.m │ │ │ │ ├── NiftiImageData.m │ │ │ │ ├── NiftiImageData3D.m │ │ │ │ ├── NiftiImageData3DDeformation.m │ │ │ │ ├── NiftiImageData3DDisplacement.m │ │ │ │ ├── NiftiImageData3DTensor.m │ │ │ │ ├── NiftyAladinSym.m │ │ │ │ ├── NiftyF3dSym.m │ │ │ │ ├── NiftyRegistration.m │ │ │ │ ├── NiftyResampler.m │ │ │ │ ├── Quaternion.m │ │ │ │ ├── Registration.m │ │ │ │ ├── SPMRegistration.m │ │ │ │ ├── Transformation.m │ │ │ │ ├── parameter.m │ │ │ │ └── setParameter.m │ │ ├── CMakeLists.txt │ │ ├── gmi │ │ │ └── gmi_xreg.cpp │ │ ├── libload_reg.m │ │ ├── printer.cpp │ │ ├── printer.h │ │ └── tests │ │ │ ├── CMakeLists.txt │ │ │ ├── test_mReg.m │ │ │ └── test_mReg_spm.m │ └── pReg │ │ ├── CMakeLists.txt │ │ ├── Reg.py │ │ ├── Reg_params.py │ │ ├── pyreg.i │ │ └── tests │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── test_algebra.py │ │ ├── test_pReg.py │ │ ├── test_pReg_spm.py │ │ ├── tests_data_container_algebra.py │ │ ├── tests_data_container_algebra.txt │ │ ├── tests_view.py │ │ └── tests_view.txt ├── Synergistic │ ├── CMakeLists.txt │ ├── cSyn │ │ ├── CMakeLists.txt │ │ ├── include │ │ │ └── sirf │ │ │ │ └── Syn │ │ │ │ └── utilities.h │ │ ├── tests │ │ │ ├── CMakeLists.txt │ │ │ └── test_conv_img.cpp │ │ └── utilities.cpp │ ├── mSyn │ │ ├── CMakeLists.txt │ │ └── tests │ │ │ ├── CMakeLists.txt │ │ │ ├── gadgetron_to_nifti.m │ │ │ └── stir_to_nifti.m │ ├── pSyn │ │ ├── CMakeLists.txt │ │ └── tests │ │ │ ├── CMakeLists.txt │ │ │ └── tests_syn.py │ ├── sirf_convert_image_type.cpp │ ├── sirf_do_images_match.cpp │ ├── sirf_registration.cpp │ ├── sirf_resample.cpp │ └── tests │ │ ├── CMakeLists.txt │ │ ├── test_cSynergistic.cpp │ │ ├── test_mSynergistic.m │ │ └── test_pSynergistic.py ├── common │ ├── +sirf │ │ ├── +SIRF │ │ │ ├── DataContainer.m │ │ │ ├── DataHandleVector.m │ │ │ ├── GeometricalInfo.m │ │ │ └── ImageData.m │ │ └── +Utilities │ │ │ ├── assert_validities.m │ │ │ ├── assert_validity.m │ │ │ ├── check_status.m │ │ │ ├── class_name.m │ │ │ ├── delete.m │ │ │ ├── label_and_name.m │ │ │ ├── mTest.m │ │ │ ├── name_and_parameters.m │ │ │ ├── parameter.m │ │ │ ├── run_all_scripts.m │ │ │ ├── set_parameter.m │ │ │ ├── set_window.m │ │ │ ├── show_2D_array.m │ │ │ ├── show_3D_array.m │ │ │ └── str_to_int_list.m │ ├── CMakeLists.txt │ ├── GeometricalInfo.cpp │ ├── ImageData.cpp │ ├── SIRF.py │ ├── Utilities.py │ ├── csirf.cpp │ ├── examples_data_path.m.in │ ├── gmi │ │ └── gmi_csirf.cpp │ ├── iequals.cpp │ ├── include │ │ └── sirf │ │ │ ├── Syn │ │ │ └── utilities.h │ │ │ └── common │ │ │ ├── ANumRef.h │ │ │ ├── DataContainer.h │ │ │ ├── GeometricalInfo.h │ │ │ ├── ImageData.h │ │ │ ├── JacobiCG.h │ │ │ ├── Operator.h │ │ │ ├── csirf.h │ │ │ ├── deprecate.h │ │ │ ├── getenv.h │ │ │ ├── iequals.h │ │ │ ├── multisort.h │ │ │ └── utilities.h │ ├── libload_sirf.m │ ├── mig.cpp │ ├── pysirf.i │ ├── select_module.py │ ├── set_up_MR.m │ ├── set_up_PET.m │ ├── set_up_Reg.m │ ├── set_up_engine.m │ ├── show_image.py │ ├── syn_utilities.cpp │ ├── tests │ │ ├── CMakeLists.txt │ │ └── test_version.cpp │ ├── utilities.cpp │ ├── version.m.in │ ├── version_major.m.in │ ├── version_minor.m.in │ └── version_patch.m.in ├── iUtilities │ ├── .gitignore │ ├── CMakeLists.txt │ ├── gmi │ │ └── gmi.cpp │ ├── include │ │ └── sirf │ │ │ └── iUtilities │ │ │ ├── DataHandle.h │ │ │ ├── LocalisedException.h │ │ │ └── iutilities.h │ ├── iutilities.cpp │ └── pyiutilities.i ├── xGadgetron │ ├── .gitignore │ ├── CMakeLists.txt │ ├── cGadgetron │ │ ├── CMakeLists.txt │ │ ├── FourierEncoding.cpp │ │ ├── NonCartesianEncoding.cpp │ │ ├── TrajectoryPreparation.cpp │ │ ├── cgadgetron.cpp │ │ ├── gadgetron_client.cpp │ │ ├── gadgetron_data_containers.cpp │ │ ├── gadgetron_fftw.cpp │ │ ├── gadgetron_x.cpp │ │ ├── include │ │ │ └── sirf │ │ │ │ └── Gadgetron │ │ │ │ ├── FourierEncoding.h │ │ │ │ ├── NonCartesianEncoding.h │ │ │ │ ├── TrajectoryPreparation.h │ │ │ │ ├── cgadgetron.h │ │ │ │ ├── cgadgetron_p.h │ │ │ │ ├── cgadgetron_shared_ptr.h │ │ │ │ ├── chain_lib.h │ │ │ │ ├── gadget_lib.h │ │ │ │ ├── gadgetron_client.h │ │ │ │ ├── gadgetron_data_containers.h │ │ │ │ ├── gadgetron_image_wrap.h │ │ │ │ ├── gadgetron_x.h │ │ │ │ └── xgadgetron_utilities.h │ │ └── tests │ │ │ ├── CMakeLists.txt │ │ │ ├── mrtest_auxiliary_funs.cpp │ │ │ ├── mrtest_auxiliary_funs.h │ │ │ ├── mrtests.cpp │ │ │ └── mrtests_prep_testdata.cpp │ ├── mGadgetron │ │ ├── +sirf │ │ │ └── +Gadgetron │ │ │ │ ├── Acquisition.m │ │ │ │ ├── AcquisitionData.m │ │ │ │ ├── AcquisitionDataProcessor.m │ │ │ │ ├── AcquisitionModel.m │ │ │ │ ├── CartesianGRAPPAReconstructor.m │ │ │ │ ├── ClientConnector.m │ │ │ │ ├── CoilSensitivityData.m │ │ │ │ ├── FullySampledCartesianReconstructor.m │ │ │ │ ├── Gadget.m │ │ │ │ ├── GadgetChain.m │ │ │ │ ├── Image.m │ │ │ │ ├── ImageData.m │ │ │ │ ├── ImageDataProcessor.m │ │ │ │ ├── Reconstructor.m │ │ │ │ ├── parameter.m │ │ │ │ └── preprocess_acquisition_data.m │ │ ├── CMakeLists.txt │ │ ├── gmi │ │ │ └── gmi_xgadgetron.cpp │ │ ├── libload_gadgetron.m │ │ └── tests │ │ │ ├── CMakeLists.txt │ │ │ ├── test1.m │ │ │ ├── test1.txt │ │ │ ├── test2.m │ │ │ ├── test2.txt │ │ │ └── test_all.m │ └── pGadgetron │ │ ├── CMakeLists.txt │ │ ├── Gadgetron.py │ │ ├── Gadgetron_params.py │ │ ├── pygadgetron.i │ │ └── tests │ │ ├── CMakeLists.txt │ │ ├── pytest.ini │ │ ├── test1.py │ │ ├── test1.txt │ │ ├── test2.py │ │ ├── test2.txt │ │ ├── test3.py │ │ ├── test3.txt │ │ ├── test4.py │ │ ├── test4.txt │ │ ├── test_acq_hdr_idx_setters.py │ │ ├── test_algebra.py │ │ ├── test_all.py │ │ ├── test_imagedata_constructor.py │ │ ├── tests_data_container_algebra.py │ │ ├── tests_data_container_algebra.txt │ │ ├── tests_view.py │ │ └── tests_view.txt └── xSTIR │ ├── .gitattributes │ ├── .gitignore │ ├── CMakeLists.txt │ ├── cSTIR │ ├── CMakeLists.txt │ ├── cstir.cpp │ ├── cstir_p.cpp │ ├── cstir_tw.cpp │ ├── include │ │ └── sirf │ │ │ └── STIR │ │ │ ├── cstir.h │ │ │ ├── cstir_p.h │ │ │ ├── stir_data_containers.h │ │ │ ├── stir_types.h │ │ │ └── stir_x.h │ ├── stir_data_containers.cpp │ ├── stir_x.cpp │ └── tests │ │ ├── CMakeLists.txt │ │ ├── envar.h │ │ ├── getenv.h │ │ ├── handle.h │ │ ├── main.cpp │ │ ├── object.h │ │ ├── run_test4.cpp │ │ ├── run_test6.cpp │ │ ├── test1.cpp │ │ ├── test2.cpp │ │ ├── test3.cpp │ │ ├── test4.cpp │ │ ├── test5.cpp │ │ ├── test6.cpp │ │ ├── test7.cpp │ │ └── tests.h │ ├── mSTIR │ ├── +sirf │ │ └── +STIR │ │ │ ├── AcquisitionData.m │ │ │ ├── AcquisitionModel.m │ │ │ ├── AcquisitionModelUsingMatrix.m │ │ │ ├── AcquisitionModelUsingRayTracingMatrix.m │ │ │ ├── AcquisitionSensitivityModel.m │ │ │ ├── EllipticCylinder.m │ │ │ ├── FBP2DReconstructor.m │ │ │ ├── ImageData.m │ │ │ ├── ImageDataProcessor.m │ │ │ ├── IterativeReconstructor.m │ │ │ ├── KOSMAPOSLReconstructor.m │ │ │ ├── ListmodeToSinograms.m │ │ │ ├── MessageRedirector.m │ │ │ ├── OSMAPOSLReconstructor.m │ │ │ ├── ObjectiveFunction.m │ │ │ ├── PoissonLogLikelihoodWithLinearModelForMean.m │ │ │ ├── PoissonLogLikelihoodWithLinearModelForMeanAndProjData.m │ │ │ ├── Prior.m │ │ │ ├── QuadraticPrior.m │ │ │ ├── RayTracingMatrix.m │ │ │ ├── Reconstructor.m │ │ │ ├── Shape.m │ │ │ ├── TruncateToCylinderProcessor.m │ │ │ ├── make_Poisson_loglikelihood.m │ │ │ ├── parameter.m │ │ │ └── setParameter.m │ ├── CMakeLists.txt │ ├── gmi │ │ └── gmi_xstir.cpp │ ├── libload_stir.m │ ├── printer.cpp │ ├── printer.h │ └── tests │ │ ├── CMakeLists.txt │ │ ├── test1.m │ │ ├── test1.txt │ │ ├── test_all.m │ │ └── test_listmode.m │ └── pSTIR │ ├── CMakeLists.txt │ ├── STIR.py │ ├── STIR_params.py │ ├── pystir.i │ └── tests │ ├── CMakeLists.txt │ ├── pytest.ini │ ├── test_ObjectiveFunction.py │ ├── test_algebra.py │ ├── test_all.py │ ├── test_six_adjoint.py │ ├── tests_NiftyPET.py │ ├── tests_asarray.py │ ├── tests_asarray.txt │ ├── tests_data_container_algebra.py │ ├── tests_data_container_algebra.txt │ ├── tests_five.py │ ├── tests_five.txt │ ├── tests_four.py │ ├── tests_four.txt │ ├── tests_listmode.py │ ├── tests_one.py │ ├── tests_one.txt │ ├── tests_qp_lc_rdp.py │ ├── tests_qp_lc_rdp.txt │ ├── tests_scatter.py │ ├── tests_three.py │ ├── tests_three.txt │ ├── tests_two.py │ ├── tests_two.txt │ ├── tests_view.py │ └── tests_view.txt └── tests ├── NiftyPET_test.sh └── README.md /.bandit: -------------------------------------------------------------------------------- 1 | skips: 2 | - "B101" # warning about assert -------------------------------------------------------------------------------- /.codacy.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.codacy.yml -------------------------------------------------------------------------------- /.coveragerc-Gadgetron: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.coveragerc-Gadgetron -------------------------------------------------------------------------------- /.coveragerc-Reg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.coveragerc-Reg -------------------------------------------------------------------------------- /.coveragerc-STIR: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.coveragerc-STIR -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.github/PULL_REQUEST_TEMPLATE.md -------------------------------------------------------------------------------- /.github/workflows/build-test.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.github/workflows/build-test.yml -------------------------------------------------------------------------------- /.github/workflows/cffconvert.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.github/workflows/cffconvert.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.gitmodules -------------------------------------------------------------------------------- /.mailmap: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.mailmap -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/.travis.yml -------------------------------------------------------------------------------- /CHANGES.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/CHANGES.md -------------------------------------------------------------------------------- /CITATION.cff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/CITATION.cff -------------------------------------------------------------------------------- /CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/CMakeLists.txt -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /CREDITS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/CREDITS.md -------------------------------------------------------------------------------- /GPL.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/GPL.txt -------------------------------------------------------------------------------- /INSTALL.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/INSTALL.txt -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /NOTICE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/NOTICE.txt -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/README.md -------------------------------------------------------------------------------- /ci-requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/ci-requirements.txt -------------------------------------------------------------------------------- /cmake/FindFFTW3.cmake: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/cmake/FindFFTW3.cmake -------------------------------------------------------------------------------- /cmake/FindNiftyPET.cmake: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/cmake/FindNiftyPET.cmake -------------------------------------------------------------------------------- /cmake/FindSPM.cmake: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/cmake/FindSPM.cmake -------------------------------------------------------------------------------- /cmake/SIRFConfig.cmake.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/cmake/SIRFConfig.cmake.in -------------------------------------------------------------------------------- /cmake/SetC++Version.cmake: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/cmake/SetC++Version.cmake -------------------------------------------------------------------------------- /cmake/__init__.py.in: -------------------------------------------------------------------------------- 1 | from ${PY_PKG_OLD} import * 2 | -------------------------------------------------------------------------------- /cmake/config.py.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/cmake/config.py.in -------------------------------------------------------------------------------- /cmake/setup.py.cmake: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/cmake/setup.py.cmake -------------------------------------------------------------------------------- /cmake/setup.py.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/cmake/setup.py.in -------------------------------------------------------------------------------- /cmake/sirf.__init__.py.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/cmake/sirf.__init__.py.in -------------------------------------------------------------------------------- /cmake/version.h.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/cmake/version.h.in -------------------------------------------------------------------------------- /doc/DeveloperGuide.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/doc/DeveloperGuide.md -------------------------------------------------------------------------------- /doc/ReleaseChecklist.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/doc/ReleaseChecklist.md -------------------------------------------------------------------------------- /doc/SIRFLongTermPlan.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/doc/SIRFLongTermPlan.md -------------------------------------------------------------------------------- /doc/UPDATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/doc/UPDATE.md -------------------------------------------------------------------------------- /doc/UserGuide.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/doc/UserGuide.md -------------------------------------------------------------------------------- /doxygen/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/doxygen/CMakeLists.txt -------------------------------------------------------------------------------- /doxygen/Doxyfile.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/doxygen/Doxyfile.in -------------------------------------------------------------------------------- /doxygen/doxygengroups.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/doxygen/doxygengroups.h -------------------------------------------------------------------------------- /doxygen/doxymain.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/doxygen/doxymain.h -------------------------------------------------------------------------------- /examples/C++/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/C++/CMakeLists.txt -------------------------------------------------------------------------------- /examples/C++/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/C++/README.md -------------------------------------------------------------------------------- /examples/C++/example_using_sirf.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/C++/example_using_sirf.cpp -------------------------------------------------------------------------------- /examples/Matlab/MR/Gadgetron/fully_sampled_recon_single_chain.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/Gadgetron/fully_sampled_recon_single_chain.m -------------------------------------------------------------------------------- /examples/Matlab/MR/Gadgetron/fully_sampled_recon_two_chains.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/Gadgetron/fully_sampled_recon_two_chains.m -------------------------------------------------------------------------------- /examples/Matlab/MR/Gadgetron/grappa_detail.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/Gadgetron/grappa_detail.m -------------------------------------------------------------------------------- /examples/Matlab/MR/Gadgetron/run_all.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/Gadgetron/run_all.m -------------------------------------------------------------------------------- /examples/Matlab/MR/acquisition_data.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/acquisition_data.m -------------------------------------------------------------------------------- /examples/Matlab/MR/acquisition_model.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/acquisition_model.m -------------------------------------------------------------------------------- /examples/Matlab/MR/add_noise.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/add_noise.m -------------------------------------------------------------------------------- /examples/Matlab/MR/fully_sampled_recon.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/fully_sampled_recon.m -------------------------------------------------------------------------------- /examples/Matlab/MR/generate_undersampled_data.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/generate_undersampled_data.m -------------------------------------------------------------------------------- /examples/Matlab/MR/grappa_and_steepest_descent.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/grappa_and_steepest_descent.m -------------------------------------------------------------------------------- /examples/Matlab/MR/grappa_basic.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/grappa_basic.m -------------------------------------------------------------------------------- /examples/Matlab/MR/image_data.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/image_data.m -------------------------------------------------------------------------------- /examples/Matlab/MR/run_all.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/MR/run_all.m -------------------------------------------------------------------------------- /examples/Matlab/PET/acquisition_data.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/acquisition_data.m -------------------------------------------------------------------------------- /examples/Matlab/PET/acquisition_data_from_scanner_info.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/acquisition_data_from_scanner_info.m -------------------------------------------------------------------------------- /examples/Matlab/PET/acquisition_model.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/acquisition_model.m -------------------------------------------------------------------------------- /examples/Matlab/PET/acquisition_sensitivity_from_attenuation.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/acquisition_sensitivity_from_attenuation.m -------------------------------------------------------------------------------- /examples/Matlab/PET/acquisition_sensitivity_from_ecat8.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/acquisition_sensitivity_from_ecat8.m -------------------------------------------------------------------------------- /examples/Matlab/PET/fbp2d_reconstruction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/fbp2d_reconstruction.m -------------------------------------------------------------------------------- /examples/Matlab/PET/hkem_reconstruction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/hkem_reconstruction.m -------------------------------------------------------------------------------- /examples/Matlab/PET/input_output.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/input_output.m -------------------------------------------------------------------------------- /examples/Matlab/PET/listmode_to_sinograms.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/listmode_to_sinograms.m -------------------------------------------------------------------------------- /examples/Matlab/PET/my_osmaposl.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/my_osmaposl.m -------------------------------------------------------------------------------- /examples/Matlab/PET/osem_reconstruction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/osem_reconstruction.m -------------------------------------------------------------------------------- /examples/Matlab/PET/reconstruct_from_listmode.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/reconstruct_from_listmode.m -------------------------------------------------------------------------------- /examples/Matlab/PET/run_all.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/run_all.m -------------------------------------------------------------------------------- /examples/Matlab/PET/steepest_ascent.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/steepest_ascent.m -------------------------------------------------------------------------------- /examples/Matlab/PET/user_osmaposl.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PET/user_osmaposl.m -------------------------------------------------------------------------------- /examples/Matlab/PETMR/simplistic_petmr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/PETMR/simplistic_petmr.m -------------------------------------------------------------------------------- /examples/Matlab/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/README.md -------------------------------------------------------------------------------- /examples/Matlab/Registration/sirf_registration.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/Registration/sirf_registration.m -------------------------------------------------------------------------------- /examples/Matlab/Registration/sirf_resample.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Matlab/Registration/sirf_resample.m -------------------------------------------------------------------------------- /examples/Python/MR/Gadgetron/GPU/golden_radial_mode2_gpusense_cg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/Gadgetron/GPU/golden_radial_mode2_gpusense_cg.py -------------------------------------------------------------------------------- /examples/Python/MR/Gadgetron/fully_sampled_recon_single_chain.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/Gadgetron/fully_sampled_recon_single_chain.py -------------------------------------------------------------------------------- /examples/Python/MR/Gadgetron/fully_sampled_recon_single_chain_short.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/Gadgetron/fully_sampled_recon_single_chain_short.py -------------------------------------------------------------------------------- /examples/Python/MR/Gadgetron/grappa_detail.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/Gadgetron/grappa_detail.py -------------------------------------------------------------------------------- /examples/Python/MR/Gadgetron/recon_by_several_chains.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/Gadgetron/recon_by_several_chains.py -------------------------------------------------------------------------------- /examples/Python/MR/Gadgetron/run_all.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/Gadgetron/run_all.py -------------------------------------------------------------------------------- /examples/Python/MR/Gadgetron/run_all.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | python run_all.py 3 | -------------------------------------------------------------------------------- /examples/Python/MR/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/README.md -------------------------------------------------------------------------------- /examples/Python/MR/acquisition_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/acquisition_data.py -------------------------------------------------------------------------------- /examples/Python/MR/acquisition_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/acquisition_model.py -------------------------------------------------------------------------------- /examples/Python/MR/coil_sensitivity_maps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/coil_sensitivity_maps.py -------------------------------------------------------------------------------- /examples/Python/MR/data_views.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/data_views.py -------------------------------------------------------------------------------- /examples/Python/MR/fully_sampled_recon.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/fully_sampled_recon.py -------------------------------------------------------------------------------- /examples/Python/MR/grappa_and_steepest_descent.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/grappa_and_steepest_descent.py -------------------------------------------------------------------------------- /examples/Python/MR/grappa_basic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/grappa_basic.py -------------------------------------------------------------------------------- /examples/Python/MR/mr_timings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/mr_timings.py -------------------------------------------------------------------------------- /examples/Python/MR/noncartesian_cg_sense.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/noncartesian_cg_sense.py -------------------------------------------------------------------------------- /examples/Python/MR/noncartesian_recon.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/noncartesian_recon.py -------------------------------------------------------------------------------- /examples/Python/MR/run_all.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/MR/run_all.py -------------------------------------------------------------------------------- /examples/Python/PET/PET_plot_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/PET_plot_functions.py -------------------------------------------------------------------------------- /examples/Python/PET/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/README.md -------------------------------------------------------------------------------- /examples/Python/PET/STIR_acquisition_model_using_raytracing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/STIR_acquisition_model_using_raytracing.py -------------------------------------------------------------------------------- /examples/Python/PET/acquisition_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/acquisition_data.py -------------------------------------------------------------------------------- /examples/Python/PET/acquisition_data_from_scanner_info.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/acquisition_data_from_scanner_info.py -------------------------------------------------------------------------------- /examples/Python/PET/acquisition_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/acquisition_model.py -------------------------------------------------------------------------------- /examples/Python/PET/acquisition_sensitivity_from_attenuation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/acquisition_sensitivity_from_attenuation.py -------------------------------------------------------------------------------- /examples/Python/PET/acquisition_sensitivity_from_bin_efficiencies.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/acquisition_sensitivity_from_bin_efficiencies.py -------------------------------------------------------------------------------- /examples/Python/PET/acquisition_sensitivity_from_ecat8.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/acquisition_sensitivity_from_ecat8.py -------------------------------------------------------------------------------- /examples/Python/PET/asarray.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/asarray.py -------------------------------------------------------------------------------- /examples/Python/PET/fbp2d_reconstruction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/fbp2d_reconstruction.py -------------------------------------------------------------------------------- /examples/Python/PET/generate_noisy_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/generate_noisy_data.py -------------------------------------------------------------------------------- /examples/Python/PET/get_multiplicative_sinogram.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/get_multiplicative_sinogram.py -------------------------------------------------------------------------------- /examples/Python/PET/hkem_reconstruction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/hkem_reconstruction.py -------------------------------------------------------------------------------- /examples/Python/PET/input_output.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/input_output.py -------------------------------------------------------------------------------- /examples/Python/PET/listmode_reconstruction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/listmode_reconstruction.py -------------------------------------------------------------------------------- /examples/Python/PET/listmode_to_sinograms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/listmode_to_sinograms.py -------------------------------------------------------------------------------- /examples/Python/PET/osem_reconstruction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/osem_reconstruction.py -------------------------------------------------------------------------------- /examples/Python/PET/osem_reconstruction_gpu.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/osem_reconstruction_gpu.py -------------------------------------------------------------------------------- /examples/Python/PET/osl_reconstruction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/osl_reconstruction.py -------------------------------------------------------------------------------- /examples/Python/PET/ossps_reconstruction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/ossps_reconstruction.py -------------------------------------------------------------------------------- /examples/Python/PET/plot_measured_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/plot_measured_data.py -------------------------------------------------------------------------------- /examples/Python/PET/randoms_from_listmode.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/randoms_from_listmode.py -------------------------------------------------------------------------------- /examples/Python/PET/reconstruct_from_listmode.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/reconstruct_from_listmode.py -------------------------------------------------------------------------------- /examples/Python/PET/run_all.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/run_all.py -------------------------------------------------------------------------------- /examples/Python/PET/scatter_estimation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/scatter_estimation.py -------------------------------------------------------------------------------- /examples/Python/PET/scatter_simulation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/scatter_simulation.py -------------------------------------------------------------------------------- /examples/Python/PET/steepest_ascent.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/steepest_ascent.py -------------------------------------------------------------------------------- /examples/Python/PET/user_osmaposl.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PET/user_osmaposl.py -------------------------------------------------------------------------------- /examples/Python/PETMR/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PETMR/README.md -------------------------------------------------------------------------------- /examples/Python/PETMR/generate_MCIR_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PETMR/generate_MCIR_data.py -------------------------------------------------------------------------------- /examples/Python/PETMR/simplistic_petmr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/PETMR/simplistic_petmr.py -------------------------------------------------------------------------------- /examples/Python/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/README.md -------------------------------------------------------------------------------- /examples/Python/Registration/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/Registration/README.md -------------------------------------------------------------------------------- /examples/Python/Registration/sirf_registration.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/Registration/sirf_registration.py -------------------------------------------------------------------------------- /examples/Python/Registration/sirf_resample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/Registration/sirf_resample.py -------------------------------------------------------------------------------- /examples/Python/SPECT/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/SPECT/README.md -------------------------------------------------------------------------------- /examples/Python/SPECT/SPECT_OSEM.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/SPECT/SPECT_OSEM.py -------------------------------------------------------------------------------- /examples/Python/SPECT/acquisition_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/SPECT/acquisition_model.py -------------------------------------------------------------------------------- /examples/Python/SPECT/interactive/basic_reconstruction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/SPECT/interactive/basic_reconstruction.py -------------------------------------------------------------------------------- /examples/Python/SPECT/interactive/display_and_projection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/SPECT/interactive/display_and_projection.py -------------------------------------------------------------------------------- /examples/Python/acquisitions_algebra_timings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/acquisitions_algebra_timings.py -------------------------------------------------------------------------------- /examples/Python/images_algebra_timings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/Python/images_algebra_timings.py -------------------------------------------------------------------------------- /examples/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/README.md -------------------------------------------------------------------------------- /examples/parameter_files/STIR_output_file_format_nifti.par: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/parameter_files/STIR_output_file_format_nifti.par -------------------------------------------------------------------------------- /examples/parameter_files/scatter_estimation.par: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/parameter_files/scatter_estimation.par -------------------------------------------------------------------------------- /examples/parameter_files/scatter_template.hs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/examples/parameter_files/scatter_template.hs -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/requirements.txt -------------------------------------------------------------------------------- /src/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/CMakeLists.txt -------------------------------------------------------------------------------- /src/Registration/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/CMakeLists.txt -------------------------------------------------------------------------------- /src/Registration/NiftyMoMo/BSplineTransformation.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/NiftyMoMo/BSplineTransformation.cpp -------------------------------------------------------------------------------- /src/Registration/NiftyMoMo/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/NiftyMoMo/CMakeLists.txt -------------------------------------------------------------------------------- /src/Registration/NiftyMoMo/Transformation.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/NiftyMoMo/Transformation.cpp -------------------------------------------------------------------------------- /src/Registration/NiftyMoMo/include/sirf/NiftyMoMo/BSplineTransformation.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/NiftyMoMo/include/sirf/NiftyMoMo/BSplineTransformation.h -------------------------------------------------------------------------------- /src/Registration/NiftyMoMo/include/sirf/NiftyMoMo/Transformation.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/NiftyMoMo/include/sirf/NiftyMoMo/Transformation.h -------------------------------------------------------------------------------- /src/Registration/cReg/AffineTransformation.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/AffineTransformation.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/CMakeLists.txt -------------------------------------------------------------------------------- /src/Registration/cReg/ImageWeightedMean.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/ImageWeightedMean.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/NiftiBasedRegistration.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/NiftiBasedRegistration.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/NiftiImageData.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/NiftiImageData.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/NiftiImageData3D.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/NiftiImageData3D.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/NiftiImageData3DDeformation.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/NiftiImageData3DDeformation.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/NiftiImageData3DDisplacement.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/NiftiImageData3DDisplacement.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/NiftiImageData3DTensor.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/NiftiImageData3DTensor.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/NiftyAladinSym.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/NiftyAladinSym.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/NiftyF3dSym.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/NiftyF3dSym.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/NiftyRegistration.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/NiftyRegistration.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/NiftyResampler.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/NiftyResampler.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/Quaternion.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/Quaternion.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/Registration.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/Registration.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/Resample.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/Resample.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/SPMRegistration.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/SPMRegistration.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/Transformation.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/Transformation.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/cReg.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/cReg.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/cReg_p.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/cReg_p.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/AffineTransformation.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/AffineTransformation.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/ImageWeightedMean.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/ImageWeightedMean.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftiBasedRegistration.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftiBasedRegistration.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftiImageData.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftiImageData.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftiImageData3D.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftiImageData3D.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftiImageData3DDeformation.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftiImageData3DDeformation.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftiImageData3DDisplacement.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftiImageData3DDisplacement.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftiImageData3DTensor.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftiImageData3DTensor.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftyAladinSym.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftyAladinSym.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftyF3dSym.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftyF3dSym.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftyRegistration.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftyRegistration.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftyResample.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftyResample.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NiftyResampler.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NiftyResampler.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/NonRigidTransformation.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/NonRigidTransformation.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/Parser.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/Parser.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/ParserKey.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/ParserKey.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/Quaternion.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/Quaternion.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/Registration.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/Registration.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/Resample.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/Resample.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/SPMRegistration.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/SPMRegistration.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/Transformation.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/Transformation.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/cReg.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/cReg.h -------------------------------------------------------------------------------- /src/Registration/cReg/include/sirf/Reg/cReg_p.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/include/sirf/Reg/cReg_p.h -------------------------------------------------------------------------------- /src/Registration/cReg/sirf_affine_to_disp.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/sirf_affine_to_disp.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/sirf_change_datatype.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/sirf_change_datatype.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/sirf_crop_image.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/sirf_crop_image.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/sirf_flip_or_mirror_image.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/sirf_flip_or_mirror_image.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/sirf_inverse_transform.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/sirf_inverse_transform.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/sirf_nifti_maths.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/sirf_nifti_maths.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/sirf_print_nifti_info.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/sirf_print_nifti_info.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/sirf_tensor_split_join.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/sirf_tensor_split_join.cpp -------------------------------------------------------------------------------- /src/Registration/cReg/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/Registration/cReg/tests/test_cReg.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/cReg/tests/test_cReg.cpp -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/AffineTransformation.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/AffineTransformation.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/ImageData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/ImageData.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/ImageWeightedMean.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/ImageWeightedMean.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/NiftiImageData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/NiftiImageData.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/NiftiImageData3D.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/NiftiImageData3D.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/NiftiImageData3DDeformation.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/NiftiImageData3DDeformation.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/NiftiImageData3DDisplacement.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/NiftiImageData3DDisplacement.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/NiftiImageData3DTensor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/NiftiImageData3DTensor.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/NiftyAladinSym.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/NiftyAladinSym.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/NiftyF3dSym.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/NiftyF3dSym.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/NiftyRegistration.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/NiftyRegistration.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/NiftyResampler.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/NiftyResampler.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/Quaternion.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/Quaternion.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/Registration.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/Registration.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/SPMRegistration.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/SPMRegistration.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/Transformation.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/Transformation.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/parameter.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/parameter.m -------------------------------------------------------------------------------- /src/Registration/mReg/+sirf/+Reg/setParameter.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/+sirf/+Reg/setParameter.m -------------------------------------------------------------------------------- /src/Registration/mReg/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/CMakeLists.txt -------------------------------------------------------------------------------- /src/Registration/mReg/gmi/gmi_xreg.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/gmi/gmi_xreg.cpp -------------------------------------------------------------------------------- /src/Registration/mReg/libload_reg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/libload_reg.m -------------------------------------------------------------------------------- /src/Registration/mReg/printer.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/printer.cpp -------------------------------------------------------------------------------- /src/Registration/mReg/printer.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/printer.h -------------------------------------------------------------------------------- /src/Registration/mReg/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/Registration/mReg/tests/test_mReg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/tests/test_mReg.m -------------------------------------------------------------------------------- /src/Registration/mReg/tests/test_mReg_spm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/mReg/tests/test_mReg_spm.m -------------------------------------------------------------------------------- /src/Registration/pReg/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/pReg/CMakeLists.txt -------------------------------------------------------------------------------- /src/Registration/pReg/Reg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/pReg/Reg.py -------------------------------------------------------------------------------- /src/Registration/pReg/Reg_params.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/pReg/Reg_params.py -------------------------------------------------------------------------------- /src/Registration/pReg/pyreg.i: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/pReg/pyreg.i -------------------------------------------------------------------------------- /src/Registration/pReg/tests/.gitignore: -------------------------------------------------------------------------------- 1 | results/ 2 | -------------------------------------------------------------------------------- /src/Registration/pReg/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/pReg/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/Registration/pReg/tests/test_algebra.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/pReg/tests/test_algebra.py -------------------------------------------------------------------------------- /src/Registration/pReg/tests/test_pReg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/pReg/tests/test_pReg.py -------------------------------------------------------------------------------- /src/Registration/pReg/tests/test_pReg_spm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/pReg/tests/test_pReg_spm.py -------------------------------------------------------------------------------- /src/Registration/pReg/tests/tests_data_container_algebra.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/pReg/tests/tests_data_container_algebra.py -------------------------------------------------------------------------------- /src/Registration/pReg/tests/tests_data_container_algebra.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/Registration/pReg/tests/tests_view.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Registration/pReg/tests/tests_view.py -------------------------------------------------------------------------------- /src/Registration/pReg/tests/tests_view.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/Synergistic/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/CMakeLists.txt -------------------------------------------------------------------------------- /src/Synergistic/cSyn/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/cSyn/CMakeLists.txt -------------------------------------------------------------------------------- /src/Synergistic/cSyn/include/sirf/Syn/utilities.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/cSyn/include/sirf/Syn/utilities.h -------------------------------------------------------------------------------- /src/Synergistic/cSyn/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/cSyn/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/Synergistic/cSyn/tests/test_conv_img.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/cSyn/tests/test_conv_img.cpp -------------------------------------------------------------------------------- /src/Synergistic/cSyn/utilities.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/cSyn/utilities.cpp -------------------------------------------------------------------------------- /src/Synergistic/mSyn/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/mSyn/CMakeLists.txt -------------------------------------------------------------------------------- /src/Synergistic/mSyn/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/mSyn/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/Synergistic/mSyn/tests/gadgetron_to_nifti.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/mSyn/tests/gadgetron_to_nifti.m -------------------------------------------------------------------------------- /src/Synergistic/mSyn/tests/stir_to_nifti.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/mSyn/tests/stir_to_nifti.m -------------------------------------------------------------------------------- /src/Synergistic/pSyn/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/pSyn/CMakeLists.txt -------------------------------------------------------------------------------- /src/Synergistic/pSyn/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/pSyn/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/Synergistic/pSyn/tests/tests_syn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/pSyn/tests/tests_syn.py -------------------------------------------------------------------------------- /src/Synergistic/sirf_convert_image_type.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/sirf_convert_image_type.cpp -------------------------------------------------------------------------------- /src/Synergistic/sirf_do_images_match.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/sirf_do_images_match.cpp -------------------------------------------------------------------------------- /src/Synergistic/sirf_registration.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/sirf_registration.cpp -------------------------------------------------------------------------------- /src/Synergistic/sirf_resample.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/sirf_resample.cpp -------------------------------------------------------------------------------- /src/Synergistic/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/Synergistic/tests/test_cSynergistic.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/tests/test_cSynergistic.cpp -------------------------------------------------------------------------------- /src/Synergistic/tests/test_mSynergistic.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/tests/test_mSynergistic.m -------------------------------------------------------------------------------- /src/Synergistic/tests/test_pSynergistic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/Synergistic/tests/test_pSynergistic.py -------------------------------------------------------------------------------- /src/common/+sirf/+SIRF/DataContainer.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+SIRF/DataContainer.m -------------------------------------------------------------------------------- /src/common/+sirf/+SIRF/DataHandleVector.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+SIRF/DataHandleVector.m -------------------------------------------------------------------------------- /src/common/+sirf/+SIRF/GeometricalInfo.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+SIRF/GeometricalInfo.m -------------------------------------------------------------------------------- /src/common/+sirf/+SIRF/ImageData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+SIRF/ImageData.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/assert_validities.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/assert_validities.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/assert_validity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/assert_validity.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/check_status.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/check_status.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/class_name.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/class_name.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/delete.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/delete.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/label_and_name.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/label_and_name.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/mTest.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/mTest.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/name_and_parameters.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/name_and_parameters.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/parameter.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/parameter.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/run_all_scripts.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/run_all_scripts.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/set_parameter.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/set_parameter.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/set_window.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/set_window.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/show_2D_array.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/show_2D_array.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/show_3D_array.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/show_3D_array.m -------------------------------------------------------------------------------- /src/common/+sirf/+Utilities/str_to_int_list.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/+sirf/+Utilities/str_to_int_list.m -------------------------------------------------------------------------------- /src/common/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/CMakeLists.txt -------------------------------------------------------------------------------- /src/common/GeometricalInfo.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/GeometricalInfo.cpp -------------------------------------------------------------------------------- /src/common/ImageData.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/ImageData.cpp -------------------------------------------------------------------------------- /src/common/SIRF.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/SIRF.py -------------------------------------------------------------------------------- /src/common/Utilities.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/Utilities.py -------------------------------------------------------------------------------- /src/common/csirf.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/csirf.cpp -------------------------------------------------------------------------------- /src/common/examples_data_path.m.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/examples_data_path.m.in -------------------------------------------------------------------------------- /src/common/gmi/gmi_csirf.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/gmi/gmi_csirf.cpp -------------------------------------------------------------------------------- /src/common/iequals.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/iequals.cpp -------------------------------------------------------------------------------- /src/common/include/sirf/Syn/utilities.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/Syn/utilities.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/ANumRef.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/ANumRef.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/DataContainer.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/DataContainer.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/GeometricalInfo.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/GeometricalInfo.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/ImageData.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/ImageData.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/JacobiCG.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/JacobiCG.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/Operator.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/Operator.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/csirf.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/csirf.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/deprecate.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/deprecate.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/getenv.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/getenv.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/iequals.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/iequals.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/multisort.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/multisort.h -------------------------------------------------------------------------------- /src/common/include/sirf/common/utilities.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/include/sirf/common/utilities.h -------------------------------------------------------------------------------- /src/common/libload_sirf.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/libload_sirf.m -------------------------------------------------------------------------------- /src/common/mig.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/mig.cpp -------------------------------------------------------------------------------- /src/common/pysirf.i: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/pysirf.i -------------------------------------------------------------------------------- /src/common/select_module.py: -------------------------------------------------------------------------------- 1 | module = None 2 | -------------------------------------------------------------------------------- /src/common/set_up_MR.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/set_up_MR.m -------------------------------------------------------------------------------- /src/common/set_up_PET.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/set_up_PET.m -------------------------------------------------------------------------------- /src/common/set_up_Reg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/set_up_Reg.m -------------------------------------------------------------------------------- /src/common/set_up_engine.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/set_up_engine.m -------------------------------------------------------------------------------- /src/common/show_image.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/show_image.py -------------------------------------------------------------------------------- /src/common/syn_utilities.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/syn_utilities.cpp -------------------------------------------------------------------------------- /src/common/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/common/tests/test_version.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/tests/test_version.cpp -------------------------------------------------------------------------------- /src/common/utilities.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/utilities.cpp -------------------------------------------------------------------------------- /src/common/version.m.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/version.m.in -------------------------------------------------------------------------------- /src/common/version_major.m.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/version_major.m.in -------------------------------------------------------------------------------- /src/common/version_minor.m.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/version_minor.m.in -------------------------------------------------------------------------------- /src/common/version_patch.m.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/common/version_patch.m.in -------------------------------------------------------------------------------- /src/iUtilities/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/iUtilities/.gitignore -------------------------------------------------------------------------------- /src/iUtilities/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/iUtilities/CMakeLists.txt -------------------------------------------------------------------------------- /src/iUtilities/gmi/gmi.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/iUtilities/gmi/gmi.cpp -------------------------------------------------------------------------------- /src/iUtilities/include/sirf/iUtilities/DataHandle.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/iUtilities/include/sirf/iUtilities/DataHandle.h -------------------------------------------------------------------------------- /src/iUtilities/include/sirf/iUtilities/LocalisedException.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/iUtilities/include/sirf/iUtilities/LocalisedException.h -------------------------------------------------------------------------------- /src/iUtilities/include/sirf/iUtilities/iutilities.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/iUtilities/include/sirf/iUtilities/iutilities.h -------------------------------------------------------------------------------- /src/iUtilities/iutilities.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/iUtilities/iutilities.cpp -------------------------------------------------------------------------------- /src/iUtilities/pyiutilities.i: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/iUtilities/pyiutilities.i -------------------------------------------------------------------------------- /src/xGadgetron/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/.gitignore -------------------------------------------------------------------------------- /src/xGadgetron/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/CMakeLists.txt -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/CMakeLists.txt -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/FourierEncoding.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/FourierEncoding.cpp -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/NonCartesianEncoding.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/NonCartesianEncoding.cpp -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/TrajectoryPreparation.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/TrajectoryPreparation.cpp -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/cgadgetron.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/cgadgetron.cpp -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/gadgetron_client.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/gadgetron_client.cpp -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/gadgetron_data_containers.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/gadgetron_data_containers.cpp -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/gadgetron_fftw.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/gadgetron_fftw.cpp -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/gadgetron_x.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/gadgetron_x.cpp -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/FourierEncoding.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/FourierEncoding.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/NonCartesianEncoding.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/NonCartesianEncoding.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/TrajectoryPreparation.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/TrajectoryPreparation.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/cgadgetron.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/cgadgetron.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/cgadgetron_p.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/cgadgetron_p.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/cgadgetron_shared_ptr.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/cgadgetron_shared_ptr.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/chain_lib.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/chain_lib.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/gadget_lib.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/gadget_lib.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/gadgetron_client.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/gadgetron_client.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/gadgetron_data_containers.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/gadgetron_data_containers.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/gadgetron_image_wrap.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/gadgetron_image_wrap.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/gadgetron_x.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/gadgetron_x.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/include/sirf/Gadgetron/xgadgetron_utilities.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/include/sirf/Gadgetron/xgadgetron_utilities.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/tests/mrtest_auxiliary_funs.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/tests/mrtest_auxiliary_funs.cpp -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/tests/mrtest_auxiliary_funs.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/tests/mrtest_auxiliary_funs.h -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/tests/mrtests.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/tests/mrtests.cpp -------------------------------------------------------------------------------- /src/xGadgetron/cGadgetron/tests/mrtests_prep_testdata.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/cGadgetron/tests/mrtests_prep_testdata.cpp -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/Acquisition.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/Acquisition.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/AcquisitionData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/AcquisitionData.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/AcquisitionDataProcessor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/AcquisitionDataProcessor.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/AcquisitionModel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/AcquisitionModel.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/CartesianGRAPPAReconstructor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/CartesianGRAPPAReconstructor.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/ClientConnector.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/ClientConnector.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/CoilSensitivityData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/CoilSensitivityData.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/FullySampledCartesianReconstructor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/FullySampledCartesianReconstructor.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/Gadget.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/Gadget.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/GadgetChain.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/GadgetChain.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/Image.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/Image.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/ImageData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/ImageData.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/ImageDataProcessor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/ImageDataProcessor.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/Reconstructor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/Reconstructor.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/parameter.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/parameter.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/+sirf/+Gadgetron/preprocess_acquisition_data.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/+sirf/+Gadgetron/preprocess_acquisition_data.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/CMakeLists.txt -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/gmi/gmi_xgadgetron.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/gmi/gmi_xgadgetron.cpp -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/libload_gadgetron.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/libload_gadgetron.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/tests/test1.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/tests/test1.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/tests/test1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/tests/test1.txt -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/tests/test2.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/tests/test2.m -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/tests/test2.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/tests/test2.txt -------------------------------------------------------------------------------- /src/xGadgetron/mGadgetron/tests/test_all.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/mGadgetron/tests/test_all.m -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/CMakeLists.txt -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/Gadgetron.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/Gadgetron.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/Gadgetron_params.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/Gadgetron_params.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/pygadgetron.i: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/pygadgetron.i -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/pytest.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/pytest.ini -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test1.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test1.txt -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test2.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test2.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test2.txt -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test3.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test3.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test3.txt -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test4.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test4.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test4.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test_acq_hdr_idx_setters.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test_acq_hdr_idx_setters.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test_algebra.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test_algebra.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test_all.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test_all.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/test_imagedata_constructor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/test_imagedata_constructor.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/tests_data_container_algebra.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/tests_data_container_algebra.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/tests_data_container_algebra.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/tests_view.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xGadgetron/pGadgetron/tests/tests_view.py -------------------------------------------------------------------------------- /src/xGadgetron/pGadgetron/tests/tests_view.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/xSTIR/.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/.gitattributes -------------------------------------------------------------------------------- /src/xSTIR/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/.gitignore -------------------------------------------------------------------------------- /src/xSTIR/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/CMakeLists.txt -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/CMakeLists.txt -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/cstir.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/cstir.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/cstir_p.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/cstir_p.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/cstir_tw.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/cstir_tw.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/include/sirf/STIR/cstir.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/include/sirf/STIR/cstir.h -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/include/sirf/STIR/cstir_p.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/include/sirf/STIR/cstir_p.h -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/include/sirf/STIR/stir_data_containers.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/include/sirf/STIR/stir_data_containers.h -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/include/sirf/STIR/stir_types.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/include/sirf/STIR/stir_types.h -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/include/sirf/STIR/stir_x.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/include/sirf/STIR/stir_x.h -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/stir_data_containers.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/stir_data_containers.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/stir_x.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/stir_x.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/envar.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/envar.h -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/getenv.h: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/handle.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/handle.h -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/main.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/main.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/object.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/object.h -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/run_test4.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/run_test4.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/run_test6.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/run_test6.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/test1.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/test1.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/test2.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/test2.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/test3.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/test3.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/test4.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/test4.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/test5.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/test5.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/test6.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/test6.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/test7.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/test7.cpp -------------------------------------------------------------------------------- /src/xSTIR/cSTIR/tests/tests.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/cSTIR/tests/tests.h -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/AcquisitionData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/AcquisitionData.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/AcquisitionModel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/AcquisitionModel.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/AcquisitionModelUsingMatrix.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/AcquisitionModelUsingMatrix.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/AcquisitionModelUsingRayTracingMatrix.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/AcquisitionModelUsingRayTracingMatrix.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/AcquisitionSensitivityModel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/AcquisitionSensitivityModel.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/EllipticCylinder.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/EllipticCylinder.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/FBP2DReconstructor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/FBP2DReconstructor.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/ImageData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/ImageData.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/ImageDataProcessor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/ImageDataProcessor.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/IterativeReconstructor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/IterativeReconstructor.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/KOSMAPOSLReconstructor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/KOSMAPOSLReconstructor.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/ListmodeToSinograms.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/ListmodeToSinograms.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/MessageRedirector.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/MessageRedirector.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/OSMAPOSLReconstructor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/OSMAPOSLReconstructor.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/ObjectiveFunction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/ObjectiveFunction.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/PoissonLogLikelihoodWithLinearModelForMean.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/PoissonLogLikelihoodWithLinearModelForMean.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/PoissonLogLikelihoodWithLinearModelForMeanAndProjData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/PoissonLogLikelihoodWithLinearModelForMeanAndProjData.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/Prior.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/Prior.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/QuadraticPrior.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/QuadraticPrior.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/RayTracingMatrix.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/RayTracingMatrix.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/Reconstructor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/Reconstructor.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/Shape.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/Shape.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/TruncateToCylinderProcessor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/TruncateToCylinderProcessor.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/make_Poisson_loglikelihood.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/make_Poisson_loglikelihood.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/parameter.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/parameter.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/+sirf/+STIR/setParameter.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/+sirf/+STIR/setParameter.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/CMakeLists.txt -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/gmi/gmi_xstir.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/gmi/gmi_xstir.cpp -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/libload_stir.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/libload_stir.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/printer.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/printer.cpp -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/printer.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/printer.h -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/tests/test1.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/tests/test1.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/tests/test1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/tests/test1.txt -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/tests/test_all.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/tests/test_all.m -------------------------------------------------------------------------------- /src/xSTIR/mSTIR/tests/test_listmode.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/mSTIR/tests/test_listmode.m -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/CMakeLists.txt -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/STIR.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/STIR.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/STIR_params.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/STIR_params.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/pystir.i: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/pystir.i -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/CMakeLists.txt -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/pytest.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/pytest.ini -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/test_ObjectiveFunction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/test_ObjectiveFunction.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/test_algebra.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/test_algebra.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/test_all.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/test_all.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/test_six_adjoint.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/test_six_adjoint.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_NiftyPET.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_NiftyPET.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_asarray.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_asarray.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_asarray.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_data_container_algebra.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_data_container_algebra.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_data_container_algebra.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_five.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_five.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_five.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_five.txt -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_four.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_four.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_four.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_four.txt -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_listmode.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_listmode.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_one.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_one.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_one.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_one.txt -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_qp_lc_rdp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_qp_lc_rdp.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_qp_lc_rdp.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_qp_lc_rdp.txt -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_scatter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_scatter.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_three.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_three.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_three.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_three.txt -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_two.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_two.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_two.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_two.txt -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_view.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/src/xSTIR/pSTIR/tests/tests_view.py -------------------------------------------------------------------------------- /src/xSTIR/pSTIR/tests/tests_view.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/NiftyPET_test.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/tests/NiftyPET_test.sh -------------------------------------------------------------------------------- /tests/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SyneRBI/SIRF/HEAD/tests/README.md --------------------------------------------------------------------------------