├── .gitignore ├── LICENSE ├── Readme.md ├── SynthRAD_banner.png ├── anonymize.py ├── convert_structures.py ├── examples ├── pat_list_brain_mri2ct.txt ├── pre_process_batch_MR.sh ├── umcg │ ├── RT_struct_to_nrrd.py │ ├── convert_structures_batch.py │ ├── extract_tags_UMCG.py │ ├── pre_process_CBCT.py │ └── pre_process_MRI.py └── umcu │ ├── Preprocess_Brain_cbct2ct.sh │ ├── Preprocess_Brain_mri2ct.sh │ ├── Preprocess_Pelvis_cbct2ct.sh │ └── Preprocess_Pelvis_mri2ct.sh ├── extract_tags_tools.py ├── extract_tags_tools_umc.py ├── param_files ├── parameters_CBCT_brain.txt ├── parameters_CBCT_pelvis.txt ├── parameters_CBCT_pelvis2.txt ├── parameters_MR.txt ├── tags_CBCT.txt ├── tags_CT.txt └── tags_MR.txt └── pre_process_tools.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/SynthRAD2023/preprocessing/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: 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