├── .Rprofile ├── .github ├── CONTRIBUTING.md ├── ISSUE_TEMPLATE.md └── PULL_REQUEST_TEMPLATE.md ├── .gitignore ├── .travis.yml ├── 2018-07-09-FAIR-Data-and-Software-FDS.Rproj ├── CONDUCT.md ├── LICENSE.md ├── Makefile ├── README.md ├── _config.yml ├── _episodes ├── FAIR-remix-PANGAEA.md ├── python-modules-packages.md └── python-testing_and_ci.md ├── _episodes_rmd ├── FAIR-remix-PANGAEA.Rmd └── references.bib ├── _extras ├── about.md ├── customization.md ├── design.md └── faq.md ├── _includes ├── all_keypoints.html ├── carpentries.html ├── episode_break.html ├── episode_keypoints.html ├── episode_navbar.html ├── episode_overview.html ├── episode_title.html ├── github-ribbon.html ├── intro.html ├── javascript.html ├── lesson_footer.html ├── links.md ├── main_title.html ├── navbar.html ├── schedule.html ├── setup.md ├── workshop_ad.html └── workshop_footer.html ├── _layouts ├── base.html ├── break.html ├── episode.html ├── lesson.html ├── page.html ├── reference.html └── workshop.html ├── assets ├── TIB_Logo.png ├── css │ ├── bootstrap-theme.css │ ├── bootstrap-theme.css.map │ ├── bootstrap.css │ ├── bootstrap.css.map │ ├── lesson.scss │ └── syntax.css ├── fonts │ ├── glyphicons-halflings-regular.eot │ ├── glyphicons-halflings-regular.svg │ ├── glyphicons-halflings-regular.ttf │ ├── glyphicons-halflings-regular.woff │ └── glyphicons-halflings-regular.woff2 └── js │ ├── bootstrap.min.js │ ├── jquery.min.js │ ├── jquery.min.map │ └── lesson.js ├── bin ├── chunk-options.R ├── generate_md_episodes.R ├── knit_lessons.sh ├── lesson_check.py ├── lesson_initialize.py ├── markdown_ast.rb ├── repo_check.py ├── test_lesson_check.py ├── util.py └── workshop_check.py ├── code └── Python │ ├── Python_introduction.ipynb │ └── Python_introduction_clean.ipynb ├── fig ├── completed-page.png ├── edit-index-file-menu-bar.png ├── footer_logos.png ├── plot-1.png ├── select-gh-pages-branch.png └── using-github-import.png ├── index.md ├── requirements.txt └── setup ├── index.md ├── swc-installation-test-1.py └── swc-installation-test-2.py /.Rprofile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/.Rprofile -------------------------------------------------------------------------------- /.github/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/.github/CONTRIBUTING.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/.github/ISSUE_TEMPLATE.md -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/.github/PULL_REQUEST_TEMPLATE.md -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/.travis.yml -------------------------------------------------------------------------------- /2018-07-09-FAIR-Data-and-Software-FDS.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/2018-07-09-FAIR-Data-and-Software-FDS.Rproj -------------------------------------------------------------------------------- /CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/CONDUCT.md -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/LICENSE.md -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/README.md -------------------------------------------------------------------------------- /_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_config.yml -------------------------------------------------------------------------------- /_episodes/FAIR-remix-PANGAEA.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_episodes/FAIR-remix-PANGAEA.md -------------------------------------------------------------------------------- /_episodes/python-modules-packages.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_episodes/python-modules-packages.md -------------------------------------------------------------------------------- /_episodes/python-testing_and_ci.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_episodes/python-testing_and_ci.md -------------------------------------------------------------------------------- /_episodes_rmd/FAIR-remix-PANGAEA.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_episodes_rmd/FAIR-remix-PANGAEA.Rmd -------------------------------------------------------------------------------- /_episodes_rmd/references.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_episodes_rmd/references.bib -------------------------------------------------------------------------------- /_extras/about.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_extras/about.md -------------------------------------------------------------------------------- /_extras/customization.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_extras/customization.md -------------------------------------------------------------------------------- /_extras/design.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_extras/design.md -------------------------------------------------------------------------------- /_extras/faq.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_extras/faq.md -------------------------------------------------------------------------------- /_includes/all_keypoints.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/all_keypoints.html -------------------------------------------------------------------------------- /_includes/carpentries.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/carpentries.html -------------------------------------------------------------------------------- /_includes/episode_break.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/episode_break.html -------------------------------------------------------------------------------- /_includes/episode_keypoints.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/episode_keypoints.html -------------------------------------------------------------------------------- /_includes/episode_navbar.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/episode_navbar.html -------------------------------------------------------------------------------- /_includes/episode_overview.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/episode_overview.html -------------------------------------------------------------------------------- /_includes/episode_title.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/episode_title.html -------------------------------------------------------------------------------- /_includes/github-ribbon.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/github-ribbon.html -------------------------------------------------------------------------------- /_includes/intro.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/intro.html -------------------------------------------------------------------------------- /_includes/javascript.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/javascript.html -------------------------------------------------------------------------------- /_includes/lesson_footer.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/lesson_footer.html -------------------------------------------------------------------------------- /_includes/links.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/links.md -------------------------------------------------------------------------------- /_includes/main_title.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/main_title.html -------------------------------------------------------------------------------- /_includes/navbar.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/navbar.html -------------------------------------------------------------------------------- /_includes/schedule.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/schedule.html -------------------------------------------------------------------------------- /_includes/setup.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/setup.md -------------------------------------------------------------------------------- /_includes/workshop_ad.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/workshop_ad.html -------------------------------------------------------------------------------- /_includes/workshop_footer.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_includes/workshop_footer.html -------------------------------------------------------------------------------- /_layouts/base.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_layouts/base.html -------------------------------------------------------------------------------- /_layouts/break.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_layouts/break.html -------------------------------------------------------------------------------- /_layouts/episode.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_layouts/episode.html -------------------------------------------------------------------------------- /_layouts/lesson.html: -------------------------------------------------------------------------------- 1 | --- 2 | layout: base 3 | --- 4 | {% include main_title.html %} 5 | {{ content }} 6 | -------------------------------------------------------------------------------- /_layouts/page.html: -------------------------------------------------------------------------------- 1 | --- 2 | layout: base 3 | --- 4 | {% include main_title.html %} 5 | {{content}} 6 | -------------------------------------------------------------------------------- /_layouts/reference.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_layouts/reference.html -------------------------------------------------------------------------------- /_layouts/workshop.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/_layouts/workshop.html -------------------------------------------------------------------------------- /assets/TIB_Logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/TIB_Logo.png -------------------------------------------------------------------------------- /assets/css/bootstrap-theme.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/css/bootstrap-theme.css -------------------------------------------------------------------------------- /assets/css/bootstrap-theme.css.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/css/bootstrap-theme.css.map -------------------------------------------------------------------------------- /assets/css/bootstrap.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/css/bootstrap.css -------------------------------------------------------------------------------- /assets/css/bootstrap.css.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/css/bootstrap.css.map -------------------------------------------------------------------------------- /assets/css/lesson.scss: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/css/lesson.scss -------------------------------------------------------------------------------- /assets/css/syntax.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/css/syntax.css -------------------------------------------------------------------------------- /assets/fonts/glyphicons-halflings-regular.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/fonts/glyphicons-halflings-regular.eot -------------------------------------------------------------------------------- /assets/fonts/glyphicons-halflings-regular.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/fonts/glyphicons-halflings-regular.svg -------------------------------------------------------------------------------- /assets/fonts/glyphicons-halflings-regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/fonts/glyphicons-halflings-regular.ttf -------------------------------------------------------------------------------- /assets/fonts/glyphicons-halflings-regular.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/fonts/glyphicons-halflings-regular.woff -------------------------------------------------------------------------------- /assets/fonts/glyphicons-halflings-regular.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/fonts/glyphicons-halflings-regular.woff2 -------------------------------------------------------------------------------- /assets/js/bootstrap.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/js/bootstrap.min.js -------------------------------------------------------------------------------- /assets/js/jquery.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/js/jquery.min.js -------------------------------------------------------------------------------- /assets/js/jquery.min.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/js/jquery.min.map -------------------------------------------------------------------------------- /assets/js/lesson.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/assets/js/lesson.js -------------------------------------------------------------------------------- /bin/chunk-options.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/bin/chunk-options.R -------------------------------------------------------------------------------- /bin/generate_md_episodes.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/bin/generate_md_episodes.R -------------------------------------------------------------------------------- /bin/knit_lessons.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/bin/knit_lessons.sh -------------------------------------------------------------------------------- /bin/lesson_check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/bin/lesson_check.py -------------------------------------------------------------------------------- /bin/lesson_initialize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/bin/lesson_initialize.py -------------------------------------------------------------------------------- /bin/markdown_ast.rb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/bin/markdown_ast.rb -------------------------------------------------------------------------------- /bin/repo_check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/bin/repo_check.py -------------------------------------------------------------------------------- /bin/test_lesson_check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/bin/test_lesson_check.py -------------------------------------------------------------------------------- /bin/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/bin/util.py -------------------------------------------------------------------------------- /bin/workshop_check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/bin/workshop_check.py -------------------------------------------------------------------------------- /code/Python/Python_introduction.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/code/Python/Python_introduction.ipynb -------------------------------------------------------------------------------- /code/Python/Python_introduction_clean.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/code/Python/Python_introduction_clean.ipynb -------------------------------------------------------------------------------- /fig/completed-page.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/fig/completed-page.png -------------------------------------------------------------------------------- /fig/edit-index-file-menu-bar.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/fig/edit-index-file-menu-bar.png -------------------------------------------------------------------------------- /fig/footer_logos.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/fig/footer_logos.png -------------------------------------------------------------------------------- /fig/plot-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/fig/plot-1.png -------------------------------------------------------------------------------- /fig/select-gh-pages-branch.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/fig/select-gh-pages-branch.png -------------------------------------------------------------------------------- /fig/using-github-import.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/fig/using-github-import.png -------------------------------------------------------------------------------- /index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/index.md -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | PyYAML 2 | -------------------------------------------------------------------------------- /setup/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/setup/index.md -------------------------------------------------------------------------------- /setup/swc-installation-test-1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/setup/swc-installation-test-1.py -------------------------------------------------------------------------------- /setup/swc-installation-test-2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TIBHannover/2018-07-09-FAIR-Data-and-Software/HEAD/setup/swc-installation-test-2.py --------------------------------------------------------------------------------