├── HLAI.dbmhc ├── HLAII.dbmhc ├── LICENSE ├── README.txt ├── command.R ├── command_fourdigit.R ├── config.py ├── environment.yml ├── fourdigits.py ├── fourdigits.pyc ├── references ├── Class1NonClassical.1.ebwt ├── Class1NonClassical.2.ebwt ├── Class1NonClassical.3.ebwt ├── Class1NonClassical.4.ebwt ├── Class1NonClassical.fasta ├── Class1NonClassical.rev.1.ebwt ├── Class1NonClassical.rev.2.ebwt ├── ClassIWithoutNQex2-3.plus75.1.ebwt ├── ClassIWithoutNQex2-3.plus75.2.ebwt ├── ClassIWithoutNQex2-3.plus75.3.ebwt ├── ClassIWithoutNQex2-3.plus75.4.ebwt ├── ClassIWithoutNQex2-3.plus75.fasta ├── ClassIWithoutNQex2-3.plus75.rev.1.ebwt ├── ClassIWithoutNQex2-3.plus75.rev.2.ebwt ├── DPA1_nuc.fasta ├── DPA1_nuc_parsed.fasta ├── DPB1_nuc.fasta ├── DPB1_nuc_parsed.fasta ├── E_ex123plus75.fasta ├── F_nuc_parsed.fasta ├── G_ex123plus75.fasta ├── HLA2.ex2.plus75.1.ebwt ├── HLA2.ex2.plus75.2.ebwt ├── HLA2.ex2.plus75.3.ebwt ├── HLA2.ex2.plus75.4.ebwt ├── HLA2.ex2.plus75.fasta ├── 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