├── LICENSE ├── README.md ├── analysis.spatial_KO.xenium_human_glioblastoma_gpu.ipynb ├── celcomen ├── .ipynb_checkpoints │ └── __init__-checkpoint.py ├── __init__.py ├── __pycache__ │ └── __init__.cpython-310.pyc ├── datareaders │ ├── __init__.py │ └── datareader.py ├── models │ ├── .ipynb_checkpoints │ │ ├── __init__-checkpoint.py │ │ ├── celcomen-checkpoint.py │ │ └── simcomen-checkpoint.py │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-310.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── celcomen.cpython-310.pyc │ │ ├── celcomen.cpython-39.pyc │ │ ├── simcomen.cpython-310.pyc │ │ └── simcomen.cpython-39.pyc │ ├── celcomen.py │ └── simcomen.py ├── training_plan │ ├── .ipynb_checkpoints │ │ └── train-checkpoint.py │ └── train.py └── utils │ ├── .ipynb_checkpoints │ └── helpers-checkpoint.py │ ├── __init__.py │ └── helpers.py ├── docs ├── .ipynb_checkpoints │ ├── Makefile-checkpoint │ └── make-checkpoint.bat ├── Makefile ├── conf.py ├── index.rst ├── make.bat ├── requirements.txt └── source │ └── .ipynb_checkpoints │ ├── conf-checkpoint.py │ └── index-checkpoint.rst ├── images └── disentangling graphs and gene colocalization-2.png ├── pyproject.toml └── readthedocs.yaml /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Teichlab/celcomen/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Teichlab/celcomen/HEAD/README.md -------------------------------------------------------------------------------- /analysis.spatial_KO.xenium_human_glioblastoma_gpu.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Teichlab/celcomen/HEAD/analysis.spatial_KO.xenium_human_glioblastoma_gpu.ipynb 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