├── .azure-pipelines.yaml ├── .gitignore ├── LICENSE ├── Quickstart-Delayed.ipynb ├── Quickstart-vcf.ipynb ├── Quickstart.ipynb ├── README.md ├── genomics ├── 01-vcf-cli.ipynb ├── 02-vcf-python.ipynb └── data │ ├── gene-promoters-hg38.bed │ ├── s3-bcf-samples.txt │ └── vcfs │ ├── G1.vcf.gz │ ├── G1.vcf.gz.csi │ ├── G2.vcf.gz │ ├── G2.vcf.gz.csi │ ├── G3.vcf.gz │ └── G3.vcf.gz.csi ├── geo ├── sar │ ├── Capella-Average-Merge-TileDB.ipynb │ ├── Capella-Convert-to-dB-Example-Using-API-and-TileDB.ipynb │ ├── Capella-Log-Ratio-Change-Detection-Example-Using-API-and-TileDB.ipynb │ ├── Capella-Simple-Time-Series-Activity-Index-Example-TileDB.ipynb │ ├── Capella-Template-Match-Example-TileDB.ipynb │ ├── Capella-Time-Series-GIF-Example-TileDB.ipynb │ ├── filter-gif.json │ ├── filter-timeseries.json │ ├── filter.json │ ├── test_sar_band_1.jpg │ └── test_sar_band_1_template.jpg └── spire │ ├── Ship_Tracks.ipynb │ ├── Ships_DensityMapShader.ipynb │ └── Ships_SpatialQueries.ipynb ├── machine_learning └── image_classification_tf_keras │ ├── README.md │ └── flower_classification.ipynb └── tutorials └── notebooks ├── population_genomics └── tutorial-1kgp3.ipynb └── python └── dataframes └── df_basics.ipynb /.azure-pipelines.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/.azure-pipelines.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | .ipynb_checkpoints 2 | Makefile 3 | **/small_dataset 4 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/LICENSE -------------------------------------------------------------------------------- /Quickstart-Delayed.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/Quickstart-Delayed.ipynb -------------------------------------------------------------------------------- /Quickstart-vcf.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/Quickstart-vcf.ipynb -------------------------------------------------------------------------------- /Quickstart.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/Quickstart.ipynb -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/README.md -------------------------------------------------------------------------------- /genomics/01-vcf-cli.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/genomics/01-vcf-cli.ipynb -------------------------------------------------------------------------------- /genomics/02-vcf-python.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/genomics/02-vcf-python.ipynb -------------------------------------------------------------------------------- /genomics/data/gene-promoters-hg38.bed: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/genomics/data/gene-promoters-hg38.bed -------------------------------------------------------------------------------- /genomics/data/s3-bcf-samples.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/genomics/data/s3-bcf-samples.txt -------------------------------------------------------------------------------- /genomics/data/vcfs/G1.vcf.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/genomics/data/vcfs/G1.vcf.gz -------------------------------------------------------------------------------- /genomics/data/vcfs/G1.vcf.gz.csi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/genomics/data/vcfs/G1.vcf.gz.csi -------------------------------------------------------------------------------- /genomics/data/vcfs/G2.vcf.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/genomics/data/vcfs/G2.vcf.gz -------------------------------------------------------------------------------- /genomics/data/vcfs/G2.vcf.gz.csi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/genomics/data/vcfs/G2.vcf.gz.csi -------------------------------------------------------------------------------- /genomics/data/vcfs/G3.vcf.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/genomics/data/vcfs/G3.vcf.gz -------------------------------------------------------------------------------- /genomics/data/vcfs/G3.vcf.gz.csi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/genomics/data/vcfs/G3.vcf.gz.csi -------------------------------------------------------------------------------- /geo/sar/Capella-Average-Merge-TileDB.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/Capella-Average-Merge-TileDB.ipynb -------------------------------------------------------------------------------- /geo/sar/Capella-Convert-to-dB-Example-Using-API-and-TileDB.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/Capella-Convert-to-dB-Example-Using-API-and-TileDB.ipynb -------------------------------------------------------------------------------- /geo/sar/Capella-Log-Ratio-Change-Detection-Example-Using-API-and-TileDB.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/Capella-Log-Ratio-Change-Detection-Example-Using-API-and-TileDB.ipynb -------------------------------------------------------------------------------- /geo/sar/Capella-Simple-Time-Series-Activity-Index-Example-TileDB.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/Capella-Simple-Time-Series-Activity-Index-Example-TileDB.ipynb -------------------------------------------------------------------------------- /geo/sar/Capella-Template-Match-Example-TileDB.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/Capella-Template-Match-Example-TileDB.ipynb -------------------------------------------------------------------------------- /geo/sar/Capella-Time-Series-GIF-Example-TileDB.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/Capella-Time-Series-GIF-Example-TileDB.ipynb -------------------------------------------------------------------------------- /geo/sar/filter-gif.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/filter-gif.json -------------------------------------------------------------------------------- /geo/sar/filter-timeseries.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/filter-timeseries.json -------------------------------------------------------------------------------- /geo/sar/filter.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/filter.json -------------------------------------------------------------------------------- /geo/sar/test_sar_band_1.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/test_sar_band_1.jpg -------------------------------------------------------------------------------- /geo/sar/test_sar_band_1_template.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/sar/test_sar_band_1_template.jpg -------------------------------------------------------------------------------- /geo/spire/Ship_Tracks.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/spire/Ship_Tracks.ipynb -------------------------------------------------------------------------------- /geo/spire/Ships_DensityMapShader.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/spire/Ships_DensityMapShader.ipynb -------------------------------------------------------------------------------- /geo/spire/Ships_SpatialQueries.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/geo/spire/Ships_SpatialQueries.ipynb -------------------------------------------------------------------------------- /machine_learning/image_classification_tf_keras/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/machine_learning/image_classification_tf_keras/README.md -------------------------------------------------------------------------------- /machine_learning/image_classification_tf_keras/flower_classification.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/machine_learning/image_classification_tf_keras/flower_classification.ipynb -------------------------------------------------------------------------------- /tutorials/notebooks/population_genomics/tutorial-1kgp3.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/tutorials/notebooks/population_genomics/tutorial-1kgp3.ipynb -------------------------------------------------------------------------------- /tutorials/notebooks/python/dataframes/df_basics.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TileDB-Inc/archived-TileDB-Examples/HEAD/tutorials/notebooks/python/dataframes/df_basics.ipynb --------------------------------------------------------------------------------