├── .gitattributes ├── .gitignore ├── LICENSE ├── README.md ├── binder ├── PyData22_deblurring.ipynb ├── README.md ├── TomographyReconstruction.ipynb ├── TotalGeneralisedVariationInpainting.ipynb ├── TotalVariationDeblurring.ipynb ├── TotalVariationDenoising.ipynb ├── environment.yml └── index.ipynb ├── colab ├── CIL_Colab.ipynb └── README.md ├── demos ├── 1_Introduction │ ├── 00_CIL_geometry.ipynb │ ├── 01_intro_walnut_conebeam.ipynb │ ├── 02_intro_sandstone_parallel_roi.ipynb │ ├── 03_preprocessing.ipynb │ ├── 04_FBP_CGLS_SIRT.ipynb │ ├── 05_usb_limited_angle_fbp_sirt.ipynb │ ├── additional_exercises_data_resources.ipynb │ └── exercises │ │ ├── 00_intro_to_jupyter.ipynb │ │ ├── 01_intro_seeds_conebeam.ipynb │ │ ├── 02_preprocessing_seeds_conebeam.ipynb │ │ ├── 03_where_is_my_reader.ipynb │ │ ├── images │ │ ├── 03_3D_Geometry_Example.png │ │ └── 03_output.png │ │ └── snippets │ │ ├── 01_exA.py │ │ ├── 01_exB.py │ │ ├── 01_exC.py │ │ ├── 01_exD.py │ │ ├── 01_exE.py │ │ ├── 02_exA.py │ │ ├── 02_exB.py │ │ ├── 02_exC.py │ │ ├── 02_exD.py │ │ ├── 02_exE.py │ │ ├── 02_exF.py │ │ ├── 02_exG.py │ │ ├── 03_exA.py │ │ ├── 03_exB.py │ │ └── 03_exC.py ├── 2_Iterative │ ├── 01_optimisation_gd_fista.ipynb │ ├── 02_tikhonov_block_framework.ipynb │ ├── 03_PDHG.ipynb │ ├── 04_SPDHG.ipynb │ ├── 05_Laminography_with_TV.ipynb │ ├── additional_exercises_data_resources.ipynb │ └── snippets │ │ ├── 01_ex1_a.py │ │ ├── 01_ex1_b.py │ │ ├── 01_ex2.py │ │ ├── 02_ex3.py │ │ ├── 03_ex1.py │ │ ├── 03_ex2.py │ │ └── 03_ex3.py ├── 3_Multichannel │ ├── .gitattributes │ ├── 01_Colour_Processing.ipynb │ ├── 02_Dynamic_CT.ipynb │ ├── 03_Hyperspectral_reconstruction.ipynb │ ├── DejaVu Fonts License.txt │ ├── DejaVuSerif.ttf │ ├── Images │ │ ├── Iodine_K_edge.png │ │ ├── K_edge_Sub.jpg │ │ ├── Lizard_gif.gif │ │ ├── Spectral_Imaging_Geometry.jpg │ │ ├── denoising_fig1.png │ │ ├── inpainting_fig1.png │ │ └── inpainting_fig2.png │ └── utilities_dynamic_ct.py ├── 4_Deep_Dives │ ├── 01_callbacks.ipynb │ ├── 02_phase_retrieval.ipynb │ ├── 03_htc_2022.ipynb │ ├── 04_preconditioner_stepsize.ipynb │ ├── 05_esrf_pipeline.ipynb │ ├── 06_directional_TV.ipynb │ ├── 07_flexible_geometry.ipynb │ ├── esrf_code │ │ ├── HDF5_ParallelDataReader.py │ │ └── ReaderABC.py │ ├── htc_code │ │ ├── helper_functions.py │ │ ├── htc_discs.jpg │ │ └── mat_reader.py │ └── images │ │ ├── 07_cone_geometry_example.png │ │ └── 07_standard_geometry_positions.png ├── README.md └── appendix.ipynb ├── how-to └── 1_Read_and_visualise │ ├── NikonDataReader.ipynb │ └── ZeissDataReader.ipynb └── misc ├── .keep ├── Benchmark_TVTomoRecons.ipynb ├── FISTA_vs_ISTA.ipynb ├── SGD_demo_notebook.ipynb ├── callback_demonstration.ipynb ├── flux_normaliser.ipynb ├── gvxr_recon.ipynb ├── phase_retrieval_tomopy_comparison.ipynb ├── split_fdk_example.py ├── stochastic_sampling_examples.ipynb ├── testing_TV_warmstart.ipynb ├── testing_sampling_SPDHG.ipynb └── wavelet_demo_xct_spheress.py /.gitattributes: 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