├── License ├── README.md ├── e ├── heatmapS.sh.bak ├── i ├── lines.py ├── linesWithErrorBar.py ├── mfuzz.r ├── old ├── heatmap.2.sh ├── patch ├── sp_boxplot.statistics.sh.orig └── sp_scatterplotContour.bak.sh ├── p ├── python.log ├── s-plot ├── s-plot.sh ├── sp_areaplot.new.sh ├── sp_barPlot.sh ├── sp_boxplot.sh ├── sp_boxplot.statistics.sh ├── sp_boxplot_precomputed_values.sh ├── sp_colorLegend.sh ├── sp_configure.sh ├── sp_contourPlot.sh ├── sp_density2d.sh ├── sp_densityHistPlot.sh ├── sp_densityPlot.sh ├── sp_enrichmentPlot.sh ├── sp_hclust.sh ├── sp_hcluster.sh ├── sp_hcluster_gg.sh ├── sp_heatmap.2.sh ├── sp_heatmapM.sh ├── sp_heatmapS.sh ├── sp_histogram.sh ├── sp_horizontalBar.sh ├── sp_lines.sh ├── sp_lines.sh.depleted ├── sp_lines_lm.sh ├── sp_multiBar.sh ├── sp_normTest.sh ├── sp_pca.sh ├── sp_pheatmap.sh ├── sp_png2eps.sh ├── sp_pretteyHeatmap.sh ├── sp_prettyHeatmap.sh ├── sp_scatterplot.sh ├── sp_scatterplot2.sh ├── sp_scatterplot3d.sh ├── sp_scatterplotColor.sh ├── sp_scatterplotContour.bak.sh ├── sp_scatterplotContour.sh ├── sp_scatterplotDoubleVariable.sh ├── sp_scatterplotLotsData.sh ├── sp_scatterplotMatrix.sh ├── sp_upsetView.sh ├── sp_vennDiagram.sh ├── sp_volcano.sh ├── swap ├── swap2 ├── tips ├── trash ├── test ├── test.scatterplot.color.pdf └── test.scatterplot.dv.pdf └── tutorial ├── diamond.extract.matrix ├── diamond.extract.matrix.boxplot.noOutlier.png ├── diamond.extract.matrix.boxplot.noOutlier.r ├── diamond.extract.matrix.boxplot.png ├── diamond.extract.matrix.boxplot.r ├── diamond.extract.matrix.boxplot.violin.png ├── diamond.extract.matrix.boxplot.violin.r ├── diamond.extract.matrix.melt ├── diamond.extract.matrix.melt.boxplot.png ├── diamond.extract.matrix.melt.boxplot.r ├── test ├── test.boxplot.png ├── test.boxplot.r └── trash ├── diamond.matrix ├── diamond.matrix.boxplot.png ├── diamond.matrix.boxplot.r ├── diamonds.matrix ├── file.matrix ├── file.matrix.boxplot.png └── file.matrix.boxplot.r /License: 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