├── .gitattributes ├── ECAMP ├── Fine-tuning │ ├── Classification │ │ ├── datasets │ │ │ ├── Aptos │ │ │ │ ├── test_list.txt │ │ │ │ ├── train_list.txt │ │ │ │ ├── train_list_1.txt │ │ │ │ ├── train_list_10.txt │ │ │ │ └── val_list.txt │ │ │ ├── COVIDx │ │ │ │ ├── test_list.txt │ │ │ │ ├── train_list.txt │ │ │ │ ├── train_list_1.txt │ │ │ │ ├── train_list_10.txt │ │ │ │ └── val_list.txt │ │ │ ├── CheXpert │ │ │ │ ├── test_list.txt │ │ │ │ ├── test_list_600.txt │ │ │ │ ├── train_list.txt │ │ │ │ ├── train_list_1.txt │ │ │ │ ├── train_list_10.txt │ │ │ │ └── val_list.txt │ │ │ ├── ChestX-ray14 │ │ │ │ ├── test_list.txt │ │ │ │ ├── train_list.txt │ │ │ │ ├── train_list_1.txt │ │ │ │ ├── train_list_10.txt │ │ │ │ └── val_list.txt │ │ │ ├── MURED │ │ │ │ ├── test_list.txt │ │ │ │ ├── train_list.txt │ │ │ │ ├── train_list_1.txt │ │ │ │ ├── train_list_10.txt │ │ │ │ └── val_list.txt │ │ │ ├── ODIR5K │ │ │ │ ├── test_list.txt │ │ │ │ ├── train_list.txt │ │ │ │ ├── train_list_1.txt │ │ │ │ ├── train_list_10.txt │ │ │ │ └── val_list.txt │ │ │ ├── RSNA │ │ │ │ ├── test_list.txt │ │ │ │ ├── train_list.txt │ │ │ │ ├── train_list_1.txt │ │ │ │ ├── train_list_10.txt │ │ │ │ └── val_list.txt │ │ │ └── SpineXR │ │ │ │ ├── test_list.txt │ │ │ │ ├── train_list.txt │ │ │ │ ├── train_list_1.txt │ │ │ │ ├── train_list_10.txt │ │ │ │ └── val_list.txt │ │ ├── models_vit.py │ │ ├── run_ft.sh │ │ ├── run_lp.sh │ │ ├── train.py │ │ └── utils │ │ │ ├── data_utils.py │ │ │ ├── dist_util.py │ │ │ ├── my_dataset.py │ │ │ └── scheduler.py │ ├── Detection │ │ ├── datasets │ │ │ └── RSNA │ │ │ │ ├── test_list.csv │ │ │ │ ├── train_list.csv │ │ │ │ ├── train_list_1.csv │ │ │ │ ├── train_list_10.csv │ │ │ │ └── val_list.csv │ │ ├── detector_backbone_resnet.py │ │ ├── detector_backbone_vit.py │ │ ├── detector_model.py │ │ ├── run.sh │ │ ├── train.py │ │ └── utils │ │ │ ├── data_utils.py │ │ │ ├── dataset_split.py │ │ │ ├── detection_utils.py │ │ │ ├── dist_util.py │ │ │ ├── my_dataset.py │ │ │ ├── scheduler.py │ │ │ └── yolo_loss.py │ └── Segmentation │ │ ├── datasets │ │ ├── RIGA │ │ │ ├── test_list.csv │ │ │ ├── train_list.csv │ │ │ ├── train_list_1.csv │ │ │ ├── train_list_10.csv │ │ │ └── val_list.csv │ │ ├── RSNA │ │ │ ├── test_list.csv │ │ │ ├── train_list.csv │ │ │ ├── train_list_1.csv │ │ │ ├── train_list_10.csv │ │ │ └── val_list.csv │ │ └── SIIM │ │ │ ├── siim.csv │ │ │ ├── test_list.csv │ │ │ ├── train_list.csv │ │ │ ├── train_list_1.csv │ │ │ ├── train_list_10.csv │ │ │ └── val_list.csv │ │ ├── models_vit.py │ │ ├── models_vit_RIGA.py │ │ ├── run.sh │ │ ├── train.py │ │ ├── train_RIGA.py │ │ └── utils │ │ ├── data_utils.py │ │ ├── dist_util.py │ │ ├── my_dataset.py │ │ ├── scheduler.py │ │ └── segmentation_loss.py └── Pre-training │ ├── dataset │ └── mimic_wordpiece.json │ ├── main_pretrain.py │ ├── module │ ├── bert_config.py │ ├── bert_encoder.py │ ├── bert_modeling.py │ ├── context_fusion.py │ ├── model_ecamp.py │ └── pretrain_datasets.py │ ├── run.sh │ └── util │ ├── lr_decay.py │ ├── lr_sched.py │ ├── misc.py │ └── pos_embed.py ├── LICENSE ├── README.md ├── Visualization ├── README.md ├── dataset │ └── mimic_wordpiece.json ├── main_visualization.py ├── module │ ├── bert_config.py │ ├── bert_encoder.py │ ├── bert_modeling.py │ ├── context_fusion.py │ └── model_ecamp.py ├── run.sh └── util │ └── pos_embed.py ├── environment.yml └── figs ├── intro.jpg └── main.jpg /.gitattributes: -------------------------------------------------------------------------------- 1 | * text eol=lf -------------------------------------------------------------------------------- /ECAMP/Fine-tuning/Classification/datasets/Aptos/test_list.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ToniChopp/ECAMP/HEAD/ECAMP/Fine-tuning/Classification/datasets/Aptos/test_list.txt -------------------------------------------------------------------------------- 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