├── .gitignore ├── 1-preparing-data.ipynb ├── 2-topic-modelling.ipynb ├── 3-analysis.ipynb ├── README.md └── src ├── __init__.py ├── make_data.py ├── plotting.py ├── proteinnet_parser.py └── uniprot_parser.py /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | .ipynb_checkpoints 3 | __pycache__ 4 | -------------------------------------------------------------------------------- /1-preparing-data.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TurtleTools/alphafold-structural-space/HEAD/1-preparing-data.ipynb -------------------------------------------------------------------------------- /2-topic-modelling.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TurtleTools/alphafold-structural-space/HEAD/2-topic-modelling.ipynb -------------------------------------------------------------------------------- /3-analysis.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TurtleTools/alphafold-structural-space/HEAD/3-analysis.ipynb -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TurtleTools/alphafold-structural-space/HEAD/README.md -------------------------------------------------------------------------------- /src/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/make_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TurtleTools/alphafold-structural-space/HEAD/src/make_data.py -------------------------------------------------------------------------------- /src/plotting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TurtleTools/alphafold-structural-space/HEAD/src/plotting.py -------------------------------------------------------------------------------- /src/proteinnet_parser.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TurtleTools/alphafold-structural-space/HEAD/src/proteinnet_parser.py -------------------------------------------------------------------------------- /src/uniprot_parser.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/TurtleTools/alphafold-structural-space/HEAD/src/uniprot_parser.py --------------------------------------------------------------------------------