├── .gitignore ├── LICENSE ├── README.md ├── _config.yml ├── _data └── members.yml ├── _includes ├── about.html ├── clients.html ├── contact.html ├── css │ ├── agency.css │ ├── bootstrap.min.css │ └── custom.css ├── footer.html ├── head.html ├── header.html ├── js.html ├── modals.html ├── portfolio_grid.html ├── services.html └── team.html ├── _layouts ├── default.html └── style.css ├── _plugins └── hex_to_rgb.rb ├── _posts ├── 2015-04-12-word.markdown ├── 2015-04-22-introR.markdown ├── 2015-04-29-introGit.markdown ├── 2015-05-01-hackyHour.markdown ├── 2015-05-06-word.markdown ├── 2015-05-13-knitr.markdown ├── 2015-05-19-ggplot2.markdown ├── 2015-05-21-workalong.markdown ├── 2015-05-27-loops.markdown ├── 2015-06-03-R_markdown_JennyBryan.markdown ├── 2015-06-04-sprint.markdown ├── 2015-06-10-R_Google.markdown ├── 2015-06-10-rstudio-webinar.markdown ├── 2015-06-24-govt-environment.markdown ├── 2015-07-02-writing_packages.markdown ├── 2015-07-08-LatticeVsGgplot2.markdown ├── 2015-07-15-work-along.markdown ├── 2015-07-24-hackyhour.markdown ├── 2015-08-12-datamunging.markdown ├── 2015-08-19-biomaRt.markdown ├── 2015-08-26-tree1.markdown ├── 2015-09-02-coworking.markdown ├── 2015-09-08-heatmap.markdown ├── 2015-09-16-journal-club.markdown ├── 2015-09-23-coworking.markdown ├── 2015-09-30-DiagrammeR.markdown ├── 2015-10-07-introPython.markdown ├── 2015-10-16-journalClub.markdown ├── 2015-10-21-python.markdown ├── 2015-10-28-work-along.markdown ├── 2015-11-04-pandas.markdown ├── 2015-11-18-vegan.markdown ├── 2015-11-25-veganwithGavin.markdown ├── 2015-12-02-reshape2.markdown ├── 2015-12-09-Pandas2.markdown ├── 2015-12-16-docker.markdown ├── 2015-12-18-holiday.markdown ├── 2016-01-11-coworking.markdown ├── 2016-01-18-pypackages.markdown ├── 2016-01-25-coworking.markdown ├── 2016-02-01-rassert.markdown ├── 2016-02-15-pandas.markdown ├── 2016-02-22-coworking.markdown ├── 2016-02-29-broom.markdown ├── 2016-03-07-shiny.markdown ├── 2016-03-14-cloud.markdown ├── 2016-03-21-CytoscapeWithJulia.markdown ├── 2016-04-04-GuestSpeaker.markdown ├── 2016-04-11-coworking.markdown ├── 2016-04-18-pyplot.markdown ├── 2016-04-25-coworking.markdown ├── 2016-05-20-pandas.markdown ├── 2016-05-27-ggplot2.markdown ├── 2016-06-03-coworking.markdown ├── 2016-06-10-stringr.markdown ├── 2016-06-17-network.markdown ├── 2016-06-24-linear-regression.markdown ├── 2016-07-08-lm-glm.markdown ├── 2016-07-15-numerical.markdown ├── 2016-07-22-knitr.markdown ├── 2016-07-29-hackyhour.markdown ├── 2016-07-29-remake.markdown ├── 2016-08-05-dplyr.markdown ├── 2016-08-12-purrr.markdown ├── 2016-08-19-tidyr.markdown ├── 2016-08-26-coworking.markdown ├── 2016-09-12-Git-together.markdown ├── 2016-09-19-ggplot2.markdown ├── 2016-09-26-AdvancedR.markdown ├── 2016-10-03-dplyr.markdown ├── 2016-10-17-advancedR.markdown ├── 2016-10-21-hackyhour.markdown ├── 2016-10-24-advancedR.markdown ├── 2016-10-31-knitr.markdown ├── 2016-11-07-coworking.markdown ├── 2016-11-14-advancedR.markdown ├── 2016-11-21-markjohnson.markdown ├── 2016-11-28-advancedR.markdown ├── 2016-12-12-advancedR.markdown ├── 2016-12-16-HolidayParty.markdown ├── 2017-01-11-coworking.markdown ├── 2017-01-18-coworking.markdown ├── 2017-01-25-Project.markdown ├── 2017-02-01-Project.markdown ├── 2017-02-15-dplyr.markdown ├── 2017-02-22-Project.markdown ├── 2017-03-08-advancedR.markdown ├── 2017-03-15-tidyR.markdown ├── 2017-03-22-Project.markdown ├── 2017-03-29-advancedR.markdown ├── 2017-04-12-ggplot2.markdown ├── 2017-04-19-Project.markdown ├── 2017-04-26-advancedR.markdown ├── 2017-05-03-Project.markdown ├── 2017-05-10-regex.markdown ├── 2017-05-17-work-along.markdown ├── 2017-05-24-advancedR.markdown ├── 2017-05-31-work-along.markdown ├── 2017-06-01-mozilla-global-sprint.markdown ├── 2017-06-07-work-along.markdown ├── 2018-06-07-planning-session.markdown ├── 2018-06-13-intro-R.markdown ├── 2018-06-21-workalong.markdown ├── 2018-06-28-NSE.markdown ├── 2018-07-05-tidyR.markdown ├── 2018-07-12-work-along.markdown ├── 2018-07-19-spatialR.markdown ├── 2018-07-26-ggplot2.markdown ├── 2018-08-02-work-along.markdown ├── 2018-08-09-learn_remote_computing_with_compute_canada.md ├── 2018-08-16-regular-expressions.md ├── 2018-08-23-work-along.markdown ├── 2018-08-30-plotly.markdown ├── 2018-09-12-planning.markdown ├── 2018-09-19-data-viz.markdown ├── 2018-09-26-functions.markdown ├── 2018-10-03-work-a-long.markdown ├── 2018-10-10-data-transformation.markdown ├── 2018-10-17-oo-field.markdown ├── 2018-10-24-time-series-Julia.markdown ├── 2018-10-31-EDA.markdown ├── 2018-11-07-data-structures.markdown ├── 2018-11-21-shiny-in-R.markdown ├── 2018-11-28-r-markdown.markdown ├── 2018-14-11-work-a-long.markdown ├── 2019-01-16-brainstorming.markdown ├── 2019-01-23-dplyr-planning.markdown ├── 2019-03-13-eda.markdown ├── 2019-03-20-machineLearning.markdown ├── 2019-03-27-workalong.markdown ├── 2019-04-03-julia.markdown ├── 2019-04-10-workalong.markdown ├── 2019-04-17-iteration-purrr.markdown ├── 2019-04-24-workalong.markdown ├── 2019-05-01-workalong.markdown ├── 2019-05-08-nse.markdown ├── 2019-05-15-endofyear.markdown ├── 2019-10-09-workalong.markdown ├── 2019-10-16-git.markdown ├── 2019-10-23-workalong.markdown ├── 2019-10-30-functions.markdown ├── 2019-11-06-workalong.markdown ├── 2019-11-13-iteration.markdown ├── 2019-11-20-julia.markdown ├── 2019-11-27-finalSession.markdown ├── 2019-12-13-happHolidays.markdown ├── 2020-01-15-winter2020FirstSession.markdown ├── 2020-01-22-introSession.markdown ├── 2020-01-29-workalong.markdown ├── 2020-02-12-introTidyTuesday.markdown ├── 2020-02-12-readingWeek.markdown ├── 2020-03-04-workalong.markdown ├── 2020-03-11-workalong.markdown ├── 2020-03-18-WellKeptWednesday.markdown ├── 2020-03-25-workalong.markdown ├── 2020-04-01-RPackages.markdown ├── 2020-04-08-EndOfTerm.markdown ├── 2021-01-13-introSession.markdown ├── 2021-01-20-workalong.markdown ├── 2021-03-03-iteration.markdown ├── 2021-03-10-git_introduction.markdown ├── 2021-03-17-git_rstudio.markdown └── 2021-03-24-Rpackagedevelopment.md ├── _site ├── 2015 │ ├── 10 │ │ ├── 14 │ │ │ └── journalClub │ │ │ │ └── index.html │ │ ├── 21 │ │ │ └── python │ │ │ │ └── index.html │ │ ├── 28 │ │ │ └── work-along │ │ │ │ └── index.html │ │ └── 07 │ │ │ └── introPython │ │ │ └── index.html │ ├── 11 │ │ ├── 18 │ │ │ └── vegan │ │ │ │ └── index.html │ │ ├── 25 │ │ │ └── veganwithGavin │ │ │ │ └── index.html │ │ └── 04 │ │ │ └── pandas │ │ │ └── index.html │ ├── 12 │ │ ├── 16 │ │ │ └── docker │ │ │ │ └── index.html │ │ ├── 18 │ │ │ └── holiday │ │ │ │ └── index.html │ │ ├── 02 │ │ │ └── reshape2 │ │ │ │ └── index.html │ │ └── 09 │ │ │ └── Pandas2 │ │ │ └── index.html │ ├── 04 │ │ ├── 15 │ │ │ └── word │ │ │ │ └── index.html │ │ ├── 22 │ │ │ └── introR │ │ │ │ └── index.html │ │ └── 29 │ │ │ └── introGit │ │ │ └── index.html │ ├── 05 │ │ ├── 13 │ │ │ └── knitr │ │ │ │ └── index.html │ │ ├── 19 │ │ │ └── ggplot2 │ │ │ │ └── index.html │ │ ├── 21 │ │ │ └── workalong │ │ │ │ └── index.html │ │ ├── 27 │ │ │ └── loops │ │ │ │ └── index.html │ │ ├── 01 │ │ │ └── hackyHour │ │ │ │ └── index.html │ │ └── 06 │ │ │ └── word │ │ │ └── index.html │ ├── 06 │ │ ├── 10 │ │ │ ├── R_Google │ │ │ │ └── index.html │ │ │ └── rstudio-webinar │ │ │ │ └── index.html │ │ ├── 24 │ │ │ └── govt-environment │ │ │ │ └── index.html │ │ ├── 03 │ │ │ └── R_markdown_JennyBryan │ │ │ │ └── index.html │ │ └── 04 │ │ │ └── sprint │ │ │ └── index.html │ ├── 07 │ │ ├── 15 │ │ │ └── work-along │ │ │ │ └── index.html │ │ ├── 24 │ │ │ └── hackyhour │ │ │ │ └── index.html │ │ ├── 02 │ │ │ └── writing_packages │ │ │ │ └── index.html │ │ └── 08 │ │ │ └── LatticeVsGgplot2 │ │ │ └── index.html │ ├── 08 │ │ ├── 12 │ │ │ └── datamunging │ │ │ │ └── index.html │ │ ├── 19 │ │ │ └── biomaRt │ │ │ │ └── index.html │ │ └── 26 │ │ │ └── tree1 │ │ │ └── index.html │ └── 09 │ │ ├── 16 │ │ └── journal-club │ │ │ └── index.html │ │ ├── 23 │ │ └── coworking │ │ │ └── index.html │ │ ├── 30 │ │ └── DiagrammeR │ │ │ └── index.html │ │ ├── 02 │ │ └── coworking │ │ │ └── index.html │ │ └── 08 │ │ └── heatmap │ │ └── index.html ├── 2016 │ ├── 10 │ │ ├── 17 │ │ │ └── advancedR │ │ │ │ └── index.html │ │ ├── 21 │ │ │ └── hackyhour │ │ │ │ └── index.html │ │ ├── 24 │ │ │ └── advancedR │ │ │ │ └── index.html │ │ ├── 31 │ │ │ └── knitr │ │ │ │ └── index.html │ │ └── 03 │ │ │ └── dplyr │ │ │ └── index.html │ ├── 11 │ │ ├── 14 │ │ │ └── advancedR │ │ │ │ └── index.html │ │ ├── 21 │ │ │ └── markjohnson │ │ │ │ └── index.html │ │ ├── 28 │ │ │ └── advancedR │ │ │ │ └── index.html │ │ └── 07 │ │ │ └── coworking │ │ │ └── index.html │ ├── 12 │ │ ├── 12 │ │ │ └── advancedR │ │ │ │ └── index.html │ │ └── 16 │ │ │ └── HolidayParty │ │ │ └── index.html │ ├── 01 │ │ ├── 11 │ │ │ └── coworking │ │ │ │ └── index.html │ │ ├── 18 │ │ │ └── pypackages │ │ │ │ └── index.html │ │ └── 25 │ │ │ └── coworking │ │ │ └── index.html │ ├── 02 │ │ ├── 15 │ │ │ └── pandas │ │ │ │ └── index.html │ │ ├── 22 │ │ │ └── coworking │ │ │ │ └── index.html │ │ ├── 29 │ │ │ └── broom │ │ │ │ └── index.html │ │ └── 01 │ │ │ └── rassert │ │ │ └── index.html │ ├── 03 │ │ ├── 14 │ │ │ └── cloud │ │ │ │ └── index.html │ │ ├── 21 │ │ │ └── CytoscapeWithJulia │ │ │ │ └── index.html │ │ └── 07 │ │ │ └── shiny │ │ │ └── index.html │ ├── 04 │ │ ├── 11 │ │ │ └── coworking │ │ │ │ └── index.html │ │ ├── 18 │ │ │ └── pyplot │ │ │ │ └── index.html │ │ ├── 25 │ │ │ └── coworking │ │ │ │ └── index.html │ │ └── 04 │ │ │ └── GuestSpeaker │ │ │ └── index.html │ ├── 05 │ │ ├── 20 │ │ │ └── pandas │ │ │ │ └── index.html │ │ └── 27 │ │ │ └── ggplot2 │ │ │ └── index.html │ ├── 06 │ │ ├── 10 │ │ │ └── stringr │ │ │ │ └── index.html │ │ ├── 17 │ │ │ └── network │ │ │ │ └── index.html │ │ ├── 24 │ │ │ └── linear-regression │ │ │ │ └── index.html │ │ └── 03 │ │ │ └── coworking │ │ │ └── index.html │ ├── 07 │ │ ├── 15 │ │ │ └── numerical │ │ │ │ └── index.html │ │ ├── 22 │ │ │ └── knitr │ │ │ │ └── index.html │ │ ├── 29 │ │ │ ├── hackyhour │ │ │ │ └── index.html │ │ │ └── remake │ │ │ │ └── index.html │ │ └── 08 │ │ │ └── lm-glm │ │ │ └── index.html │ ├── 08 │ │ ├── 12 │ │ │ └── purrr │ │ │ │ └── index.html │ │ ├── 19 │ │ │ └── tidyr │ │ │ │ └── index.html │ │ ├── 26 │ │ │ └── coworking │ │ │ │ └── index.html │ │ └── 05 │ │ │ └── dplyr │ │ │ └── index.html │ └── 09 │ │ ├── 12 │ │ └── Git-together │ │ │ └── index.html │ │ ├── 19 │ │ └── ggplot2 │ │ │ └── index.html │ │ └── 26 │ │ └── AdvancedR │ │ └── index.html ├── 2017 │ ├── 01 │ │ ├── 11 │ │ │ └── coworking │ │ │ │ └── index.html │ │ ├── 18 │ │ │ └── coworking │ │ │ │ └── index.html │ │ └── 25 │ │ │ └── Project │ │ │ └── index.html │ ├── 02 │ │ ├── 15 │ │ │ └── dplyr │ │ │ │ └── index.html │ │ ├── 22 │ │ │ └── Project │ │ │ │ └── index.html │ │ └── 01 │ │ │ └── Project │ │ │ └── index.html │ ├── 03 │ │ ├── 15 │ │ │ └── tidyR │ │ │ │ └── index.html │ │ ├── 22 │ │ │ └── Project │ │ │ │ └── index.html │ │ ├── 29 │ │ │ └── advancedR │ │ │ │ └── index.html │ │ └── 08 │ │ │ └── advancedR │ │ │ └── index.html │ ├── 04 │ │ ├── 12 │ │ │ └── ggplot2 │ │ │ │ └── index.html │ │ ├── 19 │ │ │ └── Project │ │ │ │ └── index.html │ │ └── 26 │ │ │ └── advancedR │ │ │ └── index.html │ ├── 05 │ │ ├── 10 │ │ │ └── regex │ │ │ │ └── index.html │ │ ├── 17 │ │ │ └── work-along │ │ │ │ └── index.html │ │ ├── 24 │ │ │ └── advancedR │ │ │ │ └── index.html │ │ ├── 31 │ │ │ └── work-along │ │ │ │ └── index.html │ │ └── 03 │ │ │ └── Project │ │ │ └── index.html │ └── 06 │ │ ├── 01 │ │ └── mozilla-global-sprint │ │ │ └── index.html │ │ └── 07 │ │ └── work-along │ │ └── index.html ├── 2018 │ ├── 10 │ │ ├── 10 │ │ │ └── data-transformation │ │ │ │ └── index.html │ │ ├── 17 │ │ │ └── oo-field │ │ │ │ └── index.html │ │ ├── 24 │ │ │ └── time-series-Julia │ │ │ │ └── index.html │ │ ├── 31 │ │ │ └── EDA │ │ │ │ └── index.html │ │ └── 03 │ │ │ └── work-a-long │ │ │ └── index.html │ ├── 11 │ │ ├── 14 │ │ │ └── work-a-long │ │ │ │ └── index.html │ │ ├── 21 │ │ │ └── shiny-in-R │ │ │ │ └── index.html │ │ ├── 28 │ │ │ └── r-markdown │ │ │ │ └── index.html │ │ └── 07 │ │ │ └── data-structures │ │ │ └── index.html │ ├── 06 │ │ ├── 14 │ │ │ └── intro-R │ │ │ │ └── index.html │ │ ├── 21 │ │ │ └── workalong │ │ │ │ └── index.html │ │ ├── 28 │ │ │ └── NSE │ │ │ │ └── index.html │ │ └── 07 │ │ │ └── planning-session │ │ │ └── index.html │ ├── 07 │ │ ├── 12 │ │ │ └── work-along │ │ │ │ └── index.html │ │ ├── 19 │ │ │ └── spatialR │ │ │ │ └── index.html │ │ ├── 26 │ │ │ └── ggplot2 │ │ │ │ └── index.html │ │ └── 05 │ │ │ └── tidyR │ │ │ └── index.html │ ├── 08 │ │ ├── 16 │ │ │ └── regular-expressions │ │ │ │ └── index.html │ │ ├── 23 │ │ │ └── work-along │ │ │ │ └── index.html │ │ ├── 30 │ │ │ └── plotly │ │ │ │ └── index.html │ │ ├── 02 │ │ │ └── work-along │ │ │ │ └── index.html │ │ └── 09 │ │ │ └── learn_remote_computing_with_compute_canada │ │ │ └── index.html │ └── 09 │ │ ├── 12 │ │ └── planning │ │ │ └── index.html │ │ ├── 19 │ │ └── data-viz │ │ │ └── index.html │ │ └── 26 │ │ └── functions │ │ └── index.html ├── 2019 │ ├── 01 │ │ ├── 16 │ │ │ └── brainstorming │ │ │ │ └── index.html │ │ └── 23 │ │ │ └── dplyr-planning │ │ │ └── index.html │ ├── 03 │ │ ├── 13 │ │ │ └── eda │ │ │ │ └── index.html │ │ ├── 20 │ │ │ └── machineLearning │ │ │ │ └── index.html │ │ └── 27 │ │ │ └── workalong │ │ │ └── index.html │ ├── 04 │ │ ├── 10 │ │ │ └── workalong │ │ │ │ └── index.html │ │ ├── 17 │ │ │ └── iteration-purrr │ │ │ │ └── index.html │ │ ├── 24 │ │ │ └── workalong │ │ │ │ └── index.html │ │ └── 03 │ │ │ └── julia │ │ │ └── index.html │ └── 05 │ │ ├── 15 │ │ └── endofyear │ │ │ └── index.html │ │ ├── 01 │ │ └── workalong │ │ │ └── index.html │ │ └── 08 │ │ └── nse │ │ └── index.html ├── LICENSE ├── README.md ├── admin.md ├── codeOfConduct.md ├── css │ └── font-awesome │ │ ├── css │ │ ├── font-awesome.css │ │ └── font-awesome.min.css │ │ └── fonts │ │ ├── FontAwesome.otf │ │ ├── fontawesome-webfont.eot │ │ ├── fontawesome-webfont.svg │ │ ├── fontawesome-webfont.ttf │ │ └── fontawesome-webfont.woff ├── feed.xml ├── img │ ├── ScienceLabSticker.ai.png │ ├── about │ │ ├── 1.jpg │ │ ├── 2.jpg │ │ ├── 3.jpg │ │ └── 4.jpg │ ├── header-bg.jpg │ ├── logos │ │ ├── aetuts.jpg │ │ ├── creative-market.jpg │ │ ├── designmodo.jpg │ │ ├── envato.jpg │ │ ├── microlancer.jpg │ │ ├── themeforest.jpg │ │ └── wordpress.jpg │ ├── map-image.png │ ├── portfolio │ │ ├── dreams-thumbnail.png │ │ ├── dreams.png │ │ ├── escape-thumbnail.png │ │ ├── escape.png │ │ ├── golden-thumbnail.png │ │ ├── golden.png │ │ ├── roundicons-thumbnail.png │ │ ├── roundicons.png │ │ ├── startup-framework-thumbnail.png │ │ ├── startup-framework.png │ │ ├── treehouse-thumbnail.png │ │ └── treehouse.png │ └── team │ │ ├── 1.jpg │ │ ├── 2.jpg │ │ └── 3.jpg ├── index.html ├── js │ ├── agency.js │ ├── bootstrap.js │ ├── bootstrap.min.js │ ├── cbpAnimatedHeader.js │ ├── cbpAnimatedHeader.min.js │ ├── classie.js │ ├── contact_me.js │ ├── jqBootstrapValidation.js │ ├── jquery-1.11.0.js │ └── jquery.easing.min.js ├── lessons │ ├── 20190417_map │ │ ├── genes_treatment1_vs_ctrl.csv │ │ ├── genes_treatment2_vs_ctrl.csv │ │ ├── map_lesson_20190417.R │ │ └── map_lesson_master.R │ ├── Data_Structures │ │ ├── README.md │ │ └── cheat_sheet_data_structures.R │ ├── NSE │ │ ├── NSE_20180628.Rmd │ │ ├── NSE_20180628.html │ │ └── README.md │ ├── computecanada │ │ ├── Amino_Acid_Select.R │ │ ├── Example_slurm.sh │ │ ├── graham_access.sh │ │ ├── lessonplan.txt │ │ └── seqinr_3.4-5.tar.gz │ ├── dplyr │ │ └── lesson.md │ ├── dplyr_tutorial_lesson_20190123.R │ ├── ggplot2 │ │ ├── ggplot lesson June 26 2018 │ │ └── lesson.md │ ├── intro-r-tidyverse │ │ ├── LICENSE.md │ │ ├── data │ │ │ └── README.md │ │ └── tidy-verse-intro.md │ ├── lab3 │ │ ├── imgs │ │ │ ├── chunk_options.jpeg │ │ │ ├── chunk_setup.png │ │ │ ├── code_chunk.png │ │ │ ├── create_gh_document.png │ │ │ ├── create_ioslides_presentation.png │ │ │ ├── create_markdown.png │ │ │ ├── create_pdf_document.png │ │ │ ├── create_xaringan_presentation.png │ │ │ ├── enable_gh-pages.png │ │ │ ├── knit_button.png │ │ │ ├── menu0.png │ │ │ ├── menu1.png │ │ │ └── play.png │ │ └── lab3.Rmd │ ├── loops │ │ └── loops.md │ ├── template │ │ └── lesson.md │ └── tidyR │ │ ├── DataAnalysis.png │ │ ├── README.md │ │ ├── The_Fellowship_Of_The_Ring.csv │ │ ├── The_Return_Of_The_King.csv │ │ ├── The_Two_Towers.csv │ │ ├── example.csv │ │ ├── lesson.Rmd │ │ ├── lesson.md │ │ ├── lesson_files │ │ └── figure-markdown_github │ │ │ ├── unnamed-chunk-10-1.png │ │ │ ├── unnamed-chunk-11-1.png │ │ │ └── unnamed-chunk-9-1.png │ │ ├── lotr_tidy.csv │ │ ├── tidy_lotr.PNG │ │ └── untidy_lotr.png ├── mail │ └── contact_me.php ├── scripts │ └── updateCalendar.py ├── studyGroup.Rproj └── style.css ├── admin.md ├── codeOfConduct.md ├── css └── font-awesome │ ├── css │ ├── font-awesome.css │ └── font-awesome.min.css │ └── fonts │ ├── FontAwesome.otf │ ├── fontawesome-webfont.eot │ ├── fontawesome-webfont.svg │ ├── fontawesome-webfont.ttf │ └── fontawesome-webfont.woff ├── feed.xml ├── img ├── ScienceLabSticker.ai.png ├── about │ ├── 1.jpg │ ├── 2.jpg │ ├── 3.jpg │ └── 4.jpg ├── header-bg.jpg ├── logos │ ├── aetuts.jpg │ ├── creative-market.jpg │ ├── designmodo.jpg │ ├── envato.jpg │ ├── microlancer.jpg │ ├── themeforest.jpg │ └── wordpress.jpg ├── map-image.png ├── portfolio │ ├── dreams-thumbnail.png │ ├── dreams.png │ ├── escape-thumbnail.png │ ├── escape.png │ ├── golden-thumbnail.png │ ├── golden.png │ ├── roundicons-thumbnail.png │ ├── roundicons.png │ ├── startup-framework-thumbnail.png │ ├── startup-framework.png │ ├── treehouse-thumbnail.png │ └── treehouse.png └── team │ ├── 1.jpg │ ├── 2.jpg │ └── 3.jpg ├── index.html ├── js ├── agency.js ├── bootstrap.js ├── bootstrap.min.js ├── cbpAnimatedHeader.js ├── cbpAnimatedHeader.min.js ├── classie.js ├── contact_me.js ├── jqBootstrapValidation.js ├── jquery-1.11.0.js └── jquery.easing.min.js ├── lessons ├── 20150521 │ └── lesson.md ├── 20150528 │ └── loops.md ├── 20180614 │ ├── LICENSE.md │ ├── data │ │ └── README.md │ └── tidy-verse-intro.md ├── 20180621 │ ├── ggplot lesson June 26 2018 │ └── lesson.md ├── 20180628 │ ├── NSE_20180628.Rmd │ ├── NSE_20180628.html │ └── README.md ├── 20180705 │ ├── DataAnalysis.png │ ├── README.md │ ├── The_Fellowship_Of_The_Ring.csv │ ├── The_Return_Of_The_King.csv │ ├── The_Two_Towers.csv │ ├── example.csv │ ├── lesson.Rmd │ ├── lesson.md │ ├── lesson_files │ │ └── figure-markdown_github │ │ │ ├── unnamed-chunk-10-1.png │ │ │ ├── unnamed-chunk-11-1.png │ │ │ └── unnamed-chunk-9-1.png │ ├── lotr_tidy.csv │ ├── tidy_lotr.PNG │ └── untidy_lotr.png ├── 20180809 │ ├── Amino_Acid_Select.R │ ├── Example_slurm.sh │ ├── graham_access.sh │ ├── lessonplan.txt │ └── seqinr_3.4-5.tar.gz ├── 20181108 │ ├── README.md │ └── cheat_sheet_data_structures.R ├── 20181129 │ ├── imgs │ │ ├── chunk_options.jpeg │ │ ├── chunk_setup.png │ │ ├── code_chunk.png │ │ ├── create_gh_document.png │ │ ├── create_ioslides_presentation.png │ │ ├── create_markdown.png │ │ ├── create_pdf_document.png │ │ ├── create_xaringan_presentation.png │ │ ├── enable_gh-pages.png │ │ ├── knit_button.png │ │ ├── menu0.png │ │ ├── menu1.png │ │ └── play.png │ └── lab3.Rmd ├── 20190123 │ └── dplyr_tutorial_lesson_20190123.R ├── 20190417 │ ├── genes_treatment1_vs_ctrl.csv │ ├── genes_treatment2_vs_ctrl.csv │ ├── map_lesson_20190417.R │ └── map_lesson_master.R ├── 20191002 │ ├── alternatePlotting_20191002.Rmd │ └── alternatePlotting_20191002.html ├── 20191030 │ ├── 20191029_functions.Rmd │ └── 20191029_functions.html ├── 20191113 │ ├── IterationInR_lesson.R │ ├── IterationInR_master.R │ ├── genes_treatment1_vs_ctrl.csv │ └── genes_treatment2_vs_ctrl.csv ├── 20191120 │ ├── benchmarks.svg │ └── julia.ipynb ├── 20200122 │ ├── intro_rmd_fromSession.Rmd │ ├── rmarkdown_lesson.Rmd │ └── rmarkdown_lesson.html ├── 20200205 │ ├── 20200205_rstudioconf2020.Rmd │ └── 20200205_rstudioconf2020.html ├── 20200212 │ └── wellKeptWednesday.R ├── 20200226 │ ├── data │ │ ├── 2019Sep26_algae_alaska.xlsx │ │ └── 2019Sep26_algae_bc.xlsx │ ├── leaflet_intro_notes.Rmd │ └── leaflet_intro_notes.html ├── 20210113 │ ├── drawing.png │ ├── rmarkdown_lesson.Rmd │ ├── rmarkdown_lesson.html │ └── rmd_screenshot.png ├── 20210127 │ ├── alternatePlotting_20210127.Rmd │ └── alternatePlotting_20210127.html ├── 20210203 │ ├── workshop.Rmd │ └── workshop.html ├── 20210210 │ ├── 20210210_functions.Rmd │ ├── 20210210_functions.html │ ├── 20210210_lesson.R │ └── new_plot.jpg ├── 20210224 │ └── ShinyDemoApp │ │ ├── app.R │ │ ├── data │ │ ├── bcl-data.csv │ │ └── shiny-runapp.png │ │ ├── images │ │ ├── shiny-addinputs.png │ │ ├── shiny-addplot.png │ │ ├── shiny-inputs.png │ │ ├── shiny-layout.png │ │ ├── shiny-runapp.png │ │ └── shiny-stopapp.png │ │ ├── lesson.Rmd │ │ └── lesson.md ├── 20210303 │ ├── 20210303_iteration_v2.Rmd │ ├── 20210303_iteration_v2.html │ ├── lesson_script.R │ └── slide_38.jpg ├── 20210310 │ ├── basic_git_workflow.png │ ├── basic_git_workflow2.png │ ├── expanded_git_workflow.png │ ├── git_branches.png │ ├── introduction_to_git.Rmd │ ├── introduction_to_git.md │ └── rstudio_git_pane.png ├── 20210317 │ └── lesson.md ├── 20210324 │ ├── .RData │ ├── .Rhistory │ ├── Packages_Lesson.Rmd │ ├── package_state.png │ └── samplePackage │ │ ├── .Rbuildignore │ │ ├── .Rhistory │ │ ├── .gitignore │ │ ├── CODE_OF_CONDUCT.md │ │ ├── DESCRIPTION │ │ ├── LICENSE │ │ ├── LICENSE.md │ │ ├── NAMESPACE │ │ ├── R │ │ └── sample_class.R │ │ ├── README.Rmd │ │ ├── README.md │ │ ├── man │ │ └── figures │ │ │ └── README-pressure-1.png │ │ ├── samplePackage.Rproj │ │ ├── tests │ │ ├── testthat.R │ │ └── testthat │ │ │ └── test-sample_class.R │ │ └── vignettes │ │ ├── .gitignore │ │ └── my-vignette.Rmd ├── 20210331 │ ├── README.md │ ├── data │ │ ├── EDAWR_cases.csv │ │ ├── EDAWR_storms.csv │ │ ├── The_Fellowship_Of_The_Ring.csv │ │ ├── The_Return_Of_The_King.csv │ │ ├── The_Two_Towers.csv │ │ └── lotr_tidy.csv │ ├── lesson.Rmd │ ├── lesson.md │ └── www │ │ ├── DataAnalysis.png │ │ ├── tidy_lotr.png │ │ └── untidy_lotr.png ├── README.md └── template │ └── lesson.md ├── mail └── contact_me.php ├── scripts └── updateCalendar.py ├── studyGroup.Rproj └── style.css /.gitignore: -------------------------------------------------------------------------------- 1 | **/.DS_Store 2 | .Rproj.user/ 3 | README.html -------------------------------------------------------------------------------- /_config.yml: -------------------------------------------------------------------------------- 1 | #Setup ~~~ 2 | #Follow these 2 steps to set up your site. 3 | 4 | #Step 1: change YourUserName to the user name you chose on GitHub: 5 | user: UBC-R-Study-group 6 | 7 | #Step 2: give your study group a name and a short description: 8 | title: R Study Group 9 | 10 | description: "A study group." 11 | 12 | #Step 2: press the green 'Commit Changes' button at the bottom of this page. 13 | 14 | # That's it, your website is all set up! 15 | # You can see it at https://YourUserName.github.io/studyGroup/ 16 | # No need to change anything below this line. 17 | # To make your first event, check out the instructions at https://github.com/mozillascience/studyGroup#how-to-launch-a-new-event 18 | # Having trouble? Open a new issue at https://github.com/mozillascience/studyGroup/issues and we'll help you out ASAP! 19 | 20 | # Optional Configuration 21 | # None of these things need to be changed - but feel free! 22 | 23 | titleBackground: "https://s3-us-west-2.amazonaws.com/webmaker-kits/learning%402x.jpg" 24 | headlineSmall: "Welcome To Our Study Group!" 25 | headlineMain: "Let's Work Together" 26 | 27 | # Setup Google Calendar 28 | # Usage: 29 | # 1. create a new google account 30 | # 2. change 'USER' in the example urls below to the username of the google account you made for your calendar 31 | # 3. set calendar_on: True. 32 | 33 | calendar_on: TRUE 34 | calendar_embed_url: "https://www.google.com/calendar/embed?src=minisciencegirl@gmail.com" 35 | calendar_ical_url: "https://www.google.com/calendar/ical/minisciencegirl@gmail.com/public/basic.ics" 36 | 37 | 38 | #======================================== 39 | # No touching anything below this line :) 40 | #======================================== 41 | # Color settings (hex-codes without the leading hash-tag) 42 | color: 43 | primary: fed136 44 | secondary: fec503 45 | secondary-dark: 333 46 | 47 | # Build settings 48 | markdown: kramdown 49 | permalink: pretty 50 | future: true 51 | -------------------------------------------------------------------------------- /_data/members.yml: -------------------------------------------------------------------------------- 1 | - name: Travis Blimkie (co-organizer) 2 | affiliation: UBC - REW Hancock Lab 3 | github: travis-m-blimkie 4 | interests: 5 | - Bioinformatics 6 | - Shiny apps and packages 7 | - Teaching R 8 | 9 | - name: Jeremy Fan (co-organizer) 10 | affiliation: UBC - MSc Student, Jones Lab 11 | gituhub: zhemingfan 12 | interests: 13 | - Bioinformatics 14 | - Cancer genomics 15 | - R vs Python debates 16 | 17 | - name: Abhinav Checkervarty (PhD student) 18 | affiliation: UBC - Department of Experimental Medicine 19 | gituhub: abhi8138 20 | interests: 21 | - Bioinformatics 22 | - Machine learning 23 | - Software and tool development 24 | 25 | -------------------------------------------------------------------------------- /_includes/clients.html: -------------------------------------------------------------------------------- 1 | 2 | 14 | -------------------------------------------------------------------------------- /_includes/contact.html: -------------------------------------------------------------------------------- 1 |
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Come Say Hi

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We use GitHub to get coding help, talk about events and share files. Join us there!

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11 | Talk To Us 12 |
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16 | -------------------------------------------------------------------------------- /_includes/css/custom.css: -------------------------------------------------------------------------------- 1 | .team-member img.img-responsive { 2 | max-width: 110px; 3 | } 4 | .team-member i.fa { 5 | font-size: 110px; 6 | } 7 | -------------------------------------------------------------------------------- /_includes/footer.html: -------------------------------------------------------------------------------- 1 | 13 | -------------------------------------------------------------------------------- /_includes/head.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | {% if page.title %}{{ page.title }}{% else %}{{ site.title }}{% endif %} 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 27 | 28 | -------------------------------------------------------------------------------- /_includes/header.html: -------------------------------------------------------------------------------- 1 | 2 | 36 | 37 | 38 |
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What We Do

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and you can too!

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Skill Sharing

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Share your favorite coding skills and tools with your friends and colleagues in friendly, no-pressure work-alongs.

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Co-Working

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Get together to work on your coding projects, help each other out and share your work.

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Community Building

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Meet new people in your field, organization or community - and find out what we can do when we work together.

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38 | -------------------------------------------------------------------------------- /_includes/team.html: -------------------------------------------------------------------------------- 1 | 2 |
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Who We Are

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8 | We're scientists, students and researchers who want to work with you! 9 |

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20 | {% endif %} 21 | {% endif %} 22 | {% endif %} 23 |
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{{ member.name }}

28 | {% else %} 29 | 30 |

{{ member.name }}

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33 | {% if member.interests %} 34 | Interests: 35 |
    36 | {% for interest in member.interests %} 37 |
  •  {{ interest }}
    • 38 | {% endfor %} 39 |
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43 | {% endfor %} 44 |
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47 | -------------------------------------------------------------------------------- /_layouts/default.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | {% include head.html %} 5 | 6 | 7 | 8 | 9 | {% include header.html %} 10 | {% include services.html %} 11 | {% include portfolio_grid.html %} 12 | {% include contact.html %} 13 | {% include team.html %} 14 | {% include footer.html %} 15 | {% include js.html %} 16 | 17 | 18 | 19 | -------------------------------------------------------------------------------- /_layouts/style.css: -------------------------------------------------------------------------------- 1 | {% include css/bootstrap.min.css %} 2 | {% include css/agency.css %} 3 | {% include css/custom.css %} 4 | -------------------------------------------------------------------------------- /_plugins/hex_to_rgb.rb: -------------------------------------------------------------------------------- 1 | # Simple hex conversion Liquid filter plugin 2 | # 3 | # Convert a string of hex values into an array of decimal values. 4 | # 5 | # Examples: 6 | # {{ "aabbcc" | hex_to_rgb }} 7 | # # => [170, 187, 204] 8 | # 9 | # {{ "abc" | hex_to_rgb }} 10 | # # => [170, 187, 204] 11 | # 12 | # {{ "0a0b0c" | hex_to_rgb }} 13 | # # => [10, 11, 12] 14 | # 15 | # hexval - string of valid hexidecimal characters 16 | # 17 | # Returns an array of decimal values for the parse hex characters 18 | # 19 | 20 | module Jekyll 21 | module HexToRGB 22 | def hex_to_rgb(hexval) 23 | if hexval.length.even? 24 | hexval.scan(/../).map {|color| color.to_i(16)} 25 | else 26 | hexval.scan(/./).map {|color| (color+color).to_i(16)} 27 | end 28 | end 29 | end 30 | end 31 | 32 | Liquid::Template.register_filter(Jekyll::HexToRGB) 33 | -------------------------------------------------------------------------------- /_posts/2015-04-12-word.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Andrew's practice R lesson 3 | text: Andrew MacDonald will practice teaching introductory R, preparing for a SWC workshop at SFU 4 | location: Biodiversity Research Centre room 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/1 6 | date: 2015-04-15 7 | 8 | --- 9 | -------------------------------------------------------------------------------- /_posts/2015-04-22-introR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introduction to R 3 | text: Evan Morien will give a guided introduction to first steps in R - great for first-time R users! 4 | location: UBC Biodiversity Research Center, room 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/7 6 | date: 2015-04-22 7 | 8 | --- 9 | -------------------------------------------------------------------------------- /_posts/2015-04-29-introGit.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introduction to Version Control with Git 3 | text: Bill Mills will introduce Git - suitable for first-time Git users! 4 | location: UBC Biodiversity Research Center, Room 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/12 6 | date: 2015-04-29 7 | 8 | --- 9 | -------------------------------------------------------------------------------- /_posts/2015-05-01-hackyHour.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Hacky Hour 3 | text: We're meeting up at SFU to discuss starting Study Group events there. 4 | location: Highland Pub, SFU Burnaby Campus 5 | link: https://github.com/minisciencegirl/studyGroup/issues/13 6 | date: 2015-05-01 7 | 8 | --- 9 | -------------------------------------------------------------------------------- /_posts/2015-05-06-word.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: dplyr/magrittr Tutorial 3 | text: Come learn about the game-changing libraries dplyr and magrittr! 4 | location: BioDiv 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/6 6 | date: 2015-05-06 7 | 8 | --- 9 | -------------------------------------------------------------------------------- /_posts/2015-05-13-knitr.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introduction to knitr and Rmd 3 | text: Erica Acton will give a guided intro to the knitr package and R markdown! (for beginners) 4 | location: UBC Biodiversity Research Center, Rm224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/4 6 | date: 2015-05-13 7 | --- 8 | -------------------------------------------------------------------------------- /_posts/2015-05-19-ggplot2.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Making graphics with the ggplot2 library 3 | text: Jeff Stafford will explain how to create good-looking plots using ggplot2. 4 | location: BioDiv 224 - 2:30 pm 5 | link: https://github.com/minisciencegirl/studyGroup/issues/5 6 | date: 2015-05-19 7 | --- 8 | -------------------------------------------------------------------------------- /_posts/2015-05-21-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Our first ever R study group work-along! 3 | text: Hang out and work on our individual R projects along side each other 4 | location: BioDiv 225 5 | link: https://github.com/minisciencegirl/studyGroup/issues/15 6 | date: 2015-05-21 7 | 8 | --- 9 | -------------------------------------------------------------------------------- /_posts/2015-05-27-loops.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Study Group Meetup 3 | text: How to loop, not loop, and speed loops up 4 | location: Biodiv 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/11 6 | date: 2015-05-27 7 | 8 | --- 9 | -------------------------------------------------------------------------------- /_posts/2015-06-03-R_markdown_JennyBryan.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: The transformative power of R markdown, Git and GitHub 3 | text: Special workshop by Jenny Bryan 4 | location: Life Sciences Building (LSI 1330) 5 | link: https://github.com/minisciencegirl/studyGroup/issues/21 6 | date: 2015-06-03 7 | startTime: '14:00' 8 | endTime: '15:00' 9 | 10 | --- 11 | 12 | 13 | 14 | -------------------------------------------------------------------------------- /_posts/2015-06-04-sprint.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Mozilla Science Lab Global Sprint 3 | text: A two-day get-together to meet new people and hack on open science projects from around the world. 4 | location: Mozilla Vancouver 5 | link: https://github.com/minisciencegirl/studyGroup/issues/24 6 | date: 2015-06-04 7 | 8 | --- 9 | -------------------------------------------------------------------------------- /_posts/2015-06-10-R_Google.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: R + Googlespreadsheets 3 | text: Special workshop by Jenny Bryan 4 | location: LSI 1330 5 | link: https://github.com/minisciencegirl/studyGroup/issues/22 6 | date: 2015-06-10 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | 10 | --- 11 | -------------------------------------------------------------------------------- /_posts/2015-06-10-rstudio-webinar.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Watch live Rstudio webinar 3 | text: Live webinar (on projector) of Hadley Wickham talking about getting data into R 4 | location: BRC 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/26 6 | date: 2015-06-10 7 | 8 | --- 9 | -------------------------------------------------------------------------------- /_posts/2015-06-24-govt-environment.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Using R for creating open, repeatable State of Environment indicators 3 | text: Steph Hazlitt from Environment BC will be visiting to introduce their recently released environmental open data and R code. 4 | location: Biodiversity Building rm 224, UBC 5 | link: https://github.com/minisciencegirl/studyGroup/issues/28 6 | date: 2015-06-24 7 | startTime: '15:30' 8 | endTime: '16:30' 9 | 10 | --- 11 | -------------------------------------------------------------------------------- /_posts/2015-07-02-writing_packages.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Creating your own packages and objects 3 | text: Jeff Stafford will cover how to create packages using the devtools library as well as object-oriented programming in R 4 | location: BioDiv 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/14 6 | date: 2015-07-2 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-07-08-LatticeVsGgplot2.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Lattice Vs ggplot2 3 | text: Comparison between lattice and ggplot2 4 | location: BioDiv 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/35 6 | date: 2015-07-08 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | 10 | --- 11 | -------------------------------------------------------------------------------- /_posts/2015-07-15-work-along.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: R Work-along 3 | text: Come hang out for some cookies and R 4 | location: BioDiv 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/37 6 | date: 2015-07-15 7 | startTime: '15:00' 8 | endTime: '17:00' 9 | 10 | --- 11 | 12 | 13 | 14 | -------------------------------------------------------------------------------- /_posts/2015-07-24-hackyhour.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Hacky Hour 3 | text: Come meet people and hang out at the pub! 4 | location: Koerner's Pub 5 | link: https://github.com/minisciencegirl/studyGroup/issues/34 6 | date: 2015-07-24 7 | startTime: '16:30' 8 | endTime: '19:30' 9 | 10 | --- 11 | -------------------------------------------------------------------------------- /_posts/2015-08-12-datamunging.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Data Munging 3 | text: Learn how to use dplyr & plyr to manipulate dataframes 4 | location: LSI 1510 5 | link: https://github.com/minisciencegirl/studyGroup/issues/42 6 | date: 2015-08-12 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | 10 | --- 11 | -------------------------------------------------------------------------------- /_posts/2015-08-19-biomaRt.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Problem-solving with biomaRt by Jeff Stafford 3 | text: Learn to use the biomaRt web-interface package to retrieve the data you need 4 | location: BioDiv 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/52 6 | date: 2015-08-19 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-08-26-tree1.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Phylogenetic comparative analyses in R, Part 1 3 | text: How to map genotypic/ phenotypic variations to your trees? 4 | location: BioDiv 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/32 6 | date: 2015-08-26 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | 10 | --- 11 | -------------------------------------------------------------------------------- /_posts/2015-09-02-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Open Work-Along Session 3 | text: Bring your programming & open science projects to work on for a couple of hours, get help with your bugs and meet new colleagues! 4 | location: Biodiversity Room 224, UBC 5 | link: https://github.com/minisciencegirl/studyGroup/issues/55 6 | date: 2015-09-02 7 | startTime: '15:00' 8 | endTime: '17:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-09-08-heatmap.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Heatmap fun! 3 | text: Come learn how to use d3heatmap for your neatmaps 4 | location: BC Cancer Agency Dorothy Lam Room 5 | link: https://github.com/minisciencegirl/studyGroup/issues/47 6 | date: 2015-09-08 7 | startTime: '17:30' 8 | endTime: '18:30' 9 | 10 | --- 11 | -------------------------------------------------------------------------------- /_posts/2015-09-16-journal-club.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Journal Club on data organization and reproducible research! 3 | text: Learn how to set up your directory structure to better organize your data 4 | location: Pharmaceutical Sciences Building Room 3340 5 | link: https://github.com/minisciencegirl/studyGroup/issues/20 6 | date: 2015-09-16 7 | startTime: '16:00' 8 | endTime: '17:30' 9 | 10 | --- 11 | -------------------------------------------------------------------------------- /_posts/2015-09-23-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Study Group Co-Working Session 3 | text: Ask questions, get feedback, and learn new things while working on your own projects. 4 | location: UBC Biodiversity Bldg, Room 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/63 6 | date: 2015-09-23 7 | startTime: '15:00' 8 | endTime: '17:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-09-30-DiagrammeR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: DiagrammeR for your visualization needs! 3 | text: Learn how and why you can use DiagrammeR with the creator of DiagrammeR 4 | location: UBC Biodiversity Bldg, room 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/48 6 | date: 2015-09-30 7 | startTime: '16:00' 8 | endTime: '17:00' 9 | 10 | --- 11 | -------------------------------------------------------------------------------- /_posts/2015-10-07-introPython.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introduction to Python 3 | text: An introduction to Python for first-time programmers. 4 | location: UBC Biodiversity Bldg, Room 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/62 6 | date: 2015-10-07 7 | startTime: '15:30' 8 | endTime: '16:30' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-10-16-journalClub.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Study Group Journal Club Meeting 3 | text: We're reading two papers on open access publishing & open data - join in the discussion! 4 | location: UBC Biodiversity Bldg, Room 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/64 6 | date: 2015-10-14 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-10-21-python.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Intro to Python, Part 2 3 | text: An introduction to for loops and conditions in Python. 4 | location: UBC Main Campus, Biodiversity Bldg Room 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/68 6 | date: 2015-10-21 7 | startTime: '15:30' 8 | endTime: '16:30' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-10-28-work-along.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-along Session 3 | text: Hang out and work together with some cookies 4 | location: BioDiv 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/66 6 | date: 2015-10-28 7 | startTime: '15:00' 8 | endTime: '17:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-11-04-pandas.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Study Group Meetup 3 | text: Pandas introduction - continuing with python 4 | location: Biodiversity Research Centre 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/69 6 | date: 2015-11-04 7 | startTime: '15:30' 8 | endTime: '16:30' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-11-18-vegan.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Let's learn vegan together! 3 | text: Coworking session to learn the vegan R package 4 | location: BioDiv 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/54 6 | date: 2015-11-18 7 | startTime: '15:00' 8 | endTime: '17:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-11-25-veganwithGavin.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Learning vegan with Gavin Simpson 3 | text: Bring any questions you have about the SWC vegan lessons 4 | location: BioDiv 224 - 3pm 5 | link: https://github.com/minisciencegirl/studyGroup/issues/54 6 | date: 2015-11-25 7 | --- 8 | -------------------------------------------------------------------------------- /_posts/2015-12-02-reshape2.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Reformatting data with reshape2 & tidyr 3 | text: How to use reshape2 and some general R tips (like grep()) to make data easier to work with. 4 | location: BioDiv 224 - 3pm 5 | link: https://github.com/minisciencegirl/studyGroup/issues/72 6 | date: 2015-12-02 7 | --- 8 | -------------------------------------------------------------------------------- /_posts/2015-12-09-Pandas2.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Python Pandas 2 + Other python 3 | text: Pandas continues! 4 | location: UBC Biodiv 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/74 6 | date: 2015-12-09 7 | startTime: '15:30' 8 | endTime: '16:30' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-12-16-docker.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introduction to Docker 3 | text: A first introduction to using Docker for reproducible research. 4 | location: UBC Main Campus, Beaty Biodiversity Bldg room 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/75 6 | date: 2015-12-16 7 | startTime: '15:30' 8 | endTime: '00:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2015-12-18-holiday.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Study Group Holiday Hacky Hour 3 | text: Bring everyone in the scientific coding and open science community for a year end wrap party! 4 | location: Charlatan, Commercial x Grant 5 | link: https://github.com/minisciencegirl/studyGroup/issues/73 6 | date: 2015-12-18 7 | startTime: '18:00' 8 | endTime: '00:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-01-11-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Co-Working Session 3 | text: Come work on your coding projects with us, and feel free to ask for help and feedback! All languages, disciplines and skill levels welcome. 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/80 6 | date: 2016-01-11 7 | startTime: '13:00' 8 | endTime: '15:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-01-18-pypackages.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Packages in Python 3 | text: Learn how to make basic packages in Python, and explore Python's module system. 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/82 6 | date: 2016-01-18 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-01-25-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Co-Working Session 3 | text: Come work on your coding projects with us, and feel free to ask for help and feedback! All languages, disciplines and skill levels welcome. 4 | location: UBC Biodiversity Bldg, Rm 225 5 | link: https://github.com/minisciencegirl/studyGroup/issues/83 6 | date: 2016-01-25 7 | startTime: '13:00' 8 | endTime: '15:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-02-01-rassert.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Assertions in R 3 | text: Exploring the various ways to make assertions about code and data in R. 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/84 6 | date: 2016-02-01 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-02-15-pandas.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introduction to Pandas 3 | text: Learn how to make and use R-like dataframes in Python, using Pandas. 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/88 6 | date: 2016-02-15 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-02-22-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Co-Working Session 3 | text: Come work on your coding projects with us, and feel free to ask for help and feedback! All languages, disciplines and skill levels welcome. 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/87 6 | date: 2016-02-22 7 | startTime: '13:00' 8 | endTime: '15:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-02-29-broom.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introduction to R's Broom 3 | text: Introduction to Broom, a tool for tidying up statistical objects into convenient R dataframes. 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/86 6 | date: 2016-02-29 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-03-07-shiny.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Intro to R-Shiny & Leaflet 3 | text: Simon Goring will be showing us how to make web apps in R, including maps from Leaflet 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/98 6 | date: 2016-03-07 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-03-14-cloud.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introduction to Cloud Computing 3 | text: Walk through the basics of using Amazon Web Services to do fast and powerful data analysis in the cloud. 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/90 6 | date: 2016-03-14 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-03-21-CytoscapeWithJulia.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Cytoscape, R and Networks Visualizations 3 | text: Want to learn how you can integrate cytoscape and R for network visualization? 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/8 6 | date: 2016-03-21 7 | startTime: '13:00' 8 | endTime: '15:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-04-04-GuestSpeaker.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: UBC Data Science Day 3 | text: Come and meet data scientists from tech, gov't and university! 4 | location: UBC Koerner Library, Room 226 5 | link: https://github.com/minisciencegirl/studyGroup/issues/100 6 | date: 2016-04-04 7 | startTime: '13:00' 8 | endTime: '17:30' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-04-11-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Co-Working Session 3 | text: Come work on your coding projects with us, and feel free to ask for help and feedback! All languages, disciplines and skill levels welcome. 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/93 6 | date: 2016-04-11 7 | startTime: '13:00' 8 | endTime: '15:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-04-18-pyplot.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Plotting in Python 3 | text: Learn how to make elegant scientific plots in Python. 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/92 6 | date: 2016-04-18 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-04-25-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Co-Working Session 3 | text: Come work on your coding projects with us, and feel free to ask for help and feedback! All languages, disciplines and skill levels welcome. 4 | location: UBC Biodiversity Bldg, Rm 224 5 | link: https://github.com/minisciencegirl/studyGroup/issues/94 6 | date: 2016-04-25 7 | startTime: '13:00' 8 | endTime: '15:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-05-20-pandas.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Managing Data in Python with Pandas 3 | text: Learn how to read, manage and plot data in Python using the Pandas package. 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/112 6 | date: 2016-05-20 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-05-27-ggplot2.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt: Plotting in R with ggplot2" 3 | text: "A beginner's introduction to plotting in R using ggplot2" 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/113 6 | date: 2016-05-27 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-06-03-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Co-Working Session 3 | text: Come work on your coding projects with us, and feel free to ask for help and feedback! All languages, disciplines and skill levels welcome. 4 | location: Koerner Library, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/114 6 | date: 2016-06-03 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-06-10-stringr.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt: Text manipulation with stirngr and lubridate" 3 | text: "A beginner's introduction to analyzing text in R." 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/115 6 | date: 2016-06-10 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-06-17-network.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Introduction to Network Analysis" 3 | text: "Theory and implementation in R of basic network analysis." 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/126 6 | date: 2016-06-17 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-06-24-linear-regression.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt: Linear Regression Theory & Implementation in R" 3 | text: "A beginner's introduction to the basics of data fitting theory in R." 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/120 6 | date: 2016-06-24 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-07-08-lm-glm.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt: Fitting Data with lm and glm" 3 | text: "A beginner's introduction to fitting data with R's built-in tools." 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/121 6 | date: 2016-07-08 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-07-15-numerical.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Numerical Errors & How to Deal" 3 | text: "An introduction to the origin of numerical errors in any language, and how to avoid common pitfalls." 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/119 6 | date: 2016-07-15 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-07-22-knitr.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt: Making Beautiful Documents with knitr and Rmd" 3 | text: "A beginner's introduction to making reports, PDFs and web documents from code and data, directly in RStudio." 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/122 6 | date: 2016-07-22 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-07-29-hackyhour.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Hacky Hour" 3 | text: "Come hang out with the Study Group community - everyone welcome!" 4 | location: Koerner Pub 5 | link: https://github.com/minisciencegirl/studyGroup/issues/129 6 | date: 2016-07-29 7 | startTime: '17:00' 8 | endTime: '20:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-07-29-remake.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Remake: managing complicated projects in R" 3 | text: "An introduction to remake, a tool for intelligently running and re-running parts of an R project." 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/130 6 | date: 2016-07-29 7 | startTime: '16:00' 8 | endTime: '17:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-08-05-dplyr.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt: Data wrangling with dplyr and magrittr" 3 | text: "A beginner's introduction to manipulating data tables in R." 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/123 6 | date: 2016-08-05 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-08-12-purrr.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Functional programming, iteration and aggregation in R using purrr 3 | text: Learn the basics of functional programming in R, using the purrr package. 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/131 6 | date: 2016-08-12 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-08-19-tidyr.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt: Data tidying with tidyr and reshape2" 3 | text: "A beginner's introduction to transforming irregular data into tidy tables in R." 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/124 6 | date: 2016-08-19 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-08-26-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Co-Working Session 3 | text: Come work on your coding projects with us, and feel free to ask for help and feedback! All languages, disciplines and skill levels welcome. 4 | location: Koerner Library, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/114 6 | date: 2016-08-26 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-09-12-Git-together.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Git together and fall session planning" 3 | text: "Come meet the study group and share topics you are interested in" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/134 6 | date: 2016-09-12 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-09-19-ggplot2.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt" 3 | text: "Plotting with ggplot2" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/136 6 | date: 2016-09-19 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-09-26-AdvancedR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Advanced R" 3 | text: "Deepen your knowledge of R and work through Hadley Wickham's Book " 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2016-09-26 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-10-03-dplyr.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt" 3 | text: "Clean and Reproducible Data Manipulation with dplyr" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/137 6 | date: 2016-10-03 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-10-17-advancedR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Advanced R" 3 | text: "Deepen your knowledge of R and work through Hadley Wickham's Book: Style" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2016-10-17 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-10-21-hackyhour.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Vancouver Fall Hacky Hour 3 | text: Bring everyone in the scientific coding, data science and open science community for a meet & greet! 4 | location: TBD 5 | link: https://github.com/minisciencegirl/studyGroup/issues/140 6 | date: 2016-10-21 7 | startTime: '18:00' 8 | endTime: '00:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-10-24-advancedR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Advanced R" 3 | text: "Deepen your knowledge of R and work through Hadley Wickham's Book: Subsetting" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2016-10-24 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-10-31-knitr.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt" 3 | text: "How to render your R code with knitr and Rmarkdown?" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/138 6 | date: 2016-10-31 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-11-07-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Co-working" 3 | text: "Bring your coding problems and hang out" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2016-11-07 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-11-14-advancedR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Advanced R" 3 | text: "Deepen your knowledge of R and work through Hadley Wickham's Book: Functions" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2016-11-14 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-11-21-markjohnson.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Sonifying time series data" 3 | text: "Want to hear your data? Come to a special seminar presented by Mark Johnson!" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/149 6 | date: 2016-11-21 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-11-28-advancedR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Advanced R" 3 | text: "Deepen your knowledge of R and work through Hadley Wickham's Book: Environments" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2016-11-28 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-12-12-advancedR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Advanced R" 3 | text: "Deepen your knowledge of R and work through Hadley Wickham's Book: Exceptions & Debugging" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2016-12-12 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2016-12-16-HolidayParty.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Holiday Party!" 3 | text: "Come join us for some holiday cheer and yummy food/drinks" 4 | location: TBD 5 | link: https://github.com/minisciencegirl/studyGroup/issues/152 6 | date: 2016-12-16 7 | startTime: '19:00' 8 | endTime: '23:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-01-11-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Co-working" 3 | text: "Join us with your coding projects and to plan the winter semester 2017!" 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/151 6 | date: 2017-01-11 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-01-18-coworking.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Co-working" 3 | text: "Join us with your coding projects and to plan the winter semester 2017!" 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/151 6 | date: 2017-01-18 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-01-25-Project.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Co-working Project: Should I stay or should I go? " 3 | text: "Come work on a group project together to hone your skills in Shiny, Leaflet, API, and time series analysis" 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/154 6 | date: 2017-01-25 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-02-01-Project.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Co-working Project: Should I stay or should I go? " 3 | text: "Come work on a group project together to hone your skills in Shiny, Leaflet, API, and time series analysis" 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/154 6 | date: 2017-02-01 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-02-15-dplyr.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Utility Belt: dplyr" 3 | text: "Fast, clean, and reproducible manipulation of your dataframes!" 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/158 6 | date: 2017-02-15 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-02-22-Project.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Co-working Project: Should I stay or should I go? " 3 | text: "Come work on a group project together to hone your skills in Shiny, Leaflet, API, and time series analysis" 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/154 6 | date: 2017-02-22 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-03-08-advancedR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Advanced R" 3 | text: "Deepen your knowledge of R and work through Hadley Wickham's Book: Functional Programming" 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2017-03-08 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-03-15-tidyR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Utility Belt: tidyR" 3 | text: "Taming your messy dataframe!" 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/159 6 | date: 2017-03-15 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-03-22-Project.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Co-working Project: Should I stay or should I go? " 3 | text: "Come work on a group project together to hone your skills in Shiny, Leaflet, API, and time series analysis" 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/154 6 | date: 2017-03-22 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-03-29-advancedR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Advanced R" 3 | text: "Deepen your knowledge of R and work through Hadley Wickham's Book: Functionals" 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2017-03-29 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-04-12-ggplot2.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt: Plotting with ggplot2 " 3 | text: "To boldy plot what no one has plotted before! Learn ggplot2 - because everyone needs to visualize and sanity check their data at some point." 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/162 6 | date: 2017-04-12 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-04-19-Project.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Co-working Project: Should I stay or should I go? " 3 | text: "Come work on a group project together to hone your skills in Shiny, Leaflet, API, and time series analysis" 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/154 6 | date: 2017-04-19 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-04-26-advancedR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Advanced R" 3 | text: "Deepen your knowledge of R and work through Hadley Wickham's Book: Non-standard evaluation" 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2017-04-26 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-05-03-Project.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Co-working Project: Should I stay or should I go? " 3 | text: "Come work on a group project together to hone your skills in Shiny, Leaflet, API, and time series analysis" 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/154 6 | date: 2017-05-03 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-05-10-regex.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "R Utility Belt: Regular Expressions and Stringr" 3 | text: "Be String Savvy! Learn regex and the stringr package and make your data-cleaning life easier." 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/164 6 | date: 2017-05-10 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-05-17-work-along.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Study Group Co-Working Session" 3 | text: "Ask questions, get feedback, and learn new things while working on your own projects. All levels!" 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/165 6 | date: 2017-05-17 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-05-24-advancedR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Advanced R" 3 | text: "Deepen your knowledge of R and work through Hadley Wickham's Book: Function Operators" 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/139 6 | date: 2017-05-24 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-05-31-work-along.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Study Group Co-Working Session" 3 | text: "Ask questions, get feedback, and learn new things while working on your own projects. All levels!" 4 | location: Koerner Library 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/165 6 | date: 2017-05-31 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-06-01-mozilla-global-sprint.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Mozilla Global Sprint 2017" 3 | text: "The Global Sprint is a fun community event bringing people from around the world together to collaborate on open projects, such as developing open source software, building open tools, writing curriculum, planning events, and more. Sign up ahead of time at https://ti.to/Mozilla/global-sprint-vancouver" 4 | location: Koerner Library, UBC, Room K217 5 | link: https://github.com/minisciencegirl/studyGroup/issues/166 6 | date: 2017-06-01 7 | startTime: '09:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2017-06-07-work-along.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Study Group Co-Working Session" 3 | text: "Ask questions, get feedback, and learn new things while working on your own projects. All levels!" 4 | location: Koerner Library, UBC, Room 153 5 | link: https://github.com/minisciencegirl/studyGroup/issues/165 6 | date: 2017-06-07 7 | startTime: '15:00' 8 | endTime: '16:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-06-07-planning-session.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Study Group Planning Session for 2018" 3 | text: "Help us plan our 2018 Study Group Session, bring ideas, and suggest topics you are interested in. All levels!" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/170 6 | date: 2018-06-07 7 | startTime: '15:30' 8 | endTime: '16:30' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-06-13-intro-R.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introduction to R via the Tidyverse 3 | text: Come learn R! 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/174 6 | date: 2018-06-14 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-06-21-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-a-long session 3 | text: Come ask for help and coding feedback from friendly people, or work on your current coding project and get some feedback! 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/175 6 | date: 2018-06-21 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-06-28-NSE.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Non-standard evaluation in R 3 | text: Join us for a hands-on session on Non-standard evaluation in R! 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/176 6 | date: 2018-06-28 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-07-05-tidyR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introduction to tidyR (Tidyverse) 3 | text: Want to know how to wrangle your messy dataframe? 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/178 6 | date: 2018-07-05 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-07-12-work-along.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-a-long session 3 | text: Come ask for help and coding feedback from friendly people, or work on your current coding project and get some feedback! 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/181 6 | date: 2018-07-12 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-07-19-spatialR.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Spatial data in R 3 | text: Come learn about how you can work with spatial data in R! 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/182 6 | date: 2018-07-19 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-07-26-ggplot2.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: How to plot like a master plotter with ggplot2! 3 | text: Learn ggplot2 - because everyone needs to visualize and sanity check their data at some point. 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/185 6 | date: 2018-07-26 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-08-02-work-along.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-a-long session 3 | text: Come ask for help and coding feedback from friendly people, or work on your current coding project and get some feedback! 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/186 6 | date: 2018-08-02 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-08-09-learn_remote_computing_with_compute_canada.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: Learn about remote computing with Compute Canada resources 3 | text: Come learn how to harness the power of remote computer and do high-performance computing with Compute Canada resources 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/187 6 | date: 2018-08-09 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-08-16-regular-expressions.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: Learn about searching and manipulating text with regular expressions 3 | text: Come learn how you can use regular expressions to search and manipulate text in R! 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/192 6 | date: 2018-08-16 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-08-23-work-along.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-a-long session 3 | text: Come ask for help and coding feedback from friendly people, or work on your current coding project and get some feedback! 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/191 6 | date: 2018-08-23 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-08-30-plotly.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Interactive plots in R! 3 | text: Come learn about how to use plotly in R to make interactive visualizations! 4 | location: Koerner Library Room 216 5 | link: https://github.com/minisciencegirl/studyGroup/issues/193 6 | date: 2018-08-30 7 | startTime: '09:00' 8 | endTime: '10:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-09-12-planning.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Study Group Planning Session for 2018" 3 | text: "Help us plan our 2018 Study Group Session, bring ideas, and suggest topics you are interested in. All levels!" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/1 6 | date: 2018-09-12 7 | startTime: '12:30' 8 | endTime: '13:30' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-09-19-data-viz.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Data Visualization in R" 3 | text: "Come learn about data visualization in R as we work through Chapter 3 of R for Data Science" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/3 6 | date: 2018-09-19 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-09-26-functions.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Functions in R" 3 | text: "Come learn about functions in R as we work through the Functions Chapter from Advanced R" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/4 6 | date: 2018-09-26 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-10-03-work-a-long.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Work-a-long session" 3 | text: "Come work on your own project while you get and give help from/to your peers! All levels of R users welcome!" 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/5 6 | date: 2018-10-03 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-10-10-data-transformation.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Data Tranformation in R 3 | text: Come learn about data transformation as we work through the Data Transformation Chapter from *R for Data Science* 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/9 6 | date: 2018-10-10 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-10-17-oo-field.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Object Oriented field guide in R 3 | text: Come learn about Object Oriented programming in R as we work through the Object Oriented field guide from *Advanced R* 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/10 6 | date: 2018-10-17 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-10-24-time-series-Julia.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Time Series and Julia 3 | text: Come learn about time series and an introduction to the the Julia programming language. 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/11 6 | date: 2018-10-24 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-10-31-EDA.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Exploratory Data Analysis in R 3 | text: Come learn about Exploratory Data Analysis in R as we work through the Exploratory Data Analysis chapter from R for Data Science 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/12 6 | date: 2018-10-31 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-11-07-data-structures.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Data Structures in R 3 | text: Come learn about data structures in R as we work through the Data Structures chapter from Advanced R 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/13 6 | date: 2018-11-07 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-11-21-shiny-in-R.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Shiny in R 3 | text: Come learn about Shiny in R 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/15 6 | date: 2018-11-21 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-11-28-r-markdown.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: R Markdown 3 | text: Come learn about R Markdown, a reproducible document format. 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/16 6 | date: 2018-11-28 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2018-14-11-work-a-long.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-a-long session 3 | text: Come work on your own project while you get and give help from/to your peers! All levels of R users welcome! 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/14 6 | date: 2018-11-14 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-01-16-brainstorming.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Winter 2019 Brainstorming Session 3 | text: Come help us plan out this semester! All levels of R users welcome! 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/24 6 | date: 2019-01-16 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-01-23-dplyr-planning.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: dplyr intro and winter 2019 session planning 3 | text: Come learn how to use dplyr and finalize our 2019 session! All levels of R users welcome! 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/25 6 | date: 2019-01-23 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-03-13-eda.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Exploratory Data Analysis 3 | text: Come join us as we work our way through an example data set. 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/35 6 | date: 2019-03-13 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-03-20-machineLearning.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Machine Learning in R 3 | text: An introduction to machine learning in R, led by Ian Flores. 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/36 6 | date: 2019-03-20 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-03-27-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-a-Long 3 | text: Work-a-long session, bring your R, python, Julia, etc. questions or projects 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/37 6 | date: 2019-03-27 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-04-03-julia.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: The Julia Programming Language 3 | text: Come by for an intro to the Julia language 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/38 6 | date: 2019-04-03 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-04-10-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-A-Long Session 3 | text: Bring you R, Python or Julia problems or questions! 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/39 6 | date: 2019-04-10 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-04-17-iteration-purrr.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Iteration and purrr map 3 | text: Join us for a session on using the map function to iterate on lists in R! 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/40 6 | date: 2019-04-17 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-04-24-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-A-Long Session 3 | text: Bring you R, Python or Julia problems or questions! 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/41 6 | date: 2019-04-24 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-05-01-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-A-Long Session 3 | text: Bring you R, Python or Julia problems or questions! 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/43 6 | date: 2019-05-01 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-05-08-nse.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Non-Standard Evaluation in R 3 | text: Join us for an NSE tutorial! 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/42 6 | date: 2019-05-08 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-05-15-endofyear.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: End-of-Year Party 3 | text: Come by for the UBC R Study Group end-of-year social get-together! 4 | location: Koerner Library, UBC, Room 216 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/44 6 | date: 2019-05-15 7 | startTime: '13:00' 8 | endTime: '13:50' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-10-09-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-a-long 3 | text: Open work-a-long session. Bring your code or questions to get advice and chat with fellow coders! 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/ 6 | date: 2019-10-09 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-10-16-git.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Git and Version Control 3 | text: An introduction to using Git/Github for project and version management. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/ 6 | date: 2019-10-16 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-10-23-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-A-Long 3 | text: Join us for a Work-A-Long session. Bring your code and any questions. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/76 6 | date: 2019-10-23 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-10-30-functions.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Functions in R 3 | text: A guide to using functions in R to write better, more efficient code. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/77 6 | date: 2019-10-30 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-11-06-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-A-Long 3 | text: Join us for a Work-A-Long session. Bring your code and any questions. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/78 6 | date: 2019-11-06 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-11-13-iteration.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Iteration in R 3 | text: Join us for an introduction to iteration and working with lists in R. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/79 6 | date: 2019-11-13 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-11-20-julia.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: An Intro to Julia 3 | text: Come by for this introductory talk to the Julia programming language. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/80 6 | date: 2019-11-20 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-11-27-finalSession.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Final Session 3 | text: Join us for our final session of the term. Come by for news of what's coming in 2020. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/81 6 | date: 2019-11-27 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2019-12-13-happHolidays.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Happy Holidays from the UBC R Study Group Team 3 | text: Have a wonderful holiday season. 4 | location: UBC 5 | link: https://github.com/UBC-R-Study-group/studyGroup/ 6 | date: 2019-12-13 7 | startTime: '12:00' 8 | endTime: '23:59' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-01-15-winter2020FirstSession.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: CANCELED DUE TO WEATHER 3 | text: Session canceled as campus is closed because of snow 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/83 6 | date: 2020-01-15 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-01-22-introSession.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Opening session and RMarkdown Introduction 3 | text: Come to the first R Study Group of the term to hear what's planned, as well as a brief introduction to RMarkdown 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/85 6 | date: 2020-01-22 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-01-29-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Workalong Session 3 | text: Come to ask questions or chat with fellow programmers 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/87 6 | date: 2020-01-29 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-02-12-introTidyTuesday.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Tidy Tuesday Introduction 3 | text: Join us for a interactive work-a-long through a public dataset in R 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/89 6 | date: 2020-02-12 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-02-12-readingWeek.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Reading Week - No Study Group 3 | text: No lesson this week, but we'll be back on the 26th with a workalong! 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/91 6 | date: 2020-02-19 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-03-04-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-A-Long 3 | text: Join us for a co-working session. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/95 6 | date: 2020-03-04 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-03-11-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-A-Long 3 | text: Join us for a co-working session. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/97 6 | date: 2020-03-11 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-03-18-WellKeptWednesday.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Well-Kept Wednesday 3 | text: Come join us for an interactive exploration of a public dataset 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/98 6 | date: 2020-03-18 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-03-25-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Work-A-Long 3 | text: Join us for a co-working session, or come by with your coding questions. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/99 6 | date: 2020-03-25 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-04-01-RPackages.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Intro to Making an R Package 3 | text: Learn how to turn your script full of functions into your very own R package. 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/100 6 | date: 2020-04-01 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2020-04-08-EndOfTerm.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: End of Term Meetup 3 | text: Come by for our final session of the term. Snacks included! 4 | location: Koerner Library, UBC, Room 548-552 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/101 6 | date: 2020-04-08 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2021-01-13-introSession.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Introductions and RMarkdown Tutorial 3 | text: Come to the first R Study Group of the term to hear what's planned, as well as a brief tutorial on RMarkdown 4 | location: Zoom Meeting 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/115 6 | date: 2021-01-13 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2021-01-20-workalong.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Workalong Session 3 | text: Come to ask questions or chat with fellow programmers 4 | location: Zoom Meeting 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/116 6 | date: 2021-01-20 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2021-03-03-iteration.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Interation with purrr 3 | text: Get an introduction to using the map functions in R 4 | location: Zoom Meeting 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/124 6 | date: 2021-03-03 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2021-03-10-git_introduction.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: An introduction to git 3 | text: Learn the basics of git and Github 4 | location: Zoom Meeting 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/125 6 | date: 2021-03-10 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2021-03-17-git_rstudio.markdown: -------------------------------------------------------------------------------- 1 | --- 2 | title: Using git with RStudio 3 | text: Come by for a practical lesson on using git with RStudio 4 | location: Zoom Meeting 5 | link: https://github.com/UBC-R-Study-group/studyGroup/issues/126 6 | date: 2021-03-17 7 | startTime: '13:00' 8 | endTime: '14:00' 9 | --- 10 | -------------------------------------------------------------------------------- /_posts/2021-03-24-Rpackagedevelopment.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: R Package Development 3 | text: Come learn how to create your very own R package 4 | location: 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Closes the Responsive Menu on Menu Item Click 24 | $('.navbar-collapse ul li a').click(function() { 25 | $('.navbar-toggle:visible').click(); 26 | }); 27 | 28 | $('div.modal').on('show.bs.modal', function() { 29 | var modal = this; 30 | var hash = modal.id; 31 | window.location.hash = hash; 32 | window.onhashchange = function() { 33 | if (!location.hash){ 34 | $(modal).modal('hide'); 35 | } 36 | } 37 | }); -------------------------------------------------------------------------------- /_site/js/cbpAnimatedHeader.js: -------------------------------------------------------------------------------- 1 | /** 2 | * cbpAnimatedHeader.js v1.0.0 3 | * http://www.codrops.com 4 | * 5 | * Licensed under the MIT license. 6 | * http://www.opensource.org/licenses/mit-license.php 7 | * 8 | * Copyright 2013, Codrops 9 | * http://www.codrops.com 10 | */ 11 | var cbpAnimatedHeader = (function() { 12 | 13 | var docElem = document.documentElement, 14 | header = document.querySelector( '.navbar-fixed-top' ), 15 | didScroll = false, 16 | changeHeaderOn = 300; 17 | 18 | function init() { 19 | window.addEventListener( 'scroll', function( event ) { 20 | if( !didScroll ) { 21 | didScroll = true; 22 | setTimeout( scrollPage, 250 ); 23 | } 24 | }, false ); 25 | } 26 | 27 | function scrollPage() { 28 | var sy = scrollY(); 29 | if ( sy >= changeHeaderOn ) { 30 | classie.add( header, 'navbar-shrink' ); 31 | } 32 | else { 33 | classie.remove( header, 'navbar-shrink' ); 34 | } 35 | didScroll = false; 36 | } 37 | 38 | function scrollY() { 39 | return window.pageYOffset || docElem.scrollTop; 40 | } 41 | 42 | init(); 43 | 44 | })(); -------------------------------------------------------------------------------- /_site/js/cbpAnimatedHeader.min.js: -------------------------------------------------------------------------------- 1 | /** 2 | * cbpAnimatedHeader.min.js v1.0.0 3 | * http://www.codrops.com 4 | * 5 | * Licensed under the MIT license. 6 | * http://www.opensource.org/licenses/mit-license.php 7 | * 8 | * Copyright 2013, Codrops 9 | * http://www.codrops.com 10 | */ 11 | var cbpAnimatedHeader=(function(){var b=document.documentElement,g=document.querySelector(".cbp-af-header"),e=false,a=300;function f(){window.addEventListener("scroll",function(h){if(!e){e=true;setTimeout(d,250)}},false)}function d(){var h=c();if(h>=a){classie.add(g,"cbp-af-header-shrink")}else{classie.remove(g,"cbp-af-header-shrink")}e=false}function c(){return window.pageYOffset||b.scrollTop}f()})(); -------------------------------------------------------------------------------- /_site/js/classie.js: -------------------------------------------------------------------------------- 1 | /*! 2 | * classie - class helper functions 3 | * from bonzo https://github.com/ded/bonzo 4 | * 5 | * classie.has( elem, 'my-class' ) -> true/false 6 | * classie.add( elem, 'my-new-class' ) 7 | * classie.remove( elem, 'my-unwanted-class' ) 8 | * classie.toggle( elem, 'my-class' ) 9 | */ 10 | 11 | /*jshint browser: true, strict: true, undef: true */ 12 | /*global define: false */ 13 | 14 | ( function( window ) { 15 | 16 | 'use strict'; 17 | 18 | // class helper functions from bonzo https://github.com/ded/bonzo 19 | 20 | function classReg( className ) { 21 | return new RegExp("(^|\\s+)" + className + "(\\s+|$)"); 22 | } 23 | 24 | // classList support for class management 25 | // altho to be fair, the api sucks because it won't accept multiple classes at once 26 | var hasClass, addClass, removeClass; 27 | 28 | if ( 'classList' in document.documentElement ) { 29 | hasClass = function( elem, c ) { 30 | return elem.classList.contains( c ); 31 | }; 32 | addClass = function( elem, c ) { 33 | elem.classList.add( c ); 34 | }; 35 | removeClass = function( elem, c ) { 36 | elem.classList.remove( c ); 37 | }; 38 | } 39 | else { 40 | hasClass = function( elem, c ) { 41 | return classReg( c ).test( elem.className ); 42 | }; 43 | addClass = function( elem, c ) { 44 | if ( !hasClass( elem, c ) ) { 45 | elem.className = elem.className + ' ' + c; 46 | } 47 | }; 48 | removeClass = function( elem, c ) { 49 | elem.className = elem.className.replace( classReg( c ), ' ' ); 50 | }; 51 | } 52 | 53 | function toggleClass( elem, c ) { 54 | var fn = hasClass( elem, c ) ? removeClass : addClass; 55 | fn( elem, c ); 56 | } 57 | 58 | var classie = { 59 | // full names 60 | hasClass: hasClass, 61 | addClass: addClass, 62 | removeClass: removeClass, 63 | toggleClass: toggleClass, 64 | // short names 65 | has: hasClass, 66 | add: addClass, 67 | remove: removeClass, 68 | toggle: toggleClass 69 | }; 70 | 71 | // transport 72 | if ( typeof define === 'function' && define.amd ) { 73 | // AMD 74 | define( classie ); 75 | } else { 76 | // browser global 77 | window.classie = classie; 78 | } 79 | 80 | })( window ); 81 | -------------------------------------------------------------------------------- /_site/lessons/20190417_map/map_lesson_20190417.R: -------------------------------------------------------------------------------- 1 | 2 | # Load the tidyverse, which includes purrr 3 | library(tidyverse) 4 | 5 | 6 | # Basic list to show some simple examples 7 | practice_list <- list(a = 9, 8 | b = 16, 9 | c = 25) 10 | 11 | 12 | # Load in gene data 13 | treatment1 <- read.csv( 14 | "https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/gh-pages/lessons/20190417_map/genes_treatment1_vs_ctrl.csv") 15 | 16 | treatment2 <- read.csv( 17 | "https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/gh-pages/lessons/20190417_map/genes_treatment2_vs_ctrl.csv") 18 | 19 | # Put both data frames into a list 20 | treatment_list <- list(treat1 = treatment1, 21 | treat2 = treatment2) 22 | 23 | 24 | # Using map() to do string replacement in all columns of a data frame 25 | # Set up dummy data frame 26 | ex_df_1 <- tibble( 27 | colA = paste0("=", sample(50, size = 20)), 28 | colB = paste0(sample(letters, size = 20), "=", sample(50, size = 20)) 29 | ) 30 | 31 | ex_df_2 <- tibble( 32 | colA = paste0("=", sample(50, size = 20)), 33 | colB = paste0(sample(letters, size = 20), "=", sample(50, size = 20)) 34 | ) 35 | 36 | ex_df_list <- list(ex1 = ex_df_1, ex2 = ex_df_2) 37 | 38 | 39 | ### Start coding here! 40 | -------------------------------------------------------------------------------- /_site/lessons/Data_Structures/README.md: -------------------------------------------------------------------------------- 1 | 2 | 3 | Lesson of data structures 4 | 5 | 6 | by: Milos Milic 7 | 8 | Nov 7 2018 9 | -------------------------------------------------------------------------------- /_site/lessons/NSE/README.md: -------------------------------------------------------------------------------- 1 | # Non-standard Evaluation (NSE) 2 | NSE torial for UBC R Study Group 2018-06-28 3 | -------------------------------------------------------------------------------- /_site/lessons/computecanada/Amino_Acid_Select.R: -------------------------------------------------------------------------------- 1 | setwd("/home/path/to/working_directory") 2 | 3 | library(seqinr, lib.loc = "/home/path/to/package") 4 | 5 | nucleotides<- sample(1:4, 300, replace = TRUE) 6 | 7 | nucleotides<- gsub("1","A", nucleotides) 8 | nucleotides<- gsub("2","C", nucleotides) 9 | nucleotides<- gsub("3","G", nucleotides) 10 | nucleotides<- gsub("4","T", nucleotides) 11 | 12 | amino_acids<- translate(nucleotides) 13 | amino_acids<- paste(amino_acids, sep = "", collapse = "") 14 | 15 | writeLines(amino_acids, "amino_acids.txt", sep = "") 16 | -------------------------------------------------------------------------------- /_site/lessons/computecanada/Example_slurm.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | 3 | #SBATCH --job-name=aminoR 4 | #SBATCH -o aminoR.out 5 | #SBATCH -e aminoR.err 6 | #SBATCH --mail-user=anastasa@alumni.ubc.ca 7 | #SBATCH --mail-type=BEGIN,END,FAIL 8 | # 9 | #SBATCH --time=02:55:00 10 | #SBATCH --nodes=1 11 | #SBATCH --ntasks-per-node=1 12 | #SBATCH --cpus-per-task=32 13 | #SBATCH --mem 114000 14 | #SBATCH --account=groupname 15 | 16 | ## So here I've requested: 17 | ## Job Name: aminoR 18 | ## Process output redirect: aminoR.out (can be any file, doesn't have to be job name) 19 | ## Process error redirect: aminoR.err (can also specify a path, otherwise it puts these in current directory) 20 | ## Email this email -- 21 | ## When my program begins, ends and/or fails 22 | ## Maximum time: 2h 55mins (Staying within a scheduling bracket gives scheduling advantage 23 | ## (3hours, 12hours, 24hours, 72hours, 7days, etc.)) 24 | ## Number of nodes: 1 (one shared memory computer essentially) 25 | ## ntasks-per-node: 1 (for manual parallelization -- advanced) 26 | ## Number of CPUs per task: 32 27 | ## There is a scheduling bonus for using the entire node (all 32 CPUs) on Cedar/Graham 28 | ## Maximum memory usage: 114000MB (Essentially the whole node's memory (128GB for a "small node") 29 | ## Leave some grace room because the OS/scheduler takes some space.) 30 | ## Account argument is only necessary if you have more than one allocation. 31 | 32 | #You'll probably have to load a module or two: 33 | module load r/3.4.3 34 | 35 | #Now you can just run the program 36 | Rscript --vanilla Amino_Acid_Select.R 37 | 38 | ### Memory usage: should be estimated, and probably estimated high 39 | ### Time: This should be your best guess at the time it should take, plus some padding. 40 | ### If you can get it in a nice time zone for scheduling, great, but make sure it has time to finish. 41 | -------------------------------------------------------------------------------- /_site/lessons/computecanada/lessonplan.txt: -------------------------------------------------------------------------------- 1 | ## We will be learning how to access CC servers, load files there, use slurm scripts to run R code 2 | ## (or request nodes for quick interactive useage) and install packages locally. Also some of the 3 | ## "good practices" for computing clusters and how they can be helpful. 4 | -------------------------------------------------------------------------------- /_site/lessons/computecanada/seqinr_3.4-5.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/_site/lessons/computecanada/seqinr_3.4-5.tar.gz -------------------------------------------------------------------------------- /_site/lessons/dplyr/lesson.md: -------------------------------------------------------------------------------- 1 | # dplyr 2 | 3 | - **Authors**: [@ksamuk](https://github.com/ksamuk) 4 | - **Research field**: any 5 | - **Lesson Topic**: using R's dplyr & magrittr libraries 6 | 7 | Notes from this lesson are posted [here](https://github.com/ksamuk/dplyr_magrittr_demo) 8 | -------------------------------------------------------------------------------- /_site/lessons/ggplot2/lesson.md: -------------------------------------------------------------------------------- 1 | # ggplot2 2 | 3 | - **Authors**: [@kazi11](https://github.com/kazi11) 4 | - **Research field**: any 5 | - **Lesson Topic**: using R's ggplot2 plotting library 6 | 7 | Notes from this lesson are posted [here](https://gist.github.com/kazi11/22fac11fecd5dd5121b2) 8 | -------------------------------------------------------------------------------- /_site/lessons/intro-r-tidyverse/data/README.md: -------------------------------------------------------------------------------- 1 | # data directory 2 | -------------------------------------------------------------------------------- /_site/lessons/lab3/imgs/chunk_options.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/_site/lessons/lab3/imgs/chunk_options.jpeg 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-------------------------------------------------------------------------------- /_site/lessons/template/lesson.md: -------------------------------------------------------------------------------- 1 | #My Lesson Title 2 | 3 | - **Authors**: My Name 4 | - **Research field**: My field of study 5 | - **Lesson Topic**: What computing topics does this lesson cover? 6 | 7 | Write up your lesson here! If you're unsure of markdown, feel free to cut and paste your notes verbatim, and we'll help you format them. 8 | 9 | Be sure to include any data or examples you need in this same directory. 10 | 11 | If you'd like to share your lesson with the wider world, consider sending a pull request or opening an issue at Mozilla Science's collection of lessons: https://github.com/mozillascience/studyGroupLessons 12 | 13 | 14 | -------------------------------------------------------------------------------- /_site/lessons/tidyR/DataAnalysis.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/_site/lessons/tidyR/DataAnalysis.png -------------------------------------------------------------------------------- /_site/lessons/tidyR/README.md: -------------------------------------------------------------------------------- 1 | # tidyR_tutorial 2 | TidyR tutorial for UBC R Study Group 2018-07-05 3 | 4 | Based on [Amy Lee's 2017 tutorial](https://github.com/minisciencegirl/tidyR_tutorial), modified by Katharine Sedivy-Haley. -------------------------------------------------------------------------------- /_site/lessons/tidyR/The_Fellowship_Of_The_Ring.csv: -------------------------------------------------------------------------------- 1 | Film,Race,Female,Male 2 | The Fellowship Of The Ring,Elf,1229,971 3 | The Fellowship Of The Ring,Hobbit,14,3644 4 | The Fellowship Of The Ring,Man,0,1995 5 | -------------------------------------------------------------------------------- /_site/lessons/tidyR/The_Return_Of_The_King.csv: -------------------------------------------------------------------------------- 1 | Film,Race,Female,Male 2 | The Return Of The King,Elf,183,510 3 | The Return Of The King,Hobbit,2,2673 4 | The Return Of The King,Man,268,2459 5 | -------------------------------------------------------------------------------- /_site/lessons/tidyR/The_Two_Towers.csv: -------------------------------------------------------------------------------- 1 | Film,Race,Female,Male 2 | The Two Towers,Elf,331,513 3 | The Two Towers,Hobbit,0,2463 4 | The Two Towers,Man,401,3589 5 | -------------------------------------------------------------------------------- /_site/lessons/tidyR/example.csv: -------------------------------------------------------------------------------- 1 | Shared,CellType1,CellType2,Infection 2 | 24,31,13,Salmonella 3 | 38,79,44,Chlamydia 4 | -------------------------------------------------------------------------------- /_site/lessons/tidyR/lesson_files/figure-markdown_github/unnamed-chunk-10-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/_site/lessons/tidyR/lesson_files/figure-markdown_github/unnamed-chunk-10-1.png 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-------------------------------------------------------------------------------- 1 | Film,Race,Gender,Words 2 | The Fellowship Of The Ring,Elf,Female,1229 3 | The Fellowship Of The Ring,Hobbit,Female,14 4 | The Fellowship Of The Ring,Man,Female,0 5 | The Two Towers,Elf,Female,331 6 | The Two Towers,Hobbit,Female,0 7 | The Two Towers,Man,Female,401 8 | The Return Of The King,Elf,Female,183 9 | The Return Of The King,Hobbit,Female,2 10 | The Return Of The King,Man,Female,268 11 | The Fellowship Of The Ring,Elf,Male,971 12 | The Fellowship Of The Ring,Hobbit,Male,3644 13 | The Fellowship Of The Ring,Man,Male,1995 14 | The Two Towers,Elf,Male,513 15 | The Two Towers,Hobbit,Male,2463 16 | The Two Towers,Man,Male,3589 17 | The Return Of The King,Elf,Male,510 18 | The Return Of The King,Hobbit,Male,2673 19 | The Return Of The King,Man,Male,2459 20 | -------------------------------------------------------------------------------- /_site/lessons/tidyR/tidy_lotr.PNG: 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21 | -------------------------------------------------------------------------------- /js/agency.js: -------------------------------------------------------------------------------- 1 | /*! 2 | * Start Bootstrap - Agnecy Bootstrap Theme (http://startbootstrap.com) 3 | * Code licensed under the Apache License v2.0. 4 | * For details, see http://www.apache.org/licenses/LICENSE-2.0. 5 | */ 6 | 7 | // jQuery for page scrolling feature - requires jQuery Easing plugin 8 | $(function() { 9 | $('a.page-scroll').bind('click', function(event) { 10 | var $anchor = $(this); 11 | $('html, body').stop().animate({ 12 | scrollTop: $($anchor.attr('href')).offset().top 13 | }, 1500, 'easeInOutExpo'); 14 | event.preventDefault(); 15 | }); 16 | }); 17 | 18 | // Highlight the top nav as scrolling occurs 19 | $('body').scrollspy({ 20 | target: '.navbar-fixed-top' 21 | }) 22 | 23 | // Closes the Responsive Menu on Menu Item Click 24 | $('.navbar-collapse ul li a').click(function() { 25 | $('.navbar-toggle:visible').click(); 26 | }); 27 | 28 | $('div.modal').on('show.bs.modal', function() { 29 | var modal = this; 30 | var hash = modal.id; 31 | window.location.hash = hash; 32 | window.onhashchange = function() { 33 | if (!location.hash){ 34 | $(modal).modal('hide'); 35 | } 36 | } 37 | }); -------------------------------------------------------------------------------- /js/cbpAnimatedHeader.js: -------------------------------------------------------------------------------- 1 | /** 2 | * cbpAnimatedHeader.js v1.0.0 3 | * http://www.codrops.com 4 | * 5 | * Licensed under the MIT license. 6 | * http://www.opensource.org/licenses/mit-license.php 7 | * 8 | * Copyright 2013, Codrops 9 | * http://www.codrops.com 10 | */ 11 | var cbpAnimatedHeader = (function() { 12 | 13 | var docElem = document.documentElement, 14 | header = document.querySelector( '.navbar-fixed-top' ), 15 | didScroll = false, 16 | changeHeaderOn = 300; 17 | 18 | function init() { 19 | window.addEventListener( 'scroll', function( event ) { 20 | if( !didScroll ) { 21 | didScroll = true; 22 | setTimeout( scrollPage, 250 ); 23 | } 24 | }, false ); 25 | } 26 | 27 | function scrollPage() { 28 | var sy = scrollY(); 29 | if ( sy >= changeHeaderOn ) { 30 | classie.add( header, 'navbar-shrink' ); 31 | } 32 | else { 33 | classie.remove( header, 'navbar-shrink' ); 34 | } 35 | didScroll = false; 36 | } 37 | 38 | function scrollY() { 39 | return window.pageYOffset || docElem.scrollTop; 40 | } 41 | 42 | init(); 43 | 44 | })(); -------------------------------------------------------------------------------- /js/cbpAnimatedHeader.min.js: -------------------------------------------------------------------------------- 1 | /** 2 | * cbpAnimatedHeader.min.js v1.0.0 3 | * http://www.codrops.com 4 | * 5 | * Licensed under the MIT license. 6 | * http://www.opensource.org/licenses/mit-license.php 7 | * 8 | * Copyright 2013, Codrops 9 | * http://www.codrops.com 10 | */ 11 | var cbpAnimatedHeader=(function(){var b=document.documentElement,g=document.querySelector(".cbp-af-header"),e=false,a=300;function f(){window.addEventListener("scroll",function(h){if(!e){e=true;setTimeout(d,250)}},false)}function d(){var h=c();if(h>=a){classie.add(g,"cbp-af-header-shrink")}else{classie.remove(g,"cbp-af-header-shrink")}e=false}function c(){return window.pageYOffset||b.scrollTop}f()})(); -------------------------------------------------------------------------------- /js/classie.js: -------------------------------------------------------------------------------- 1 | /*! 2 | * classie - class helper functions 3 | * from bonzo https://github.com/ded/bonzo 4 | * 5 | * classie.has( elem, 'my-class' ) -> true/false 6 | * classie.add( elem, 'my-new-class' ) 7 | * classie.remove( elem, 'my-unwanted-class' ) 8 | * classie.toggle( elem, 'my-class' ) 9 | */ 10 | 11 | /*jshint browser: true, strict: true, undef: true */ 12 | /*global define: false */ 13 | 14 | ( function( window ) { 15 | 16 | 'use strict'; 17 | 18 | // class helper functions from bonzo https://github.com/ded/bonzo 19 | 20 | function classReg( className ) { 21 | return new RegExp("(^|\\s+)" + className + "(\\s+|$)"); 22 | } 23 | 24 | // classList support for class management 25 | // altho to be fair, the api sucks because it won't accept multiple classes at once 26 | var hasClass, addClass, removeClass; 27 | 28 | if ( 'classList' in document.documentElement ) { 29 | hasClass = function( elem, c ) { 30 | return elem.classList.contains( c ); 31 | }; 32 | addClass = function( elem, c ) { 33 | elem.classList.add( c ); 34 | }; 35 | removeClass = function( elem, c ) { 36 | elem.classList.remove( c ); 37 | }; 38 | } 39 | else { 40 | hasClass = function( elem, c ) { 41 | return classReg( c ).test( elem.className ); 42 | }; 43 | addClass = function( elem, c ) { 44 | if ( !hasClass( elem, c ) ) { 45 | elem.className = elem.className + ' ' + c; 46 | } 47 | }; 48 | removeClass = function( elem, c ) { 49 | elem.className = elem.className.replace( classReg( c ), ' ' ); 50 | }; 51 | } 52 | 53 | function toggleClass( elem, c ) { 54 | var fn = hasClass( elem, c ) ? removeClass : addClass; 55 | fn( elem, c ); 56 | } 57 | 58 | var classie = { 59 | // full names 60 | hasClass: hasClass, 61 | addClass: addClass, 62 | removeClass: removeClass, 63 | toggleClass: toggleClass, 64 | // short names 65 | has: hasClass, 66 | add: addClass, 67 | remove: removeClass, 68 | toggle: toggleClass 69 | }; 70 | 71 | // transport 72 | if ( typeof define === 'function' && define.amd ) { 73 | // AMD 74 | define( classie ); 75 | } else { 76 | // browser global 77 | window.classie = classie; 78 | } 79 | 80 | })( window ); 81 | -------------------------------------------------------------------------------- /lessons/20150521/lesson.md: -------------------------------------------------------------------------------- 1 | # dplyr 2 | 3 | - **Authors**: [@ksamuk](https://github.com/ksamuk) 4 | - **Research field**: any 5 | - **Lesson Topic**: using R's dplyr & magrittr libraries 6 | 7 | Notes from this lesson are posted [here](https://github.com/ksamuk/dplyr_magrittr_demo) 8 | -------------------------------------------------------------------------------- /lessons/20150528/loops.md: -------------------------------------------------------------------------------- 1 | # loops 2 | 3 | - **Authors**: [@rozdakin](https://github.com/rozdakin) 4 | - **Research field**: any 5 | - **Lesson Topic**: how to use loops in R 6 | 7 | Notes from this lesson are posted [here](https://github.com/rozdakin/R_loops_demo) 8 | -------------------------------------------------------------------------------- /lessons/20180614/data/README.md: -------------------------------------------------------------------------------- 1 | # data directory 2 | -------------------------------------------------------------------------------- /lessons/20180621/lesson.md: -------------------------------------------------------------------------------- 1 | # ggplot2 2 | 3 | - **Authors**: [@kazi11](https://github.com/kazi11) 4 | - **Research field**: any 5 | - **Lesson Topic**: using R's ggplot2 plotting library 6 | 7 | Notes from this lesson are posted [here](https://gist.github.com/kazi11/22fac11fecd5dd5121b2) 8 | -------------------------------------------------------------------------------- /lessons/20180628/README.md: -------------------------------------------------------------------------------- 1 | # Non-standard Evaluation (NSE) 2 | NSE torial for UBC R Study Group 2018-06-28 3 | -------------------------------------------------------------------------------- /lessons/20180705/DataAnalysis.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20180705/DataAnalysis.png -------------------------------------------------------------------------------- /lessons/20180705/README.md: -------------------------------------------------------------------------------- 1 | # tidyR_tutorial 2 | TidyR tutorial for UBC R Study Group 2018-07-05 3 | 4 | Based on [Amy Lee's 2017 tutorial](https://github.com/minisciencegirl/tidyR_tutorial), modified by Katharine Sedivy-Haley. -------------------------------------------------------------------------------- /lessons/20180705/The_Fellowship_Of_The_Ring.csv: -------------------------------------------------------------------------------- 1 | Film,Race,Female,Male 2 | The Fellowship Of The Ring,Elf,1229,971 3 | The Fellowship Of The Ring,Hobbit,14,3644 4 | The Fellowship Of The Ring,Man,0,1995 5 | -------------------------------------------------------------------------------- /lessons/20180705/The_Return_Of_The_King.csv: -------------------------------------------------------------------------------- 1 | Film,Race,Female,Male 2 | The Return Of The King,Elf,183,510 3 | The Return Of The King,Hobbit,2,2673 4 | The Return Of The King,Man,268,2459 5 | -------------------------------------------------------------------------------- /lessons/20180705/The_Two_Towers.csv: -------------------------------------------------------------------------------- 1 | Film,Race,Female,Male 2 | The Two Towers,Elf,331,513 3 | The Two Towers,Hobbit,0,2463 4 | The Two Towers,Man,401,3589 5 | -------------------------------------------------------------------------------- /lessons/20180705/example.csv: -------------------------------------------------------------------------------- 1 | Shared,CellType1,CellType2,Infection 2 | 24,31,13,Salmonella 3 | 38,79,44,Chlamydia 4 | -------------------------------------------------------------------------------- /lessons/20180705/lesson_files/figure-markdown_github/unnamed-chunk-10-1.png: -------------------------------------------------------------------------------- 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Towers,Man,Male,3589 17 | The Return Of The King,Elf,Male,510 18 | The Return Of The King,Hobbit,Male,2673 19 | The Return Of The King,Man,Male,2459 20 | -------------------------------------------------------------------------------- /lessons/20180705/tidy_lotr.PNG: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20180705/tidy_lotr.PNG -------------------------------------------------------------------------------- /lessons/20180705/untidy_lotr.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20180705/untidy_lotr.png -------------------------------------------------------------------------------- /lessons/20180809/Amino_Acid_Select.R: -------------------------------------------------------------------------------- 1 | setwd("/home/path/to/working_directory") 2 | 3 | library(seqinr, lib.loc = "/home/path/to/package") 4 | 5 | nucleotides<- sample(1:4, 300, replace = TRUE) 6 | 7 | nucleotides<- gsub("1","A", nucleotides) 8 | nucleotides<- gsub("2","C", nucleotides) 9 | nucleotides<- gsub("3","G", nucleotides) 10 | nucleotides<- gsub("4","T", nucleotides) 11 | 12 | amino_acids<- translate(nucleotides) 13 | amino_acids<- paste(amino_acids, sep = "", collapse = "") 14 | 15 | writeLines(amino_acids, "amino_acids.txt", sep = "") 16 | -------------------------------------------------------------------------------- /lessons/20180809/Example_slurm.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | 3 | #SBATCH --job-name=aminoR 4 | #SBATCH -o aminoR.out 5 | #SBATCH -e aminoR.err 6 | #SBATCH --mail-user=anastasa@alumni.ubc.ca 7 | #SBATCH --mail-type=BEGIN,END,FAIL 8 | # 9 | #SBATCH --time=02:55:00 10 | #SBATCH --nodes=1 11 | #SBATCH --ntasks-per-node=1 12 | #SBATCH --cpus-per-task=32 13 | #SBATCH --mem 114000 14 | #SBATCH --account=groupname 15 | 16 | ## So here I've requested: 17 | ## Job Name: aminoR 18 | ## Process output redirect: aminoR.out (can be any file, doesn't have to be job name) 19 | ## Process error redirect: aminoR.err (can also specify a path, otherwise it puts these in current directory) 20 | ## Email this email -- 21 | ## When my program begins, ends and/or fails 22 | ## Maximum time: 2h 55mins (Staying within a scheduling bracket gives scheduling advantage 23 | ## (3hours, 12hours, 24hours, 72hours, 7days, etc.)) 24 | ## Number of nodes: 1 (one shared memory computer essentially) 25 | ## ntasks-per-node: 1 (for manual parallelization -- advanced) 26 | ## Number of CPUs per task: 32 27 | ## There is a scheduling bonus for using the entire node (all 32 CPUs) on Cedar/Graham 28 | ## Maximum memory usage: 114000MB (Essentially the whole node's memory (128GB for a "small node") 29 | ## Leave some grace room because the OS/scheduler takes some space.) 30 | ## Account argument is only necessary if you have more than one allocation. 31 | 32 | #You'll probably have to load a module or two: 33 | module load r/3.4.3 34 | 35 | #Now you can just run the program 36 | Rscript --vanilla Amino_Acid_Select.R 37 | 38 | ### Memory usage: should be estimated, and probably estimated high 39 | ### Time: This should be your best guess at the time it should take, plus some padding. 40 | ### If you can get it in a nice time zone for scheduling, great, but make sure it has time to finish. 41 | -------------------------------------------------------------------------------- /lessons/20180809/lessonplan.txt: -------------------------------------------------------------------------------- 1 | ## We will be learning how to access CC servers, load files there, use slurm scripts to run R code 2 | ## (or request nodes for quick interactive useage) and install packages locally. Also some of the 3 | ## "good practices" for computing clusters and how they can be helpful. 4 | -------------------------------------------------------------------------------- /lessons/20180809/seqinr_3.4-5.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20180809/seqinr_3.4-5.tar.gz -------------------------------------------------------------------------------- /lessons/20181108/README.md: -------------------------------------------------------------------------------- 1 | 2 | 3 | Lesson of data structures 4 | 5 | 6 | by: Milos Milic 7 | 8 | Nov 7 2018 9 | -------------------------------------------------------------------------------- /lessons/20181129/imgs/chunk_options.jpeg: -------------------------------------------------------------------------------- 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14 | "https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/gh-pages/lessons/20190417_map/genes_treatment1_vs_ctrl.csv") 15 | 16 | treatment2 <- read.csv( 17 | "https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/gh-pages/lessons/20190417_map/genes_treatment2_vs_ctrl.csv") 18 | 19 | # Put both data frames into a list 20 | treatment_list <- list(treat1 = treatment1, 21 | treat2 = treatment2) 22 | 23 | 24 | # Using map() to do string replacement in all columns of a data frame 25 | # Set up dummy data frame 26 | ex_df_1 <- tibble( 27 | colA = paste0("=", sample(50, size = 20)), 28 | colB = paste0(sample(letters, size = 20), "=", sample(50, size = 20)) 29 | ) 30 | 31 | ex_df_2 <- tibble( 32 | colA = paste0("=", sample(50, size = 20)), 33 | colB = paste0(sample(letters, size = 20), "=", sample(50, size = 20)) 34 | ) 35 | 36 | ex_df_list <- list(ex1 = ex_df_1, ex2 = ex_df_2) 37 | 38 | 39 | ### Start coding here! 40 | -------------------------------------------------------------------------------- /lessons/20191113/IterationInR_lesson.R: -------------------------------------------------------------------------------- 1 | 2 | # Load the tidyverse, which includes purrr 3 | #install.packages("tidyverse") 4 | library(tidyverse) 5 | 6 | 7 | # Basic list to show some simple examples 8 | practice_list <- list(a = 9, 9 | b = 16, 10 | c = 25) 11 | 12 | 13 | # Load in gene data 14 | treatment1 <- read.csv(paste0( 15 | "https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/gh-pages/", 16 | "lessons/20191113_IterationInR/genes_treatment1_vs_ctrl.csv" 17 | )) 18 | 19 | treatment2 <- read.csv(paste0( 20 | "https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/gh-pages/", 21 | "lessons/20191113_IterationInR/genes_treatment2_vs_ctrl.csv" 22 | )) 23 | 24 | # Set up dummy data frames 25 | ex_df_1 <- tibble( 26 | colA = paste0("=", sample(50, size = 20)), 27 | colB = paste0(sample(letters, size = 20), "=", sample(50, size = 20)) 28 | ) 29 | 30 | ex_df_2 <- tibble( 31 | colA = paste0("=", sample(50, size = 20)), 32 | colB = paste0(sample(letters, size = 20), "=", sample(50, size = 20)) 33 | ) 34 | 35 | 36 | ### Start coding here! 37 | -------------------------------------------------------------------------------- /lessons/20200122/intro_rmd_fromSession.Rmd: -------------------------------------------------------------------------------- 1 | --- 2 | title: "RMarkdown Introduction" 3 | author: "Travis Blimkie" 4 | date: "22/01/2020" 5 | output: 6 | html_document: 7 | theme: flatly 8 | highlight: kate 9 | toc: yes 10 | --- 11 | 12 | ```{r setup, include=FALSE} 13 | knitr::opts_chunk$set(echo = TRUE) 14 | ``` 15 | 16 | # Overview 17 | ## R Markdown 18 | 19 | This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see . 20 | 21 | When you click the **Knit** *button* a document will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this: 22 | 23 | ```{r cars} 24 | summary(cars) 25 | ``` 26 | 27 | ## Including Plots 28 | 29 | You can also embed plots, for example: 30 | 31 | ```{r pressure, echo=FALSE} 32 | plot(pressure) 33 | ``` 34 | 35 | Note that the `echo = FALSE` parameter was added to the code chunk to prevent printing of the R code that generated the plot. 36 | 37 | 38 | 39 | 40 | ## Adding code chunk 41 | 42 | ```{r} 43 | library(tidyverse) 44 | library(knitr) 45 | 46 | data("mtcars") 47 | 48 | dim(mtcars) 49 | 50 | glimpse(mtcars) 51 | ``` 52 | 53 | 54 | ## Holding results 55 | ```{r, results = "hold"} 56 | ``` 57 | 58 | 59 | ```{r, results = "hold"} 60 | data("mtcars") 61 | 62 | dim(mtcars) 63 | 64 | glimpse(mtcars) 65 | ``` 66 | 67 | 68 | ## Making a nice table 69 | ```{r} 70 | mtcars %>% 71 | filter(mpg > 20) %>% 72 | rownames_to_column("car") %>% 73 | kable() 74 | ``` 75 | 76 | 77 | # Making a plot 78 | 79 | ```{r, fig.align = "center", fig.height = 3, fig.width = 4} 80 | ggplot(mtcars, aes(cyl, mpg)) + 81 | geom_col() + 82 | scale_x_continuous(breaks = c(4, 6, 8)) + 83 | labs(x = "No. Cylinders", y = "Miles per Gallon") + 84 | theme_classic() 85 | ``` 86 | 87 |
88 | 89 |
90 | 91 |
92 | 93 |
94 | 95 | ## Insert links and images 96 | 97 | to insert a link: 98 | 99 | [UBC R Study Group](https://github.com/UBC-R-Study-group/studyGroup) 100 | 101 | ![Homepage](Screenshot from 2020-01-22 13-47-10.png) 102 | 103 |
104 | 105 | 106 | 107 | -------------------------------------------------------------------------------- /lessons/20200212/wellKeptWednesday.R: -------------------------------------------------------------------------------- 1 | 2 | # Load the tidyverse 3 | library(tidyverse) 4 | 5 | # Loading the data from github 6 | nyc_squirrels <- readr::read_csv("https://raw.githubusercontent.com/rfordatascience/tidytuesday/master/data/2019/2019-10-29/nyc_squirrels.csv") 7 | 8 | # Take a quick glimpse! 9 | glimpse(nyc_squirrels) 10 | 11 | # Get a quick summary of the data 12 | summary(nyc_squirrels) 13 | 14 | # Check number of unique entries 15 | length(unique(nyc_squirrels$unique_squirrel_id)) 16 | 17 | # Check the colors of the squirrels 18 | ggplot(nyc_squirrels, aes(primary_fur_color, fill = primary_fur_color)) + 19 | geom_histogram(stat = "count") 20 | 21 | 22 | ggplot(nyc_squirrels, aes(primary_fur_color, fill = primary_fur_color)) + 23 | geom_histogram(stat = "count") + 24 | theme_light() 25 | 26 | 27 | # To examine activities by time of day (AM/PM), first use pivot_longer() to 28 | # get the data into a more "tidy" format. The `cols` specified are merged into 29 | # a single column, "activity", with their values going into "TF" 30 | squirrels2 <- nyc_squirrels %>% 31 | pivot_longer(., cols = c(running, chasing, climbing, eating, foraging), 32 | names_to = "activity", values_to = "TF") %>% 33 | filter(TF == TRUE) 34 | 35 | # Now we can plot 36 | ggplot(squirrels2, aes(shift, fill = activity)) + 37 | geom_histogram(stat = "count") + 38 | theme_classic(base_size = 12) + 39 | labs(x = "Shift", y = "Count", fill = "Activity", 40 | title = "Squirrel Activity by Time of Day") + 41 | scale_fill_brewer(type = "qual", palette = 5) 42 | 43 | # Check out the different color palettes available 44 | RColorBrewer::display.brewer.all() 45 | -------------------------------------------------------------------------------- /lessons/20200226/data/2019Sep26_algae_alaska.xlsx: -------------------------------------------------------------------------------- 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volume of 32 | # a rectangular prism 33 | 34 | vol_rect <- function(height, width, depth) { 35 | vol <- height * width * depth 36 | return(vol) 37 | } 38 | vol_rect(2, 3, 4) 39 | 40 | 41 | # Example of print debugging 42 | debug_ex <- function(height, base) { 43 | print(height) 44 | height * base / 2 45 | } 46 | 47 | debug_ex(4, 5) 48 | 49 | 50 | # Example of tidy evaluation 51 | data("mtcars") 52 | mtcars 53 | 54 | 55 | # Normal ggplot2 call: 56 | ggplot(mtcars, aes(cyl, mpg)) + 57 | geom_point() 58 | 59 | multi_graph <- function(cx, cy) { 60 | ggplot(mtcars, aes(cx, cy)) + 61 | geom_point() 62 | } 63 | 64 | multi_graph(disp, mpg) 65 | 66 | 67 | # Fixing our tidyeval problem 68 | multi_graph_2 <- function(cx, cy) { 69 | ggplot(mtcars, aes({{cx}}, {{cy}})) + 70 | geom_point() 71 | } 72 | 73 | multi_graph_2(disp, mpg) 74 | 75 | 76 | # Challenge 2 77 | # Create a function that: 78 | # Will plot a graph of any column in the mtcars dataset 79 | # Saves the box plot under any name given (hint: use ggsave()) 80 | 81 | my_plot_function1 <- function(col1, col2, filename) { 82 | ggplot(mtcars, aes({{col1}}, {{col2}}, group = {{col1}})) + 83 | geom_boxplot() 84 | ggsave(filename) 85 | } 86 | 87 | my_plot_function1(carb, mpg, "plot1.png") 88 | 89 | 90 | my_plot_function2 <- function(col1, col2, filename) { 91 | theplot <- ggplot(mtcars, aes({{col1}}, {{col2}}, group = {{col1}})) + 92 | geom_boxplot() 93 | return(theplot) 94 | ggsave(plot = theplot, filename) 95 | } 96 | 97 | my_plot_function2(carb, mpg, "mtcars_carb_mpg.png") 98 | -------------------------------------------------------------------------------- /lessons/20210210/new_plot.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20210210/new_plot.jpg -------------------------------------------------------------------------------- /lessons/20210224/ShinyDemoApp/app.R: -------------------------------------------------------------------------------- 1 | ### Lesson is based on Dean Attali's Shiny Tutorial: https://deanattali.com/blog/building-shiny-apps-tutorial/ 2 | 3 | #install.packages("shiny") 4 | #install.packages("dplyr") 5 | #install.packages("ggplot2") 6 | 7 | library(shiny) 8 | library(ggplot2) 9 | library(dplyr) 10 | 11 | filename <- file.path("data", "bcl-data.csv") 12 | bcl <- read.csv(filename, stringsAsFactors = FALSE) 13 | 14 | if (file.exists(filename)) { 15 | bcl <- read.csv(filename, stringsAsFactors = FALSE) 16 | } else { 17 | warning("File not found") 18 | } 19 | 20 | ui <- fluidPage( 21 | titlePanel("BC Liquor Store prices"), 22 | sidebarLayout( 23 | sidebarPanel( 24 | sliderInput("priceInput", "Price", 0, 100, c(25, 40), pre = "$"), 25 | radioButtons("typeInput", "Product type", 26 | choices = c("BEER", "REFRESHMENT", "SPIRITS", "WINE"), 27 | selected = "WINE"), 28 | selectInput("countryInput", "Country", 29 | choices = c("CANADA", "FRANCE", "ITALY")) 30 | ), 31 | mainPanel( 32 | plotOutput("coolplot"), 33 | br(), br(), 34 | tableOutput("results") 35 | ) 36 | ) 37 | ) 38 | 39 | server <- function(input, output) { 40 | output$coolplot <- renderPlot({ 41 | filtered <- 42 | bcl %>% 43 | filter(Price >= input$priceInput[1], 44 | Price <= input$priceInput[2], 45 | Type == input$typeInput, 46 | Country == input$countryInput 47 | ) 48 | ggplot(filtered, aes(Alcohol_Content)) + 49 | geom_histogram() 50 | }) 51 | } 52 | 53 | shinyApp(ui = ui, server = server) -------------------------------------------------------------------------------- /lessons/20210224/ShinyDemoApp/data/shiny-runapp.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20210224/ShinyDemoApp/data/shiny-runapp.png -------------------------------------------------------------------------------- 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knitr::opts_chunk$set( 2 | include = TRUE, 3 | warning = FALSE, 4 | message = FALSE, 5 | comment = "" 6 | ) 7 | library(tidyverse) 8 | usethis::create_package("/Users/owner/Documents/UBC/Projects/studyGroup/lessons/20210324/samplePackage") 9 | usethis::create_package("/Users/owner/Documents/UBC/Projects/studyGroup/lessons/20210324/samplePackage") 10 | -------------------------------------------------------------------------------- /lessons/20210324/package_state.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20210324/package_state.png -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/.Rbuildignore: -------------------------------------------------------------------------------- 1 | ^samplePackage\.Rproj$ 2 | ^\.Rproj\.user$ 3 | ^LICENSE\.md$ 4 | ^README\.Rmd$ 5 | ^CODE_OF_CONDUCT\.md$ 6 | ^doc$ 7 | ^Meta$ 8 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/.Rhistory: -------------------------------------------------------------------------------- 1 | devtools::build_vignettes() 2 | usethis::use_vignette("my-vignette") 3 | devtools::build_vignettes() 4 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/.gitignore: -------------------------------------------------------------------------------- 1 | .Rproj.user 2 | inst/doc 3 | doc 4 | Meta 5 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/DESCRIPTION: -------------------------------------------------------------------------------- 1 | Package: samplePackage 2 | Title: What the Package Does (One Line, Title Case) 3 | Version: 0.0.0.9000 4 | Authors@R: 5 | person(given = "First", 6 | family = "Last", 7 | role = c("aut", "cre"), 8 | email = "first.last@example.com", 9 | comment = c(ORCID = "YOUR-ORCID-ID")) 10 | Description: What the package does (one paragraph). 11 | License: MIT + file LICENSE 12 | Encoding: UTF-8 13 | LazyData: true 14 | Roxygen: list(markdown = TRUE) 15 | RoxygenNote: 7.1.1 16 | Suggests: 17 | knitr, 18 | rmarkdown, 19 | testthat (>= 3.0.0) 20 | Config/testthat/edition: 3 21 | Imports: 22 | purrr 23 | VignetteBuilder: knitr 24 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/LICENSE: -------------------------------------------------------------------------------- 1 | YEAR: 2021 2 | COPYRIGHT HOLDER: Jeremy Fan 3 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/LICENSE.md: -------------------------------------------------------------------------------- 1 | # MIT License 2 | 3 | Copyright (c) 2021 Jeremy Fan 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. 22 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/NAMESPACE: -------------------------------------------------------------------------------- 1 | # Generated by roxygen2: do not edit by hand 2 | 3 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/R/sample_class.R: -------------------------------------------------------------------------------- 1 | tri_area <- function(height, base) { 2 | height * base / 2 3 | } 4 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/README.Rmd: -------------------------------------------------------------------------------- 1 | --- 2 | output: github_document 3 | --- 4 | 5 | 6 | 7 | ```{r, include = FALSE} 8 | knitr::opts_chunk$set( 9 | collapse = TRUE, 10 | comment = "#>", 11 | fig.path = "man/figures/README-", 12 | out.width = "100%" 13 | ) 14 | ``` 15 | 16 | # samplePackage 17 | 18 | 19 | 20 | 21 | The goal of samplePackage is to ... 22 | 23 | ## Installation 24 | 25 | You can install the released version of samplePackage from [CRAN](https://CRAN.R-project.org) with: 26 | 27 | ``` r 28 | install.packages("samplePackage") 29 | ``` 30 | 31 | And the development version from [GitHub](https://github.com/) with: 32 | 33 | ``` r 34 | # install.packages("devtools") 35 | devtools::install_github("UBC-R-Study-group/studyGroup") 36 | ``` 37 | ## Example 38 | 39 | This is a basic example which shows you how to solve a common problem: 40 | 41 | ```{r example} 42 | library(samplePackage) 43 | ## basic example code 44 | ``` 45 | 46 | What is special about using `README.Rmd` instead of just `README.md`? You can include R chunks like so: 47 | 48 | ```{r cars} 49 | summary(cars) 50 | ``` 51 | 52 | You'll still need to render `README.Rmd` regularly, to keep `README.md` up-to-date. `devtools::build_readme()` is handy for this. You could also use GitHub Actions to re-render `README.Rmd` every time you push. An example workflow can be found here: . 53 | 54 | You can also embed plots, for example: 55 | 56 | ```{r pressure, echo = FALSE} 57 | plot(pressure) 58 | ``` 59 | 60 | In that case, don't forget to commit and push the resulting figure files, so they display on GitHub and CRAN. 61 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/README.md: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | # samplePackage 5 | 6 | 7 | 8 | 9 | 10 | The goal of samplePackage is to … 11 | 12 | ## Installation 13 | 14 | You can install the released version of samplePackage from 15 | [CRAN](https://CRAN.R-project.org) with: 16 | 17 | ``` r 18 | install.packages("samplePackage") 19 | ``` 20 | 21 | And the development version from [GitHub](https://github.com/) with: 22 | 23 | ``` r 24 | # install.packages("devtools") 25 | devtools::install_github("UBC-R-Study-group/studyGroup") 26 | ``` 27 | 28 | ## Example 29 | 30 | This is a basic example which shows you how to solve a common problem: 31 | 32 | ``` r 33 | library(samplePackage) 34 | ## basic example code 35 | ``` 36 | 37 | What is special about using `README.Rmd` instead of just `README.md`? 38 | You can include R chunks like so: 39 | 40 | ``` r 41 | summary(cars) 42 | #> speed dist 43 | #> Min. : 4.0 Min. : 2.00 44 | #> 1st Qu.:12.0 1st Qu.: 26.00 45 | #> Median :15.0 Median : 36.00 46 | #> Mean :15.4 Mean : 42.98 47 | #> 3rd Qu.:19.0 3rd Qu.: 56.00 48 | #> Max. :25.0 Max. :120.00 49 | ``` 50 | 51 | You’ll still need to render `README.Rmd` regularly, to keep `README.md` 52 | up-to-date. `devtools::build_readme()` is handy for this. You could also 53 | use GitHub Actions to re-render `README.Rmd` every time you push. An 54 | example workflow can be found here: 55 | . 56 | 57 | You can also embed plots, for example: 58 | 59 | 60 | 61 | In that case, don’t forget to commit and push the resulting figure 62 | files, so they display on GitHub and CRAN. 63 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/man/figures/README-pressure-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20210324/samplePackage/man/figures/README-pressure-1.png -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/samplePackage.Rproj: -------------------------------------------------------------------------------- 1 | Version: 1.0 2 | 3 | RestoreWorkspace: No 4 | SaveWorkspace: No 5 | AlwaysSaveHistory: Default 6 | 7 | EnableCodeIndexing: Yes 8 | UseSpacesForTab: Yes 9 | NumSpacesForTab: 2 10 | Encoding: UTF-8 11 | 12 | RnwWeave: Sweave 13 | LaTeX: pdfLaTeX 14 | 15 | AutoAppendNewline: Yes 16 | StripTrailingWhitespace: Yes 17 | LineEndingConversion: Posix 18 | 19 | BuildType: Package 20 | PackageUseDevtools: Yes 21 | PackageInstallArgs: --no-multiarch --with-keep.source 22 | PackageRoxygenize: rd,collate,namespace 23 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/tests/testthat.R: -------------------------------------------------------------------------------- 1 | library(testthat) 2 | library(samplePackage) 3 | 4 | test_check("samplePackage") 5 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/tests/testthat/test-sample_class.R: -------------------------------------------------------------------------------- 1 | test_that("multiplication works", { 2 | expect_equal(tri_area(10,2), 10) 3 | }) 4 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/vignettes/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | *.R 3 | -------------------------------------------------------------------------------- /lessons/20210324/samplePackage/vignettes/my-vignette.Rmd: -------------------------------------------------------------------------------- 1 | --- 2 | title: "my-vignette" 3 | output: rmarkdown::html_vignette 4 | vignette: > 5 | %\VignetteIndexEntry{my-vignette} 6 | %\VignetteEngine{knitr::rmarkdown} 7 | %\VignetteEncoding{UTF-8} 8 | --- 9 | 10 | ```{r, include = FALSE} 11 | knitr::opts_chunk$set( 12 | collapse = TRUE, 13 | comment = "#>" 14 | ) 15 | ``` 16 | 17 | ```{r setup} 18 | library(samplePackage) 19 | ``` 20 | -------------------------------------------------------------------------------- /lessons/20210331/README.md: -------------------------------------------------------------------------------- 1 | # tidyR_tutorial 2 | TidyR tutorial for UBC R Study Group on March 31st, 2021. 3 | 4 | Based on [Amy Lee's 2017 tutorial](https://github.com/minisciencegirl/tidyR_tutorial), 5 | modified by Katharine Sedivy-Haley & Travis Blimkie. 6 | -------------------------------------------------------------------------------- /lessons/20210331/data/EDAWR_cases.csv: -------------------------------------------------------------------------------- 1 | country,2011,2012,2013 2 | FR,7000,6900,7000 3 | DE,5800,6000,6200 4 | US,15000,14000,13000 5 | -------------------------------------------------------------------------------- /lessons/20210331/data/EDAWR_storms.csv: -------------------------------------------------------------------------------- 1 | storm,wind,pressure,date 2 | Alberto,110,1007,2000-08-03 3 | Alex,45,1009,1998-07-27 4 | Allison,65,1005,1995-06-03 5 | Ana,40,1013,1997-06-30 6 | Arlene,50,1010,1999-06-11 7 | Arthur,45,1010,1996-06-17 8 | -------------------------------------------------------------------------------- /lessons/20210331/data/The_Fellowship_Of_The_Ring.csv: -------------------------------------------------------------------------------- 1 | Film,Race,Female,Male 2 | The Fellowship Of The Ring,Elf,1229,971 3 | The Fellowship Of The Ring,Hobbit,14,3644 4 | The Fellowship Of The Ring,Man,0,1995 5 | -------------------------------------------------------------------------------- /lessons/20210331/data/The_Return_Of_The_King.csv: -------------------------------------------------------------------------------- 1 | Film,Race,Female,Male 2 | The Return Of The King,Elf,183,510 3 | The Return Of The King,Hobbit,2,2673 4 | The Return Of The King,Man,268,2459 5 | -------------------------------------------------------------------------------- /lessons/20210331/data/The_Two_Towers.csv: -------------------------------------------------------------------------------- 1 | Film,Race,Female,Male 2 | The Two Towers,Elf,331,513 3 | The Two Towers,Hobbit,0,2463 4 | The Two Towers,Man,401,3589 5 | -------------------------------------------------------------------------------- /lessons/20210331/data/lotr_tidy.csv: -------------------------------------------------------------------------------- 1 | Film,Race,Sex,Words 2 | The Fellowship Of The Ring,Elf,Female,1229 3 | The Fellowship Of The Ring,Hobbit,Female,14 4 | The Fellowship Of The Ring,Man,Female,0 5 | The Two Towers,Elf,Female,331 6 | The Two Towers,Hobbit,Female,0 7 | The Two Towers,Man,Female,401 8 | The Return Of The King,Elf,Female,183 9 | The Return Of The King,Hobbit,Female,2 10 | The Return Of The King,Man,Female,268 11 | The Fellowship Of The Ring,Elf,Male,971 12 | The Fellowship Of The Ring,Hobbit,Male,3644 13 | The Fellowship Of The Ring,Man,Male,1995 14 | The Two Towers,Elf,Male,513 15 | The Two Towers,Hobbit,Male,2463 16 | The Two Towers,Man,Male,3589 17 | The Return Of The King,Elf,Male,510 18 | The Return Of The King,Hobbit,Male,2673 19 | The Return Of The King,Man,Male,2459 20 | -------------------------------------------------------------------------------- /lessons/20210331/www/DataAnalysis.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20210331/www/DataAnalysis.png -------------------------------------------------------------------------------- /lessons/20210331/www/tidy_lotr.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20210331/www/tidy_lotr.png -------------------------------------------------------------------------------- /lessons/20210331/www/untidy_lotr.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UBC-R-Study-group/studyGroup/37d7c51b7bff3315ea02273492db969bd09348f1/lessons/20210331/www/untidy_lotr.png -------------------------------------------------------------------------------- /lessons/template/lesson.md: -------------------------------------------------------------------------------- 1 | # My Lesson Title 2 | 3 | - **Authors**: My Name 4 | - **Research field**: My field of study 5 | - **Lesson Topic**: What computing topics does this lesson cover? 6 | 7 | Write up your lesson here! If you're unsure of markdown, feel free to cut and paste your notes verbatim, and we'll help you format them. 8 | 9 | Be sure to include any data or examples you need in this same directory. 10 | 11 | If you'd like to share your lesson with the wider world, consider sending a pull request or opening an issue at Mozilla Science's collection of lessons: https://github.com/mozillascience/studyGroupLessons 12 | -------------------------------------------------------------------------------- /mail/contact_me.php: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /studyGroup.Rproj: -------------------------------------------------------------------------------- 1 | Version: 1.0 2 | 3 | RestoreWorkspace: Default 4 | SaveWorkspace: Default 5 | AlwaysSaveHistory: Default 6 | 7 | EnableCodeIndexing: Yes 8 | UseSpacesForTab: Yes 9 | NumSpacesForTab: 2 10 | Encoding: UTF-8 11 | 12 | RnwWeave: Sweave 13 | LaTeX: pdfLaTeX 14 | -------------------------------------------------------------------------------- /style.css: -------------------------------------------------------------------------------- 1 | --- 2 | layout: style 3 | --- --------------------------------------------------------------------------------