├── .gitignore ├── INSTALL.md ├── Pretrain ├── jsons │ ├── __init__.py │ ├── dataset00_BTCV.json │ ├── dataset01_BrainTumour.json │ ├── dataset02_Heart.json │ ├── dataset03_Liver.json │ ├── dataset04_Hippocampus.json │ ├── dataset05_Prostate.json │ ├── dataset06_Lung.json │ ├── dataset07_Pancreas.json │ ├── dataset08_HepaticVessel.json │ ├── dataset09_Spleen.json │ ├── dataset10_Colon.json │ ├── dataset11_TCIAcovid19.json │ ├── dataset12_WORD.json │ ├── dataset13_AbdomenCT-1K.json │ ├── dataset_HNSCC.json │ ├── dataset_LIDC.json │ ├── dataset_LUNA16.json │ └── dataset_TCIAcolon.json ├── losses │ └── loss.py ├── main.py ├── models │ └── ssl_head.py ├── optimizers │ ├── __init__.py │ └── lr_scheduler.py ├── run.sh └── utils │ ├── __init__.py │ ├── data_utils.py │ ├── dataset_in_memory.py │ ├── ops.py │ ├── view_ops.py │ └── view_transforms.py ├── README.md ├── TRAINING.md ├── WORD ├── README.md ├── dataset │ ├── __init__.py │ ├── dataset12_WORD_0.1.json │ ├── dataset12_WORD_0.3.json │ ├── dataset12_WORD_0.5.json │ ├── dataset12_WORD_0.7.json │ └── dataset12_WORD_0.9.json ├── inferers.py ├── main.py ├── models │ ├── __init__.py │ ├── cross_attention.py │ └── swin_unetr.py ├── optimizers │ ├── __init__.py │ └── lr_scheduler.py ├── outputs │ └── __init__.py ├── pretrained_models │ └── __init__.py ├── requirements.txt ├── run.sh ├── runs │ └── __init__.py ├── test.py ├── test_parallel.py ├── trainer.py └── utils │ ├── __init__.py │ ├── data_utils.py │ ├── dataset_in_memory.py │ ├── misc.py │ ├── test_view_transforms.py │ ├── view_ops.py │ └── view_transforms.py ├── figures ├── ACDC.png ├── Result.png ├── SwinMMArch.png ├── finetune.png └── pretrain.png ├── requirements.txt └── scripts ├── setup_env.sh └── start_redis.sh /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/UCSC-VLAA/SwinMM/HEAD/.gitignore -------------------------------------------------------------------------------- /INSTALL.md: 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