├── .Rbuildignore ├── .devcontainer ├── .vscode │ └── settings.json ├── Containerfile └── devcontainer.json ├── .gitattributes ├── .github ├── copilot-instructions.md └── workflows │ ├── pkgdown.yml │ └── r.yml ├── .gitignore ├── ChangeLog ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── Makefile ├── NAMESPACE ├── NEWS.md ├── R ├── RcppExports.R ├── adjmat.r ├── bass.r ├── bootnet.r ├── citer_environment.R ├── data.r ├── degree_adoption_diagnostic.R ├── diffnet-c.R ├── diffnet-class.r ├── diffnet-indexing.r ├── diffnet-methods.r ├── egonets.R ├── formula.r ├── graph_data.r ├── igraph.r ├── imports.r ├── infect_suscept.r ├── mentor.r ├── misc.r ├── moran.r ├── netmatch.r ├── network.r ├── options.R ├── package-doc.r ├── plot_diffnet2.r ├── random_graph.R ├── rdiffnet.r ├── read_write_foreign.r ├── rewire.r ├── select_egoalter.R ├── spatial.R ├── stats.R ├── struct_equiv.R ├── struct_test.R └── survey_to_diffnet.R ├── README.md ├── README.qmd ├── _pkgdown.yml ├── cleanup ├── configure ├── configure.ac ├── cran-comments.md ├── data-raw ├── SAMPSON.DAT ├── SAMPSON.DAT.R ├── SAMPSON.NET ├── SAMPSON.R ├── SAMPSONL.NET ├── SAMPSONL.R ├── brfarmers.R ├── brfarmersDiffNet.R ├── data_creationfiles.R ├── fakeDynEdgelist.R ├── fakeEdgelist.R ├── fakesurvey.R ├── fakesurvey.csv ├── fakesurveyDyn.R ├── kfamily.R ├── kfamilyDiffNet.R ├── listing_duplicated_columns.r └── medInnovations.R ├── data ├── brfarmers.rdata ├── brfarmersDiffNet.rdata ├── fakeDynEdgelist.rdata ├── fakeEdgelist.rdata ├── fakesurvey.rdata ├── fakesurveyDyn.rdata ├── kfamily.rdata ├── kfamilyDiffNet.rdata ├── medInnovations.rdata └── medInnovationsDiffNet.rdata ├── docker ├── DESCRIPTION ├── Dockerfile ├── Dockerfile.r-ver ├── Makefile ├── README.md └── pkgs.R ├── inst ├── CITATION └── extdata │ ├── SAMPSON.DAT │ ├── SAMPSON.NET │ ├── SAMPSONL.NET │ └── SAMPSON_W_DEGREE.vec ├── man-roxygen ├── graph_template.R └── plotting_template.R ├── man ├── approx_geodesic.Rd ├── as.array.diffnet.Rd ├── as_dgCMatrix.Rd ├── bass.Rd ├── bootnet.Rd ├── brfarmers.Rd ├── brfarmersDiffNet.Rd ├── c.diffnet.Rd ├── classify_adopters.Rd ├── classify_graph.Rd ├── cumulative_adopt_count.Rd ├── degree_adoption_diagnostic.Rd ├── dgr.Rd ├── diag_expand.Rd ├── diffnet-arithmetic.Rd ├── diffnet-class.Rd ├── diffnet_check_attr_class.Rd ├── diffnet_index.Rd ├── diffnetmatmult.Rd ├── diffreg.Rd ├── diffusion-data.Rd ├── diffusionMap.Rd ├── drawColorKey.Rd ├── edgelist_to_adjmat.Rd ├── edges_coords.Rd ├── ego_variance.Rd ├── egonet_attrs.Rd ├── exposure.Rd ├── fakeDynEdgelist.Rd ├── fakeEdgelist.Rd ├── fakesurvey.Rd ├── fakesurveyDyn.Rd ├── figures │ ├── README-Adopters-1.png │ ├── README-BoringThreshold-1.png │ ├── README-Hazard-1.png │ ├── README-NiceThreshold-1.png │ ├── README-mosaic-1.png │ ├── README-plot_diffnet-1.png │ ├── README-plot_diffnet2-1.png │ ├── README-plot_diffnet2-withmap-1.png │ ├── README-plot_infectsuscept-1.png │ ├── README-plot_infectsuscept-2.png │ ├── netdiffuser-logo.png │ └── netdiffuser-logo.svg ├── grid_distribution.Rd ├── hazard_rate.Rd ├── igraph.Rd ├── infection.Rd ├── isolated.Rd ├── kfamily.Rd ├── kfamilyDiffNet.Rd ├── matrix_compare.Rd ├── medInnovations.Rd ├── medInnovationsDiffNet.Rd ├── mentor_matching.Rd ├── moran.Rd ├── netdiffuseR-graphs.Rd ├── netdiffuseR-options.Rd ├── netdiffuseR.Rd ├── netmatch.Rd ├── network.Rd ├── nvertices.Rd ├── permute_graph.Rd ├── plot.diffnet.Rd ├── plot_adopters.Rd ├── plot_diffnet.Rd ├── plot_diffnet2.Rd ├── plot_infectsuscep.Rd ├── plot_threshold.Rd ├── pretty_within.Rd ├── rdiffnet.Rd ├── read_pajek.Rd ├── read_ucinet_head.Rd ├── recode.Rd ├── rescale_vertex_igraph.Rd ├── rewire_graph.Rd ├── rgraph_ba.Rd ├── rgraph_er.Rd ├── rgraph_ws.Rd ├── ring_lattice.Rd ├── round_to_seq.Rd ├── select_egoalter.Rd ├── split_behaviors.Rd ├── struct_equiv.Rd ├── struct_test.Rd ├── summary.diffnet.Rd ├── survey_to_diffnet.Rd ├── threshold.Rd ├── toa_diff.Rd ├── toa_mat.Rd ├── transformGraphBy.Rd ├── vertex_covariate_compare.Rd ├── vertex_covariate_dist.Rd └── weighted_var.Rd ├── netdiffuseR.Rproj ├── next_release.md ├── playground ├── attrs.R ├── curved.R ├── epimodel │ ├── epimodel.r │ ├── epimodel_notes.md │ ├── epimodel_notes.rmd │ └── epimodel_notes_cache │ │ ├── html │ │ ├── __packages │ │ ├── sim_e1d340f2c40d6e3e4ed9c7061e1757d2.RData │ │ ├── sim_e1d340f2c40d6e3e4ed9c7061e1757d2.rdb │ │ └── sim_e1d340f2c40d6e3e4ed9c7061e1757d2.rdx │ │ └── markdown_github-ascii_identifiers │ │ ├── __packages │ │ ├── sim_0ea3387c274ae47647171b010a6f0453.RData │ │ ├── sim_0ea3387c274ae47647171b010a6f0453.rdb │ │ └── sim_0ea3387c274ae47647171b010a6f0453.rdx ├── exposure-ans-discussion.R ├── exposure-out-discussion.R ├── indexing.R ├── sna_sedist_function.R └── split_behavior_discussion.R ├── scripts └── check-github-actions-local.sh ├── src ├── Makevars.in ├── Makevars.win ├── RcppExports.cpp ├── adjmat.cpp ├── adjmat.h ├── infection.cpp ├── infection.h ├── netdiffuser_extra.cpp ├── netdiffuser_extra.h ├── plot.cpp ├── plot.h ├── rgraph.cpp ├── rgraph.h ├── stats.cpp ├── stats.h ├── struct_test.cpp └── struct_test.h ├── tests ├── testthat.R └── testthat │ ├── test-adjmat.R │ ├── test-bass.r │ ├── test-bootnet.r │ ├── test-cumulative_adopt_count.R │ ├── test-degree-adoption-diagnostic.R │ ├── test-dgr.R │ ├── test-diffnet-class.R │ ├── test-diffnet-indexing.R │ ├── test-diffnet-methods.R │ ├── test-egonets.R │ ├── test-examples.R │ ├── test-foreign.R │ ├── test-formula.R │ ├── test-graph_data.R │ ├── test-imports.R │ ├── test-infect_suscept.R │ ├── test-mentor.r │ ├── test-misc.R │ ├── test-moran.r │ ├── test-netdiffuser_extra.R │ ├── test-options.R │ ├── test-plot_diffnet2.R │ ├── test-random_graph.R │ ├── test-rdiffnet-parameters.R │ ├── test-rdiffnet.R │ ├── test-read_write_foreign.R │ ├── test-rewire.R │ ├── test-select_egoalter.R │ ├── test-spatial.R │ ├── test-stats.R │ ├── test-struct_equiv.R │ ├── test-struct_test.R │ └── test-survey_to_diffnet.R └── vignettes ├── 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