├── .Rbuildignore ├── .github └── workflows │ ├── ci.yml │ └── website.yml ├── .gitignore ├── CODE_OF_CONDUCT.md ├── CRAN-RELEASE ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── Makefile ├── NAMESPACE ├── NEWS.md ├── R ├── JOB_STATE_CODES.R ├── Slurm_EvalQ.R ├── Slurm_Map.R ├── Slurm_collect.R ├── Slurm_lapply.R ├── Slurm_log.R ├── Slurm_sapply.R ├── bash.R ├── bashscript.R ├── docker.R ├── expand_array_indexes.R ├── makeSlurmCluster.R ├── options.R ├── read_sbatch.R ├── rscript.R ├── sacct_safe.R ├── sbatch.R ├── slurmR.R ├── slurm_job.R ├── sourceSlurm.R ├── status.R ├── the_plan.R ├── utils.R └── wait.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── appveyor.yml ├── comparing-projects.csv ├── cran-comments.md ├── data-raw └── JOB_STATE_CODES.R ├── docker ├── Dockerfile.interactive ├── Dockerfile.rcmdcheck ├── Makefile ├── README.md ├── id_rsa ├── id_rsa.pub ├── rcheck.sh └── start-services-alt.sh ├── inst ├── CITATION ├── NEWS ├── WORDLIST ├── docker │ ├── id_rsa │ ├── id_rsa.pub │ └── start.sh ├── example.R ├── example.slurm └── tinytest │ ├── test-Slurm_Map.R │ ├── test-Slurm_collect.R │ ├── test-Slurm_lapply.R │ ├── test-Slurm_log.R │ ├── test-bash.R │ ├── test-expand_array_indexes.R │ ├── test-makeSlurmCluster.R │ ├── test-options.R │ ├── test-slurm_job-class.R │ ├── test-sourceSlurm.R │ ├── test-the_plan.R │ ├── test-utils.R │ └── test-wait_slurm.R ├── man-roxygen ├── job_name-tmp_path.R ├── njobs.R ├── rscript_opt.R ├── sbatch_opt.R └── slurm.R ├── man ├── JOB_STATE_CODES.Rd ├── Slurm_EvalQ.Rd ├── Slurm_clean.Rd ├── Slurm_collect.Rd ├── Slurm_env.Rd ├── Slurm_lapply.Rd ├── Slurm_log.Rd ├── WhoAmI.Rd ├── expand_array_indexes.Rd ├── figures │ ├── logo.png │ └── logo.svg ├── makeSlurmCluster.Rd ├── new_rscript.Rd ├── opts_slurmR.Rd ├── parse_flags.Rd ├── random_job_name.Rd ├── read_sbatch.Rd ├── sbatch.Rd ├── slurmR.Rd ├── slurm_job.Rd ├── slurmr_docker.Rd ├── snames.Rd ├── sourceSlurm.Rd ├── status.Rd ├── the_plan.Rd └── wait_slurm.Rd ├── paper ├── paper.bib └── paper.md ├── slurmR.Rproj ├── tests └── tinytest.R └── vignettes ├── .gitignore ├── debugging-re-submission.Rmd ├── getting-started.Rmd └── working-with-slurm.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USCbiostats/slurmR/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/workflows/ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USCbiostats/slurmR/HEAD/.github/workflows/ci.yml -------------------------------------------------------------------------------- /.github/workflows/website.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USCbiostats/slurmR/HEAD/.github/workflows/website.yml -------------------------------------------------------------------------------- /.gitignore: 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