├── CCTM ├── src │ ├── aero │ │ ├── aero7 │ │ ├── cracmm │ │ └── aero6 │ │ │ └── README.md │ ├── cloud │ │ ├── acm_ae7 │ │ ├── acm_cracmm │ │ ├── acm_ae6_mp │ │ │ ├── acmcld.f │ │ │ ├── indexn.f │ │ │ ├── opwdep.F │ │ │ ├── getalpha.F │ │ │ ├── hlconst.F │ │ │ └── scavwdep.F │ │ └── acm_ae7_kmt2 │ │ │ ├── acmcld.f │ │ │ ├── aq_map.F │ │ │ ├── hlconst.F │ │ │ ├── indexn.f │ │ │ ├── opwdep.F │ │ │ ├── rescld.F │ │ │ ├── getalpha.F │ │ │ ├── scavwdep.F │ │ │ ├── cldproc_acm.F │ │ │ └── convcld_acm.F │ ├── gas │ │ ├── ebi_cb6r5hap_ae7_aq │ │ ├── ebi_cb6r5_ae7_aqkmt2 │ │ └── ebi_saprc07tic_ae7i_aqkmt2 │ ├── depv │ │ └── stage │ │ │ └── cgrid_depv.F │ ├── vadv │ │ └── wrf_cons │ │ │ └── vppm.F │ ├── vdiff │ │ └── acm2_stage │ │ │ ├── tri.F │ │ │ ├── eddyx.F │ │ │ ├── matrix1.F │ │ │ ├── aero_sedv.F │ │ │ ├── VDIFF_DATA.F │ │ │ ├── VDIFF_DIAG.F │ │ │ ├── conv_cgrid.F │ │ │ └── SEDIMENTATION.F │ ├── MECHS │ │ ├── cb6r5_ae7_aqkmt2 │ │ │ ├── NR_cb6r5_ae7_aq.nml │ │ │ ├── RXNS_DATA_MODULE.F90 │ │ │ ├── RXNS_FUNC_MODULE.F90 │ │ │ ├── pa_cb6r5_ae7_aq.ctl │ │ │ ├── CSQY_DATA_cb6r5_ae7_aq │ │ │ ├── mech_cb6r5_ae7_aq.def │ │ │ ├── SpecDef_cb6r5_ae7_aq.txt │ │ │ ├── SpecDef_Dep_cb6r5_ae7_aq.txt │ │ │ └── CMAQ_Control_DESID_cb6r5_ae7_aq.nml │ │ ├── cb6r5hap_ae7_aq │ │ │ ├── GC_cb6r5hap_ae7_aq.nml │ │ │ ├── RXNS_DATA_MODULE.F90 │ │ │ ├── RXNS_FUNC_MODULE.F90 │ │ │ ├── pa_cb6r5hap_ae7_aq.ctl │ │ │ ├── mech_cb6r5hap_ae7_aq.def │ │ │ └── CSQY_DATA_cb6r5hap_ae7_aq │ │ ├── cracmm1amore_aq │ │ │ ├── AE_cracmm1amore_aq.nml │ │ │ ├── NR_cracmm1amore_aq.nml │ │ │ ├── CMAQ_Control_DESID_cracmm1amore_aq.nml │ │ │ └── cracmm1amore_aq_speciesdescription.csv │ │ ├── trac0 │ │ │ └── Species_Table_TR_0.nml │ │ ├── saprc07tic_ae7i_aqkmt2 │ │ │ ├── RXNS_DATA_MODULE.F90 │ │ │ ├── RXNS_FUNC_MODULE.F90 │ │ │ ├── NR_saprc07tic_ae7i_aq.nml │ │ │ ├── CSQY_DATA_saprc07tic_ae7i_aq │ │ │ ├── mech_saprc07tic_ae7i_aq.def │ │ │ ├── pa_saprc07tic_ae7i_aqkmt2.ctl │ │ │ ├── SpecDef_saprc07tic_ae7i_aq.txt │ │ │ ├── SpecDef_Dep_saprc07tic_ae7i_aq.txt │ │ │ └── CMAQ_Control_DESID_saprc07tic_ae7i_aq.nml │ │ ├── mechanism_information │ │ │ ├── cb6r5_ae7_aqkmt2 │ │ │ │ ├── AE7_species_table.md │ │ │ │ ├── mech_cb6r5_ae7_aqkmt2.md │ │ │ │ └── cb6r5_ae7_aqkmt2_species_table.md │ │ │ ├── saprc07tic_ae7i_aqkmt2 │ │ │ │ ├── mech_saprc07tic_ae7i_aq.md │ │ │ │ ├── saprc07tic_ae7i_kmt2_species_table.md │ │ │ │ └── saprc07tic_ae6i_aq_species_table_aerosol.md │ │ │ ├── cb6r3_ae7_aq │ │ │ │ └── NR7_species_table.md │ │ │ ├── cb6r5_ae7_aq │ │ │ │ └── NR7_species_table.md │ │ │ ├── cb6r5m_ae7_aq │ │ │ │ └── NR7_species_table.md │ │ │ └── saprc07tic_ae7i_aq │ │ │ │ └── NR7_species_table.md │ │ ├── cracmm2 │ │ │ └── NR_cracmm2.nml │ │ ├── cracmm1_aq │ │ │ └── NR_cracmm1_aq.nml │ │ ├── cb6r5m_ae7_aq │ │ │ └── pa_cb6r5m_ae7_aq.ctl │ │ ├── racm2_ae6_aq │ │ │ └── pa_racm2_ae6_aq.ctl │ │ ├── saprc07tc_ae6_aq │ │ │ └── pa_saprc07tc_ae6_aq.ctl │ │ └── saprc07tic_ae7i_aq │ │ │ └── pa_saprc07tic_ae7i_aq.ctl │ ├── phot │ │ └── inline │ │ │ ├── twoway_rrtmg_aero_optics.F90 │ │ │ ├── CLOUD_OPTICS.F │ │ │ └── PHOT_MET_DATA.F │ ├── isam │ │ └── SA_IRR_DEFN.F │ ├── ICL │ │ └── fixed │ │ │ └── emctrl │ │ │ └── EMISPRM.EXT │ ├── ddm3d │ │ └── dact.inc │ └── twoway │ │ └── twoway_header_data_module.F90 └── scripts │ └── lonlat.csv ├── PREP ├── icon │ ├── map2mech │ └── src │ │ └── profile │ │ ├── legacy_PM_toxics_profile.csv │ │ ├── avprofile_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv │ │ ├── avprofile_racm_ae6_aq_derived_from_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv │ │ ├── avprofile_saprc07tc_ae6_aq_derived_from_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv │ │ └── avprofile_saprc07tic_ae7i_aq_derived_from_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv ├── create_omi │ └── image_files │ │ ├── omi_ozone_column_17X17_May_10_2018.png │ │ ├── omi_ozone_column_179X361_May_10_2018.png │ │ └── omi_ozone_column_720X1440_May_10_2018.png ├── README.md └── bcon │ └── src │ └── profile │ └── legacy_PM_toxics_profile.csv ├── POST ├── writesite │ └── inputs │ │ └── sites.txt ├── hr2day │ └── inputs │ │ └── tz.csv └── combine │ └── scripts │ └── spec_def_files │ ├── SpecDef_cracmm1_aq.txt │ ├── SpecDef_Dep_cracmm1_aq.txt │ ├── SpecDef_cb6r3_ae7_aq.txt │ ├── SpecDef_cb6r5_ae7_aq.txt │ ├── SpecDef_cb6r5m_ae7_aq.txt │ ├── SpecDef_racm2_ae6_aq.txt │ ├── SpecDef_Dep_cb6r3_ae7_aq.txt │ ├── SpecDef_Dep_cb6r5_ae7_aq.txt │ ├── SpecDef_Dep_racm2_ae6_aq.txt │ ├── SpecDef_cb6r5hap_ae7_aq.txt │ ├── SpecDef_cracmm1amore_aq.txt │ ├── SpecDef_Dep_cb6r5m_ae7_aq.txt │ ├── SpecDef_saprc07tc_ae6_aq.txt │ ├── SpecDef_Dep_cb6r5hap_ae7_aq.txt │ ├── SpecDef_Dep_cracmm1amore_aq.txt │ ├── SpecDef_saprc07tic_ae7i_aq.txt │ ├── SpecDef_Dep_saprc07tc_ae6_aq.txt │ └── SpecDef_Dep_saprc07tic_ae7i_aq.txt ├── UTIL ├── inline_phot_preproc │ ├── photolysis_CSQY_data │ │ ├── GLYD_IUPAC13 │ │ ├── NBO_14 │ │ ├── NOA_14 │ │ ├── ACET-06 │ │ ├── ACET_06 │ │ ├── MEK-06 │ │ ├── MEK_06 │ │ ├── MGLY-06 │ │ ├── MGLY_06 │ │ ├── MVK-06 │ │ ├── MVK_06 │ │ ├── HCHOM-06 │ │ ├── HCHOM_06 │ │ ├── HCHOR-06 │ │ ├── HCHOR_06 │ │ ├── MVKN_RACM2 │ │ ├── NOA_MCMv32 │ │ ├── PACD_CB05 │ │ ├── ETHLN_RACM2 │ │ ├── HPALD_MCMv32 │ │ ├── MACRN_RACM2 │ │ ├── NOA_B_MCMv32 │ │ ├── NOA_T_MCMv32 │ │ ├── PROPNN_RACM2 │ │ ├── HYDRO_ACET_CRI │ │ ├── HO2NO2_IUPAC04 │ │ ├── BRO │ │ ├── BRO_IUPAC2014 │ │ ├── BRO_IUPAC14 │ │ ├── BRO_IUPAC10 │ │ ├── NTR_IUPAC04 │ │ ├── PROPANAL_IUPAC │ │ ├── PROPANAL_IUPAC_1st_try │ │ ├── INO_06 │ │ ├── MB2C │ │ ├── MBC2 │ │ ├── MB2C_BLIDE98 │ │ ├── MBC2_BLIDE98 │ │ ├── NTR_IUPAC10 │ │ ├── CHBR2CL_BILDE1998 │ │ ├── ISOPNB_RACM2 │ │ ├── NITROXY_BUTA_2014 │ │ ├── CHBRCL2_BILDE1998 │ │ ├── O2_RADM88 │ │ ├── IO_IUPAC10 │ │ ├── C2CHO_R_MCMv32 │ │ ├── HONO_RADM88 │ │ ├── BZCHO_SAPRC99 │ │ ├── CLONO2-1 │ │ ├── H2O2_NASA94 │ │ ├── KETONE_RADM88 │ │ ├── ACETONE_RADM88 │ │ ├── HO2NO2_SAPRC99 │ │ ├── CLNO2 │ │ ├── HONO_NASA94 │ │ ├── CH3I_IUPAC10 │ │ ├── NOA_0_MCMv32 │ │ ├── O2_NASA94 │ │ ├── IC3ONO2_SAPRC99 │ │ ├── PNA_IUPAC10 │ │ ├── NOA │ │ ├── COOH_SAPRC99 │ │ ├── NITROXY_ACET_93 │ │ ├── NITROXY_ACET_2014 │ │ ├── H2O2_SAPRC99 │ │ ├── HNO3_SAPRC99 │ │ ├── INO2_06 │ │ ├── HNO3_IUPAC04 │ │ ├── MIB_IUPAC10 │ │ ├── MI2_IUPAC10 │ │ ├── CL2 │ │ ├── FMCL_IUPAC04 │ │ ├── ORGNIT_RADM88 │ │ ├── MIC_IUPAC10 │ │ ├── ICL_IUPAC10 │ │ ├── ISOPND_RACM2 │ │ ├── IONO2_06 │ │ ├── O3O1D_CBIV88 │ │ ├── IBR_IUPAC10 │ │ ├── BRCL │ │ ├── BRCL_IUPAC10 │ │ ├── MEPX_IUPAC10 │ │ ├── BRCL_IUPAC2014 │ │ ├── H2O2_IUPAC10 │ │ ├── HNO3_IUPAC10 │ │ ├── H2O2 │ │ ├── HNO3 │ │ ├── HOI_IUPAC10 │ │ ├── CH3OOH_MCMv32 │ │ ├── CLONO │ │ ├── CLONO2-2 │ │ ├── COOH │ │ ├── IMONIT_RACM2 │ │ ├── TBUTNO3_MCMv32 │ │ ├── HNO4-06 │ │ ├── IC3ONO2 │ │ ├── ALD_CBIV88 │ │ ├── C2CHO_SAPRC99 │ │ ├── HCHOrad_NASA94 │ │ ├── O2_JPL06-2 │ │ ├── CL2_IUPAC04 │ │ ├── CL2_IUPAC04_mod │ │ ├── BRNO2 │ │ ├── HCHOrad_RADM88 │ │ ├── BRNO2_IUPAC10 │ │ ├── HCHOmol_NASA94 │ │ ├── BRNO2_IUPAC2014 │ │ ├── HCHOmol_RADM88 │ │ ├── OIO_06 │ │ ├── HCHOrad_CBIV88 │ │ └── HNO4_06 │ ├── src │ │ ├── INLINE_CSQY.F │ │ ├── CSQY_REFER_DATA.F │ │ ├── JPROC_PHOT_DATA.F │ │ ├── CSQY_DATA-p05cm-UCI.f │ │ ├── CSQY_DATA-solflx-lowtran.f │ │ └── Make_processor │ ├── raw_alebo_data │ │ └── anderson-nlcd_landuse.dat │ ├── refractive_indices │ │ └── OPAC_water_clouds │ │ │ ├── HU_STAMNES_cloud_optics.dat │ │ │ └── soot00-two_way-Oct_21_2012 │ ├── ice_clouds │ │ └── fu96.ext │ └── input │ │ └── cb05e51_ae6_aq │ │ └── NR_cb05e51_ae6_aq.nml ├── chemmech │ ├── docs │ │ ├── Brief_on_Changes_to_CMAQ_Chemical_Mechanism_Data.pdf │ │ └── readme.txt │ └── src │ │ └── MECHANISM_PARMS.f ├── create_ebi │ ├── template_RXNSU_OPT │ │ ├── cvs_header.txt │ │ └── copyright.txt │ ├── docs │ │ └── README.txt │ └── src │ │ └── NOTICE.EXT ├── bldmake │ ├── src │ │ └── Makefile │ └── README.md └── nml │ └── scripts │ └── nml2csv.csh ├── PYTOOLS ├── shp2cmaq │ └── requirements.txt ├── dmschlo │ ├── .gitignore │ └── requirements.txt ├── install │ ├── requirements.txt │ ├── environment.yml │ └── show_versions.py └── README.md ├── DOCS ├── Logos │ ├── CMAQ_Logo.pdf │ ├── CMAQ_Logo_2inch.png │ └── README.md ├── Users_Guide │ ├── Tutorials │ │ ├── edison.png │ │ ├── kraken.png │ │ ├── dell_big.png │ │ ├── dell_small.png │ │ ├── CMAQ_UG_tutorial_running_benchmarks.md │ │ └── README.md │ ├── images │ │ ├── Figure10-1.png │ │ ├── Figure10-2.png │ │ ├── Figure2-1.jpg │ │ ├── Figure5-1.png │ │ ├── Figure6-1.JPG │ │ ├── Figure6-2.png │ │ ├── Figure9-3.png │ │ ├── FigureD-1.png │ │ ├── FigureD-2.png │ │ ├── FigureD-3.png │ │ ├── FigureD-4.png │ │ ├── FigureD-5.png │ │ ├── FigureD-6.png │ │ ├── FigureD-7.png │ │ ├── FigureD-8.png │ │ ├── FigureD-9.png │ │ ├── FigureF-1.png │ │ ├── FigureF-2.png │ │ ├── FigureF-2b.png │ │ ├── Figure4-3-1.png │ │ ├── Figure6_8_2.png │ │ ├── Figure_6-11_1.png │ │ └── Figure_6-11_2.png │ ├── PDF │ │ ├── CMAQ_UG_09_2019.pdf │ │ └── PX-ACM-WRFV4.6-MPAS.pdf │ ├── Supplement │ │ └── CMAQ_ISAM_Chemistry_Supplemental_Equations.pdf │ ├── templates │ │ └── template.markdown │ ├── Appendix │ │ └── README.md │ ├── filter │ │ └── comments.py │ └── readme.pandoc ├── Release_Notes │ ├── images │ │ └── CMAQ_Forum.png │ ├── CMAQ-Release-Notes:-Emissions-Updates:-Gridded-Emissions.md │ ├── CMAQ-Release-Notes:-Emissions-Updates:-Marine-Gas-Emissions.md │ ├── CMAQ-Release-Notes:-Emissions-Updates:-Sea-Spray-Aerosol-Emissions.md │ ├── CMAQ-Release-Notes:-Emissions-Updates:-Point-Source-Emissions.md │ ├── CMAQ-Release-Notes:-Chemistry:-State-Air-Pollution-Research-Center-(SAPRC).md │ ├── CMAQ-Release-Notes:-Dry-Deposition-Air-Surface-Exchange.md │ ├── CMAQ-Release-Notes:-Emissions-Updates:-Lightning-Emissions.md │ ├── CMAQ-Release-Notes:-Instrumented-Models.md │ ├── CMAQ-Release-Notes:-Transport-Processes.md │ ├── CMAQ-Release-Notes:-Emissions-Updates:-Environmental-Policy-Integrated-Climate-(EPIC)-Model.md │ ├── CMAQ-Release-Notes:-Emissions-Updates.md │ ├── CMAQ-Release-Notes:-Chemistry.md │ └── CMAQ-Release-Notes:-Dry-Deposition-Air-Surface-Exchange:-Generalized-Changes.md ├── Developers_Guide │ ├── PDF │ │ └── CMAQ_Dev_Guide.pdf │ └── readme.pandoc ├── Release_FAQ │ └── README.md └── Community_Support.md ├── .github ├── PULL_REQUEST_TEMPLATE.md └── ISSUE_TEMPLATE │ └── new-issue-.md ├── license.md └── .gitignore /CCTM/src/aero/aero7: -------------------------------------------------------------------------------- 1 | aero6 -------------------------------------------------------------------------------- /CCTM/src/aero/cracmm: -------------------------------------------------------------------------------- 1 | aero6 -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7: -------------------------------------------------------------------------------- 1 | acm_ae6 -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_cracmm: -------------------------------------------------------------------------------- 1 | acm_ae6 -------------------------------------------------------------------------------- /PREP/icon/map2mech: -------------------------------------------------------------------------------- 1 | ../bcon/map2mech/ -------------------------------------------------------------------------------- /CCTM/src/gas/ebi_cb6r5hap_ae7_aq: -------------------------------------------------------------------------------- 1 | ebi_cb6r5_ae7_aq -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae6_mp/acmcld.f: -------------------------------------------------------------------------------- 1 | ../acm_ae6/acmcld.f -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae6_mp/indexn.f: -------------------------------------------------------------------------------- 1 | ../acm_ae6/indexn.f -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae6_mp/opwdep.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/opwdep.F -------------------------------------------------------------------------------- /CCTM/src/depv/stage/cgrid_depv.F: -------------------------------------------------------------------------------- 1 | ../m3dry/cgrid_depv.F -------------------------------------------------------------------------------- /CCTM/src/gas/ebi_cb6r5_ae7_aqkmt2: -------------------------------------------------------------------------------- 1 | ebi_cb6r5_ae7_aq -------------------------------------------------------------------------------- /CCTM/src/vadv/wrf_cons/vppm.F: -------------------------------------------------------------------------------- 1 | ../local_cons/vppm.F -------------------------------------------------------------------------------- /CCTM/src/vdiff/acm2_stage/tri.F: -------------------------------------------------------------------------------- 1 | ../acm2_m3dry/tri.F -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae6_mp/getalpha.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/getalpha.F -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae6_mp/hlconst.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/hlconst.F -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae6_mp/scavwdep.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/scavwdep.F -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7_kmt2/acmcld.f: -------------------------------------------------------------------------------- 1 | ../acm_ae6/acmcld.f -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7_kmt2/aq_map.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/aq_map.F -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7_kmt2/hlconst.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/hlconst.F -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7_kmt2/indexn.f: -------------------------------------------------------------------------------- 1 | ../acm_ae6/indexn.f -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7_kmt2/opwdep.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/opwdep.F -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7_kmt2/rescld.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/rescld.F -------------------------------------------------------------------------------- /CCTM/src/vdiff/acm2_stage/eddyx.F: -------------------------------------------------------------------------------- 1 | ../acm2_m3dry/eddyx.F -------------------------------------------------------------------------------- /CCTM/src/vdiff/acm2_stage/matrix1.F: -------------------------------------------------------------------------------- 1 | ../acm2_m3dry/matrix1.F -------------------------------------------------------------------------------- /POST/writesite/inputs/sites.txt: -------------------------------------------------------------------------------- 1 | 7440, -74.75, 40.75 2 | -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7_kmt2/getalpha.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/getalpha.F -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7_kmt2/scavwdep.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/scavwdep.F -------------------------------------------------------------------------------- /CCTM/src/gas/ebi_saprc07tic_ae7i_aqkmt2: -------------------------------------------------------------------------------- 1 | ebi_saprc07tic_ae7i_aq -------------------------------------------------------------------------------- /CCTM/src/vdiff/acm2_stage/aero_sedv.F: -------------------------------------------------------------------------------- 1 | ../acm2_m3dry/aero_sedv.F -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7_kmt2/cldproc_acm.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/cldproc_acm.F -------------------------------------------------------------------------------- /CCTM/src/cloud/acm_ae7_kmt2/convcld_acm.F: -------------------------------------------------------------------------------- 1 | ../acm_ae6/convcld_acm.F -------------------------------------------------------------------------------- /CCTM/src/vdiff/acm2_stage/VDIFF_DATA.F: -------------------------------------------------------------------------------- 1 | ../acm2_m3dry/VDIFF_DATA.F -------------------------------------------------------------------------------- /CCTM/src/vdiff/acm2_stage/VDIFF_DIAG.F: -------------------------------------------------------------------------------- 1 | ../acm2_m3dry/VDIFF_DIAG.F -------------------------------------------------------------------------------- /CCTM/src/vdiff/acm2_stage/conv_cgrid.F: -------------------------------------------------------------------------------- 1 | ../acm2_m3dry/conv_cgrid.F -------------------------------------------------------------------------------- /CCTM/src/vdiff/acm2_stage/SEDIMENTATION.F: -------------------------------------------------------------------------------- 1 | ../acm2_m3dry/SEDIMENTATION.F -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/GLYD_IUPAC13: -------------------------------------------------------------------------------- 1 | GLYD_IUPAC10 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NBO_14: -------------------------------------------------------------------------------- 1 | NITROXY_BUTA_2014 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NOA_14: -------------------------------------------------------------------------------- 1 | NITROXY_ACET_2014 -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5_ae7_aqkmt2/NR_cb6r5_ae7_aq.nml: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/NR_cb6r5_ae7_aq.nml -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5_ae7_aqkmt2/RXNS_DATA_MODULE.F90: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/RXNS_DATA_MODULE.F90 -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5_ae7_aqkmt2/RXNS_FUNC_MODULE.F90: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/RXNS_FUNC_MODULE.F90 -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5_ae7_aqkmt2/pa_cb6r5_ae7_aq.ctl: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/pa_cb6r5_ae7_aq.ctl -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5hap_ae7_aq/GC_cb6r5hap_ae7_aq.nml: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/GC_cb6r5_ae7_aq.nml -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5hap_ae7_aq/RXNS_DATA_MODULE.F90: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/RXNS_DATA_MODULE.F90 -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5hap_ae7_aq/RXNS_FUNC_MODULE.F90: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/RXNS_FUNC_MODULE.F90 -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5hap_ae7_aq/pa_cb6r5hap_ae7_aq.ctl: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/pa_cb6r5_ae7_aq.ctl -------------------------------------------------------------------------------- /CCTM/src/MECHS/cracmm1amore_aq/AE_cracmm1amore_aq.nml: -------------------------------------------------------------------------------- 1 | ../cracmm1_aq/AE_cracmm1_aq.nml -------------------------------------------------------------------------------- /CCTM/src/MECHS/cracmm1amore_aq/NR_cracmm1amore_aq.nml: -------------------------------------------------------------------------------- 1 | ../cracmm1_aq/NR_cracmm1_aq.nml -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5_ae7_aqkmt2/CSQY_DATA_cb6r5_ae7_aq: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/CSQY_DATA_cb6r5_ae7_aq -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5_ae7_aqkmt2/mech_cb6r5_ae7_aq.def: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/mech_cb6r5_ae7_aq.def -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5hap_ae7_aq/mech_cb6r5hap_ae7_aq.def: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/mech_cb6r5_ae7_aq.def -------------------------------------------------------------------------------- /CCTM/src/phot/inline/twoway_rrtmg_aero_optics.F90: -------------------------------------------------------------------------------- 1 | ../../twoway/twoway_rrtmg_aero_optics.F90 -------------------------------------------------------------------------------- /PYTOOLS/shp2cmaq/requirements.txt: -------------------------------------------------------------------------------- 1 | cmaqsatproc 2 | geopandas 3 | xarray 4 | netcdf4 5 | pycno -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5_ae7_aqkmt2/SpecDef_cb6r5_ae7_aq.txt: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/SpecDef_cb6r5_ae7_aq.txt -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5hap_ae7_aq/CSQY_DATA_cb6r5hap_ae7_aq: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/CSQY_DATA_cb6r5_ae7_aq -------------------------------------------------------------------------------- /CCTM/src/MECHS/trac0/Species_Table_TR_0.nml: -------------------------------------------------------------------------------- 1 | &TR_nml 2 | 3 | TR_SPECIES_DATA = 4 | 5 | / 6 | -------------------------------------------------------------------------------- /DOCS/Logos/CMAQ_Logo.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Logos/CMAQ_Logo.pdf -------------------------------------------------------------------------------- /POST/hr2day/inputs/tz.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/POST/hr2day/inputs/tz.csv -------------------------------------------------------------------------------- /PYTOOLS/dmschlo/.gitignore: -------------------------------------------------------------------------------- 1 | output 2 | cdogrids 3 | chlor_a 4 | dmsclimatology 5 | miniconda 6 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tic_ae7i_aqkmt2/RXNS_DATA_MODULE.F90: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/RXNS_DATA_MODULE.F90 -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tic_ae7i_aqkmt2/RXNS_FUNC_MODULE.F90: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/RXNS_FUNC_MODULE.F90 -------------------------------------------------------------------------------- /CCTM/src/isam/SA_IRR_DEFN.F: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/CCTM/src/isam/SA_IRR_DEFN.F -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5_ae7_aqkmt2/SpecDef_Dep_cb6r5_ae7_aq.txt: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/SpecDef_Dep_cb6r5_ae7_aq.txt -------------------------------------------------------------------------------- /DOCS/Logos/CMAQ_Logo_2inch.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Logos/CMAQ_Logo_2inch.png -------------------------------------------------------------------------------- /PREP/icon/src/profile/legacy_PM_toxics_profile.csv: -------------------------------------------------------------------------------- 1 | ../../../bcon/src/profile/legacy_PM_toxics_profile.csv -------------------------------------------------------------------------------- /CCTM/src/MECHS/mechanism_information/cb6r5_ae7_aqkmt2/AE7_species_table.md: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/AE7_species_table.md -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tic_ae7i_aqkmt2/NR_saprc07tic_ae7i_aq.nml: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/NR_saprc07tic_ae7i_aq.nml -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5_ae7_aqkmt2/CMAQ_Control_DESID_cb6r5_ae7_aq.nml: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/CMAQ_Control_DESID_cb6r5_ae7_aq.nml -------------------------------------------------------------------------------- /CCTM/src/MECHS/cracmm1amore_aq/CMAQ_Control_DESID_cracmm1amore_aq.nml: -------------------------------------------------------------------------------- 1 | ../cracmm1_aq/CMAQ_Control_DESID_cracmm1_aq.nml -------------------------------------------------------------------------------- /CCTM/src/MECHS/cracmm1amore_aq/cracmm1amore_aq_speciesdescription.csv: -------------------------------------------------------------------------------- 1 | ../cracmm1_aq/cracmm1_aq_speciesdescription.csv -------------------------------------------------------------------------------- /CCTM/src/MECHS/mechanism_information/cb6r5_ae7_aqkmt2/mech_cb6r5_ae7_aqkmt2.md: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/mech_cb6r5_ae7_aq.md -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tic_ae7i_aqkmt2/CSQY_DATA_saprc07tic_ae7i_aq: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/CSQY_DATA_saprc07tic_ae7i_aq -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tic_ae7i_aqkmt2/mech_saprc07tic_ae7i_aq.def: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/mech_saprc07tic_ae7i_aq.def -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tic_ae7i_aqkmt2/pa_saprc07tic_ae7i_aqkmt2.ctl: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/pa_saprc07tic_ae7i_aq.ctl -------------------------------------------------------------------------------- /CCTM/src/phot/inline/CLOUD_OPTICS.F: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/CCTM/src/phot/inline/CLOUD_OPTICS.F -------------------------------------------------------------------------------- /CCTM/src/phot/inline/PHOT_MET_DATA.F: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/CCTM/src/phot/inline/PHOT_MET_DATA.F -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_cracmm1_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cracmm1_aq/SpecDef_cracmm1_aq.txt -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tic_ae7i_aqkmt2/SpecDef_saprc07tic_ae7i_aq.txt: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/SpecDef_saprc07tic_ae7i_aq.txt -------------------------------------------------------------------------------- /DOCS/Users_Guide/Tutorials/edison.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/Tutorials/edison.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/Tutorials/kraken.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/Tutorials/kraken.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure10-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure10-1.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure10-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure10-2.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure2-1.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure2-1.jpg -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure5-1.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure6-1.JPG: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure6-1.JPG -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure6-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure6-2.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure9-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure9-3.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureD-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureD-1.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureD-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureD-2.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureD-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureD-3.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureD-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureD-4.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureD-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureD-5.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureD-6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureD-6.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureD-7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureD-7.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureD-8.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureD-8.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureD-9.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureD-9.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureF-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureF-1.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureF-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureF-2.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/FigureF-2b.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/FigureF-2b.png -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tic_ae7i_aqkmt2/SpecDef_Dep_saprc07tic_ae7i_aq.txt: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/SpecDef_Dep_saprc07tic_ae7i_aq.txt -------------------------------------------------------------------------------- /DOCS/Release_Notes/images/CMAQ_Forum.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Release_Notes/images/CMAQ_Forum.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/PDF/CMAQ_UG_09_2019.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/PDF/CMAQ_UG_09_2019.pdf -------------------------------------------------------------------------------- /DOCS/Users_Guide/Tutorials/dell_big.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/Tutorials/dell_big.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/Tutorials/dell_small.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/Tutorials/dell_small.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure4-3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure4-3-1.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure6_8_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure6_8_2.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure_6-11_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure_6-11_1.png -------------------------------------------------------------------------------- /DOCS/Users_Guide/images/Figure_6-11_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/images/Figure_6-11_2.png -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_Dep_cracmm1_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cracmm1_aq/SpecDef_Dep_cracmm1_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_cb6r3_ae7_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cb6r3_ae7_aq/SpecDef_cb6r3_ae7_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_cb6r5_ae7_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cb6r5_ae7_aq/SpecDef_cb6r5_ae7_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_cb6r5m_ae7_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cb6r5m_ae7_aq/SpecDef_cb6r5m_ae7_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_racm2_ae6_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/racm2_ae6_aq/SpecDef_racm2_ae6_aq.txt -------------------------------------------------------------------------------- /CCTM/src/MECHS/mechanism_information/cb6r5_ae7_aqkmt2/cb6r5_ae7_aqkmt2_species_table.md: -------------------------------------------------------------------------------- 1 | ../cb6r5_ae7_aq/cb6r5_ae7_aq_species_table.md -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_Dep_cb6r3_ae7_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cb6r3_ae7_aq/SpecDef_Dep_cb6r3_ae7_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_Dep_cb6r5_ae7_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cb6r5_ae7_aq/SpecDef_Dep_cb6r5_ae7_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_Dep_racm2_ae6_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/racm2_ae6_aq/SpecDef_Dep_racm2_ae6_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_cb6r5hap_ae7_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cb6r5hap_ae7_aq/SpecDef_cb6r5hap_ae7_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_cracmm1amore_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cracmm1amore_aq/SpecDef_cracmm1amore_aq.txt -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/src/INLINE_CSQY.F: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/src/INLINE_CSQY.F -------------------------------------------------------------------------------- /CCTM/src/MECHS/mechanism_information/saprc07tic_ae7i_aqkmt2/mech_saprc07tic_ae7i_aq.md: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/mech_saprc07tic_ae7i_aq.md -------------------------------------------------------------------------------- /DOCS/Developers_Guide/PDF/CMAQ_Dev_Guide.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Developers_Guide/PDF/CMAQ_Dev_Guide.pdf -------------------------------------------------------------------------------- /DOCS/Users_Guide/PDF/PX-ACM-WRFV4.6-MPAS.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/PDF/PX-ACM-WRFV4.6-MPAS.pdf -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_Dep_cb6r5m_ae7_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cb6r5m_ae7_aq/SpecDef_Dep_cb6r5m_ae7_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_saprc07tc_ae6_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/saprc07tc_ae6_aq/SpecDef_saprc07tc_ae6_aq.txt -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/src/CSQY_REFER_DATA.F: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/src/CSQY_REFER_DATA.F -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/src/JPROC_PHOT_DATA.F: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/src/JPROC_PHOT_DATA.F -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tic_ae7i_aqkmt2/CMAQ_Control_DESID_saprc07tic_ae7i_aq.nml: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/CMAQ_Control_DESID_saprc07tic_ae7i_aq.nml -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_Dep_cb6r5hap_ae7_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cb6r5hap_ae7_aq/SpecDef_Dep_cb6r5hap_ae7_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_Dep_cracmm1amore_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/cracmm1amore_aq/SpecDef_Dep_cracmm1amore_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_saprc07tic_ae7i_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/saprc07tic_ae7i_aq/SpecDef_saprc07tic_ae7i_aq.txt -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_Dep_saprc07tc_ae6_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/saprc07tc_ae6_aq/SpecDef_Dep_saprc07tc_ae6_aq.txt -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/src/CSQY_DATA-p05cm-UCI.f: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/src/CSQY_DATA-p05cm-UCI.f -------------------------------------------------------------------------------- /CCTM/scripts/lonlat.csv: -------------------------------------------------------------------------------- 1 | 4 # number of lon/lat pairs that follow 2 | -84.5684 32.8372 3 | -83.1034 33.7499 4 | -81.603 34.6438 5 | -80.0667 35.5179 6 | -------------------------------------------------------------------------------- /POST/combine/scripts/spec_def_files/SpecDef_Dep_saprc07tic_ae7i_aq.txt: -------------------------------------------------------------------------------- 1 | ../../../../CCTM/src/MECHS/saprc07tic_ae7i_aq/SpecDef_Dep_saprc07tic_ae7i_aq.txt -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/ACET-06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/ACET-06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/ACET_06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/ACET_06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MEK-06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/MEK-06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MEK_06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/MEK_06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MGLY-06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/MGLY-06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MGLY_06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/MGLY_06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MVK-06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/MVK-06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MVK_06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/MVK_06 -------------------------------------------------------------------------------- /CCTM/src/MECHS/mechanism_information/saprc07tic_ae7i_aqkmt2/saprc07tic_ae7i_kmt2_species_table.md: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/saprc07tic_ae7i_aq_species_table.md -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOM-06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOM-06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOM_06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOM_06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOR-06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOR-06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOR_06: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOR_06 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MVKN_RACM2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/MVKN_RACM2 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NOA_MCMv32: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/NOA_MCMv32 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/PACD_CB05: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/PACD_CB05 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/src/CSQY_DATA-solflx-lowtran.f: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/src/CSQY_DATA-solflx-lowtran.f -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/ETHLN_RACM2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/ETHLN_RACM2 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HPALD_MCMv32: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/HPALD_MCMv32 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MACRN_RACM2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/MACRN_RACM2 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NOA_B_MCMv32: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/NOA_B_MCMv32 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NOA_T_MCMv32: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/NOA_T_MCMv32 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/PROPNN_RACM2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/PROPNN_RACM2 -------------------------------------------------------------------------------- /CCTM/src/MECHS/mechanism_information/saprc07tic_ae7i_aqkmt2/saprc07tic_ae6i_aq_species_table_aerosol.md: -------------------------------------------------------------------------------- 1 | ../saprc07tic_ae7i_aq/saprc07tic_ae6i_aq_species_table_aerosol.md -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HYDRO_ACET_CRI: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/photolysis_CSQY_data/HYDRO_ACET_CRI -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Emissions-Updates:-Gridded-Emissions.md: -------------------------------------------------------------------------------- 1 | # Gridded Emissions Changes 2 | 3 | No changes were made to Gridded Emissions in CMAQv5.5. -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Emissions-Updates:-Marine-Gas-Emissions.md: -------------------------------------------------------------------------------- 1 | # Marine Gas Changes 2 | 3 | No changes were made to Marine Gas Emissions in CMAQv5.5. 4 | 5 | -------------------------------------------------------------------------------- /PREP/create_omi/image_files/omi_ozone_column_17X17_May_10_2018.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/PREP/create_omi/image_files/omi_ozone_column_17X17_May_10_2018.png -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/raw_alebo_data/anderson-nlcd_landuse.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/inline_phot_preproc/raw_alebo_data/anderson-nlcd_landuse.dat -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Emissions-Updates:-Sea-Spray-Aerosol-Emissions.md: -------------------------------------------------------------------------------- 1 | # Sea-Spray Aerosol Changes 2 | 3 | No changes were made to Sea Spray Emissions in CMAQv5.5. -------------------------------------------------------------------------------- /PREP/create_omi/image_files/omi_ozone_column_179X361_May_10_2018.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/PREP/create_omi/image_files/omi_ozone_column_179X361_May_10_2018.png -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Emissions-Updates:-Point-Source-Emissions.md: -------------------------------------------------------------------------------- 1 | # Point Source Emissions Changes 2 | 3 | No changes were made to Point Source Emissions in CMAQv5.5. -------------------------------------------------------------------------------- /PREP/create_omi/image_files/omi_ozone_column_720X1440_May_10_2018.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/PREP/create_omi/image_files/omi_ozone_column_720X1440_May_10_2018.png -------------------------------------------------------------------------------- /PREP/icon/src/profile/avprofile_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv: -------------------------------------------------------------------------------- 1 | ../../../bcon/src/profile/avprofile_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv -------------------------------------------------------------------------------- /UTIL/chemmech/docs/Brief_on_Changes_to_CMAQ_Chemical_Mechanism_Data.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/UTIL/chemmech/docs/Brief_on_Changes_to_CMAQ_Chemical_Mechanism_Data.pdf -------------------------------------------------------------------------------- /DOCS/Users_Guide/Supplement/CMAQ_ISAM_Chemistry_Supplemental_Equations.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/USEPA/CMAQ/HEAD/DOCS/Users_Guide/Supplement/CMAQ_ISAM_Chemistry_Supplemental_Equations.pdf -------------------------------------------------------------------------------- /PREP/icon/src/profile/avprofile_racm_ae6_aq_derived_from_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv: -------------------------------------------------------------------------------- 1 | ../../../bcon/src/profile/avprofile_racm_ae6_aq_derived_from_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv -------------------------------------------------------------------------------- /PREP/icon/src/profile/avprofile_saprc07tc_ae6_aq_derived_from_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv: -------------------------------------------------------------------------------- 1 | ../../../bcon/src/profile/avprofile_saprc07tc_ae6_aq_derived_from_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv -------------------------------------------------------------------------------- /PREP/icon/src/profile/avprofile_saprc07tic_ae7i_aq_derived_from_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv: -------------------------------------------------------------------------------- 1 | ../../../bcon/src/profile/avprofile_saprc07tic_ae7i_aq_derived_from_cb6r3m_ae7_kmtbr_hemi2016_v53beta2_m3dry_col051_row068.csv -------------------------------------------------------------------------------- /UTIL/create_ebi/template_RXNSU_OPT/cvs_header.txt: -------------------------------------------------------------------------------- 1 | C RCS file, release, date & time of last delta, author, state, [and locker] 2 | C $Header$ 3 | 4 | C what(1) key, module and SID; SCCS file; date and time of last delta: 5 | C %W% %P% %G% %U% 6 | -------------------------------------------------------------------------------- /PYTOOLS/dmschlo/requirements.txt: -------------------------------------------------------------------------------- 1 | setuptools >= 58.0 2 | importlib_metadata >= 4.6 3 | numpy >= 1.19.5 4 | pandas >= 1.1.5 5 | netCDF4 >= 1.5.8 6 | matplotlib >= 3.3.4 7 | pycno >= 0.2.0 8 | pyproj >= 2.6.1 9 | pseudonetcdf >= 3.2.0 10 | cdo == 1.5.3 11 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/refractive_indices/OPAC_water_clouds/HU_STAMNES_cloud_optics.dat: -------------------------------------------------------------------------------- 1 | 2 | DATA RADBIN_LOWER / 3 | & 2.5000E+00, 1.2500E+01, 3.0000E+01/ 4 | 5 | DATA RADBIN_LOWER / 6 | & 1.2500E+01, 3.0000E+01, 6.0000E+01/ 7 | -------------------------------------------------------------------------------- /DOCS/Logos/README.md: -------------------------------------------------------------------------------- 1 | # CMAQ Logo 2 | 3 | ![CMAQ_Logo_2inch](./CMAQ_Logo_2inch.png) 4 | 5 | 6 | CMAQ logo graphics files are in the public domain and available to download. 7 | * [2 inch CMAQ logo PNG file](CMAQ_Logo_2inch.png) 8 | * [CMAQ logo PDF file](CMAQ_Logo.pdf) 9 | -------------------------------------------------------------------------------- /DOCS/Developers_Guide/readme.pandoc: -------------------------------------------------------------------------------- 1 | pandoc command for creating the PDF 2 | 3 | pandoc -N --variable geometry:margin=1in --pdf-engine=xelatex --variable version=5.3 --variable title="CMAQv5.3 Developer Guide" --variable subtitle="09/10/2019" -s -o ./PDF/CMAQ_Dev_Guide.pdf CMAQ_Dev_Guide.md Code_Management.md 4 | -------------------------------------------------------------------------------- /PYTOOLS/install/requirements.txt: -------------------------------------------------------------------------------- 1 | setuptools >= 58.0 2 | importlib_metadata >= 4.6 3 | numpy >= 1.19.5 4 | pandas >= 1.1.5 5 | xarray >= 0.16.2 6 | scipy >= 1.5.4 7 | netCDF4 >= 1.5.8 8 | matplotlib >= 3.3.4 9 | basemap >= 1.3.0 10 | pycno >= 0.2.0 11 | pyproj >= 2.6.1 12 | pseudonetcdf >= 3.2.0 13 | cdo == 1.5.3 14 | -------------------------------------------------------------------------------- /DOCS/Users_Guide/templates/template.markdown: -------------------------------------------------------------------------------- 1 | $if(titleblock)$ 2 | $titleblock$ 3 | 4 | $endif$ 5 | $for(header-includes)$ 6 | $header-includes$ 7 | 8 | $endfor$ 9 | $for(include-before)$ 10 | $include-before$ 11 | 12 | $endfor$ 13 | $if(toc)$ 14 | $if(toc-title)$ 15 | #$toc-title$ 16 | $endif$ 17 | $toc$ 18 | 19 | $endif$ 20 | $body$ 21 | $for(include-after)$ 22 | 23 | $include-after$ 24 | $endfor$ 25 | -------------------------------------------------------------------------------- /DOCS/Release_FAQ/README.md: -------------------------------------------------------------------------------- 1 | # FAQ Pages 2 | 3 | * [CMAQv5.5-Series-FAQ](./CMAQv5.5-Series-FAQ.md): Frequently asked questions for upgrading to the latest CMAQ version 4 | * [CMAQv5.4-Series-FAQ](./CMAQv5.4-Series-FAQ.md): Frequently asked questions for upgrading from v5.3.3 to v5.4 5 | 6 | -------------------------------------------------------------------------------- /PYTOOLS/install/environment.yml: -------------------------------------------------------------------------------- 1 | # run: conda env create --file environment.yml 2 | name: cmaqpy 3 | channels: 4 | - conda-forge 5 | - defaults 6 | dependencies: 7 | - python >=3.6 8 | - anaconda 9 | - pip 10 | - jupyterlab 11 | - setuptools 12 | - importlib_metadata>=4.6 13 | - numpy>=1.19.5 14 | - pandas >= 1.1.5 15 | - netCDF4>=1.5.4 16 | - matplotlib>=3.3 17 | - pyproj>=2.6 18 | - cdo==1.9 19 | - pip: 20 | - pycno>=0.2.0 21 | - pseudonetcdf>=3.2.2 22 | - cdo==1.5.3 23 | -------------------------------------------------------------------------------- /UTIL/create_ebi/docs/README.txt: -------------------------------------------------------------------------------- 1 | # CMAQ.Create_EBI_Solver 2 | Data, runscript, and FORTRAN code that CMAQ v51 EBI Solver 3 | 4 | To create a new EBI solver: 5 | 6 | 1) Copy scripts/bldrun.create_ebi into its parent directory 7 | 8 | 2) Modify makefile.v50XX for the compilers and their flags on your 9 | computer platform, IF NECESSARY. 10 | 11 | 3) Change the copy of bldrun.create_ebi for your application. 12 | 13 | 3) Execute the script. Inputs and reference outputs are provided. 14 | 15 | To report potential program errors or EBI solver failures, contact Bill 16 | Hutzell/USEPA at hutzell.bill@epa.gov. 17 | -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Chemistry:-State-Air-Pollution-Research-Center-(SAPRC).md: -------------------------------------------------------------------------------- 1 | ### Removal of saprc07tic_ae6i_aq and saprc07tic_ae6i_aqkmti mechanisms 2 | 3 | [Golam Sarwar](sarwar.golam.email@epa.gov), U.S. Environmental Protection Agency 4 | 5 | **Type of update**: Model Clean-up 6 | 7 | **Release Version/Date**: CMAQv5.4 8 | 9 | **Description**: The saprc07tic_ae6i_aq and saprc07tic_ae6i_aqkmti mechanisms are no longer maintained and have been removed from the CMAQ code repository beginning with version 5.4. These mechanisms can still be accessed and run through previous CMAQ versions. 10 | 11 | -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Dry-Deposition-Air-Surface-Exchange.md: -------------------------------------------------------------------------------- 1 | # Dry Deposition Changes 2 | 3 | This page contains links to Wiki pages describing current and past changes to the Dry Deposition Air Surface Exchange Process in CMAQ. 4 | 5 | 6 | * [M3DRY](./CMAQ-Release-Notes:-Dry-Deposition-Air-Surface-Exchange:-M3DRY.md) 7 | * [Surface Tiled Aerosol and Gaseous Exchange (STAGE)](./CMAQ-Release-Notes:-Dry-Deposition-Air-Surface-Exchange:-Surface-Tiled-Aerosol-and-Gaseous-Exchange-(STAGE).md) 8 | * [Generalized Changes](./CMAQ-Release-Notes:-Dry-Deposition-Air-Surface-Exchange:-Generalized-Changes.md) 9 | 10 | 11 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/cracmm2/NR_cracmm2.nml: -------------------------------------------------------------------------------- 1 | &NR_nml 2 | 3 | NR_SPECIES_DATA = 4 | 5 | !SPECIES ,MOLWT ,IC ,IC_FAC ,BC ,BC_FAC ,DRYDEP SURR ,FAC ,WET-SCAV SURR ,FAC ,NR2AE SURR ,NR2AQ SURR,TRNS ,DDEP ,WDEP ,CONC ,!RepCmp,ExplicitorLumped,DTXSID,SMILES 6 | 'NH3' , 17.0 ,'' ,-1 ,'' ,-1 ,'VD_NH3' , 1 ,'NH3' , 1 ,'NH3' ,'NH3' ,'Yes' ,'Yes' ,'Yes' ,'Yes',!Ammonia,E,DTXSID0023872,N 7 | 'HCL' , 36.0 ,'' ,-1 ,'' ,-1 ,'VD_HCL' , 1 ,'HCL' , 1 ,'HCL' ,'HCL' ,'Yes' ,'Yes' ,'Yes' ,'Yes',!Hydrochloric acid,E,DTXSID2020711,Cl 8 | / 9 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/cracmm1_aq/NR_cracmm1_aq.nml: -------------------------------------------------------------------------------- 1 | &NR_nml 2 | 3 | NR_SPECIES_DATA = 4 | 5 | !SPECIES ,MOLWT ,IC ,IC_FAC ,BC ,BC_FAC ,DRYDEP SURR ,FAC ,WET-SCAV SURR ,FAC ,NR2AE SURR ,NR2AQ SURR,TRNS ,DDEP ,WDEP ,CONC ,!RepCmp,ExplicitorLumped,DTXSID,SMILES 6 | 'NH3' , 17.0 ,'' ,-1 ,'' ,-1 ,'VD_NH3' , 1 ,'NH3' , 1 ,'NH3' ,'NH3' ,'Yes' ,'Yes' ,'Yes' ,'Yes',!Ammonia,E,DTXSID0023872,N 7 | 'HCL' , 36.0 ,'' ,-1 ,'' ,-1 ,'VD_HCL' , 1 ,'HCL' , 1 ,'HCL' ,'HCL' ,'Yes' ,'Yes' ,'Yes' ,'Yes',!Hydrochloric acid,E,DTXSID2020711,Cl 8 | / 9 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HO2NO2_IUPAC04: -------------------------------------------------------------------------------- 1 | HO2NO2_IUPAC04 2 | ! HOONO2 + HV = products 3 | ! From IUPAC Subcommittee on Gas Kinetic Data Evaluation 4 | ! Data Sheet PNOx3_HO2NO2, updated 16th July 2001 5 | ! Website: http://www.iupac-kinetic.ch.cam.ac.uk/ 6 | Points (These are point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 280.0 9.300E-20 1.0 10 | 285.0 6.200E-20 1.0 11 | 290.0 3.900E-20 1.0 12 | 295.0 2.400E-20 1.0 13 | 300.0 1.400E-20 1.0 14 | 305.0 8.500E-21 1.0 15 | 310.0 5.300E-21 1.0 16 | 315.0 3.900E-21 1.0 17 | 320.0 2.400E-21 1.0 18 | 325.0 1.500E-21 1.0 19 | 330.0 9.000E-22 1.0 20 | 335.0 0.0 1.0 21 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BRO: -------------------------------------------------------------------------------- 1 | BRO 2 | ! BRO + HV = BR + O 3 | ! BRO Photolysis data 4 | ! Supplied by Brett Gantt 5 | ! Created from IUPAC dataset 3-Mar-2014 10:00 6 | Points (These data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 302.0 2.000E-18 1.000 10 | 307.0 2.590E-18 1.000 11 | 312.0 4.540E-18 1.000 12 | 317.0 3.910E-18 1.000 13 | 322.0 6.000E-18 1.000 14 | 327.0 7.530E-18 1.000 15 | 332.0 6.280E-18 1.000 16 | 337.0 5.890E-18 1.000 17 | 342.0 5.150E-18 1.000 18 | 347.0 3.990E-18 1.000 19 | 352.0 2.280E-18 1.000 20 | 357.0 1.720E-18 1.000 21 | 362.0 1.610E-18 1.000 22 | 367.0 9.200E-19 1.000 23 | 372.0 5.100E-19 1.000 24 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BRO_IUPAC2014: -------------------------------------------------------------------------------- 1 | BRO 2 | ! BRO + HV = BR + O 3 | ! BRO Photolysis data 4 | ! Supplied by Brett Gantt 5 | ! Created from IUPAC dataset 3-Mar-2014 10:00 6 | Points (These data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 302.0 2.000E-18 1.000 10 | 307.0 2.590E-18 1.000 11 | 312.0 4.540E-18 1.000 12 | 317.0 3.910E-18 1.000 13 | 322.0 6.000E-18 1.000 14 | 327.0 7.530E-18 1.000 15 | 332.0 6.280E-18 1.000 16 | 337.0 5.890E-18 1.000 17 | 342.0 5.150E-18 1.000 18 | 347.0 3.990E-18 1.000 19 | 352.0 2.280E-18 1.000 20 | 357.0 1.720E-18 1.000 21 | 362.0 1.610E-18 1.000 22 | 367.0 9.200E-19 1.000 23 | 372.0 5.100E-19 1.000 24 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BRO_IUPAC14: -------------------------------------------------------------------------------- 1 | BRO_IUPAC14 2 | ! BRO + HV = BR + O 3 | ! BRO Photolysis data 4 | ! Supplied by Brett Gantt 5 | ! Created from IUPAC dataset 3-Mar-2014 10:00 6 | Points (These data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 302.0 2.000E-18 1.000 10 | 307.0 2.590E-18 1.000 11 | 312.0 4.540E-18 1.000 12 | 317.0 3.910E-18 1.000 13 | 322.0 6.000E-18 1.000 14 | 327.0 7.530E-18 1.000 15 | 332.0 6.280E-18 1.000 16 | 337.0 5.890E-18 1.000 17 | 342.0 5.150E-18 1.000 18 | 347.0 3.990E-18 1.000 19 | 352.0 2.280E-18 1.000 20 | 357.0 1.720E-18 1.000 21 | 362.0 1.610E-18 1.000 22 | 367.0 9.200E-19 1.000 23 | 372.0 5.100E-19 1.000 24 | -------------------------------------------------------------------------------- /CCTM/src/ICL/fixed/emctrl/EMISPRM.EXT: -------------------------------------------------------------------------------- 1 | 2 | C....................................................................... 3 | C Include File EMISPRM.EXT 4 | 5 | C Contains: Gas chemistry emissions processing control parameters 6 | 7 | C Revision History: initial 8 | C 3 Apr 09 J.Young: replace EMISPRM.vdif.EXT, EMISPRM.chem.EXT include 9 | C files with simpler implementation 10 | C....................................................................... 11 | 12 | LOGICAL, SAVE :: EMISVD ! gas chem emis processing in vert. diff 13 | INTEGER, SAVE :: NEMIS ! no. of gas chem emis species for vdiff 14 | 15 | C....................................................................... 16 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BRO_IUPAC10: -------------------------------------------------------------------------------- 1 | BRO_IUPAC10 2 | ! BRO + HV = BR + O 3 | ! BRO Photolysis data (QY from Parrella et al., 2012) 4 | ! Supplied by Brett Gantt 5 | ! Created from IUPAC dataset 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 302.0 2.000E-18 1.000 10 | 307.0 2.590E-18 1.000 11 | 312.0 4.540E-18 1.000 12 | 317.0 3.910E-18 1.000 13 | 322.0 6.000E-18 1.000 14 | 327.0 7.530E-18 1.000 15 | 332.0 6.280E-18 1.000 16 | 337.0 5.890E-18 1.000 17 | 342.0 5.150E-18 1.000 18 | 347.0 3.990E-18 1.000 19 | 352.0 2.280E-18 1.000 20 | 357.0 1.720E-18 1.000 21 | 362.0 1.610E-18 1.000 22 | 367.0 9.200E-19 1.000 23 | 372.0 5.100E-19 1.000 24 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/cb6r5m_ae7_aq/pa_cb6r5m_ae7_aq.ctl: -------------------------------------------------------------------------------- 1 | ! for CB6_cl2 2 | ! 3 | !======================================================================= 4 | ! IPR_OUTPUTS 5 | !======================================================================= 6 | IPR_OUTPUT O3 = CHEM+DDEP+CLDS+AERO+TRNM; 7 | IPR_OUTPUT HNO3 = CHEM+DDEP+CLDS+AERO; 8 | IPR_OUTPUT PAN = CHEM+DDEP+CLDS+AERO+TRNM; 9 | IPR_OUTPUT N2O5 = CHEM+DDEP+CLDS+AERO; 10 | 11 | DEFINE FAMILY EC = AECI + AECJ; 12 | IPR_OUTPUT EC = COAG + EMIS + HADV; 13 | IPR_OUTPUT ASO4J = COND + COAG + EMIS + CHEM + VDIF + CLDS; 14 | IPR_OUTPUT ASO4I = NPF + COND + COAG + EMIS + CHEM + VDIF +CLDS; 15 | IPR_OUTPUT NUMATKN; 16 | !IPR_OUTPUT NUMACC; 17 | !IPR_OUTPUT NUMCOR; 18 | ! 19 | ENDPA; 20 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/racm2_ae6_aq/pa_racm2_ae6_aq.ctl: -------------------------------------------------------------------------------- 1 | ! for racm2_ae6_aq 2 | ! 3 | !======================================================================= 4 | ! IPR_OUTPUTS 5 | !======================================================================= 6 | IPR_OUTPUT O3 = CHEM+DDEP+CLDS+AERO+TRNM; 7 | IPR_OUTPUT HNO3 = CHEM+DDEP+CLDS+AERO; 8 | IPR_OUTPUT PAN = CHEM+DDEP+CLDS+AERO+TRNM; 9 | IPR_OUTPUT N2O5 = CHEM+DDEP+CLDS+AERO; 10 | 11 | DEFINE FAMILY EC = AECI + AECJ; 12 | IPR_OUTPUT EC = COAG + EMIS + HADV; 13 | IPR_OUTPUT ASO4J = COND + COAG + EMIS + CHEM + VDIF + CLDS; 14 | IPR_OUTPUT ASO4I = NPF + COND + COAG + EMIS + CHEM + VDIF +CLDS; 15 | IPR_OUTPUT NUMATKN; 16 | !IPR_OUTPUT NUMACC; 17 | !IPR_OUTPUT NUMCOR; 18 | ! 19 | ENDPA; 20 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tc_ae6_aq/pa_saprc07tc_ae6_aq.ctl: -------------------------------------------------------------------------------- 1 | ! for saprc07tc_ae6_aq 2 | ! 3 | !======================================================================= 4 | ! IPR_OUTPUTS 5 | !======================================================================= 6 | IPR_OUTPUT O3 = CHEM+DDEP+CLDS+AERO+TRNM; 7 | IPR_OUTPUT HNO3 = CHEM+DDEP+CLDS+AERO; 8 | IPR_OUTPUT PAN = CHEM+DDEP+CLDS+AERO+TRNM; 9 | IPR_OUTPUT N2O5 = CHEM+DDEP+CLDS+AERO; 10 | 11 | DEFINE FAMILY EC = AECI + AECJ; 12 | IPR_OUTPUT EC = COAG + EMIS + HADV; 13 | IPR_OUTPUT ASO4J = COND + COAG + EMIS + CHEM + VDIF + CLDS; 14 | IPR_OUTPUT ASO4I = NPF + COND + COAG + EMIS + CHEM + VDIF +CLDS; 15 | IPR_OUTPUT NUMATKN; 16 | !IPR_OUTPUT NUMACC; 17 | !IPR_OUTPUT NUMCOR; 18 | ! 19 | ENDPA; 20 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/saprc07tic_ae7i_aq/pa_saprc07tic_ae7i_aq.ctl: -------------------------------------------------------------------------------- 1 | ! for saprc07tic_ae7i_aq 2 | ! 3 | !======================================================================= 4 | ! IPR_OUTPUTS 5 | !======================================================================= 6 | IPR_OUTPUT O3 = CHEM+DDEP+CLDS+AERO+TRNM; 7 | IPR_OUTPUT HNO3 = CHEM+DDEP+CLDS+AERO; 8 | IPR_OUTPUT PAN = CHEM+DDEP+CLDS+AERO+TRNM; 9 | IPR_OUTPUT N2O5 = CHEM+DDEP+CLDS+AERO; 10 | 11 | DEFINE FAMILY EC = AECI + AECJ; 12 | IPR_OUTPUT EC = COAG + EMIS + HADV; 13 | IPR_OUTPUT ASO4J = COND + COAG + EMIS + CHEM + VDIF + CLDS; 14 | IPR_OUTPUT ASO4I = NPF + COND + COAG + EMIS + CHEM + VDIF +CLDS; 15 | IPR_OUTPUT NUMATKN; 16 | !IPR_OUTPUT NUMACC; 17 | !IPR_OUTPUT NUMCOR; 18 | ! 19 | ENDPA; 20 | -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Emissions-Updates:-Lightning-Emissions.md: -------------------------------------------------------------------------------- 1 | ### Lightning Emissions 2 | [Daiwen Kang](mailto:kang.daiwen@epa.gov), U.S. Environmental Protection Agency 3 | **Type of update**: Bug Fix 4 | **Release Version/Date**: CMAQv5.4 5 | **Description**: 6 | The time steps in the lightning NOx diagnostic files were from 1 t0 24 in the previous versions. For CMAQv5.4, the time steps for the diagnostic files are from 0 to 23 in agreement with other output files. 7 | **Significance and Impact**: No impact on results. 8 | 9 | |Merge Commit | Internal record| 10 | |:------:|:-------:| 11 | |[Merge for PR#819](https://github.com/USEPA/CMAQ/commit/a3626ee9e8b60f9b0526d942f4fd44a4e9db0fc5) | [PR#819](https://github.com/USEPA/CMAQ_Dev/pull/819) | 12 | -------------------------------------------------------------------------------- /UTIL/chemmech/docs/readme.txt: -------------------------------------------------------------------------------- 1 | # CMAQ.mech_processor 2 | FORTRAN and c code that creates the RXNS modules for the CMAQ model version 5.1 3 | 4 | This repository contains the template bldrun script under script and code 5 | directory to generates the RXNS_DATA_MODULE.F90 and RXNS_FUNC_MODULE.F90 files 6 | for CMAQ version 5.2. 7 | 8 | To use this tool: 9 | 1) Compile the tool by modifying the Makefile in the src directory. The changes 10 | set fortran compiler(s), cc compiler(s), their compilation and link flags based 11 | on your system, IF NEEDED. 12 | 13 | 2) Next, copy modify the bldrun template into its parent direcory. 14 | 15 | 3) Modify the template for your own application. 16 | 17 | 3) Execute the runscript and inspect the results under the output directory. 18 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NTR_IUPAC04: -------------------------------------------------------------------------------- 1 | NTR_IUPAC04 2 | !i-C3H7ONO2 + HV = iC3H7O + NO2 3 | ! From IUPAC Subcommittee on Gas Kinetic Data Evaluation 4 | ! Data Sheet P17_i-C3H7ONO2+hv, updated 16th July 2001 5 | ! Website: http://www.iupac-kinetic.ch.cam.ac.uk/ 6 | Points (! These are point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 280.0 2.800E-20 1.0 10 | 285.0 2.200E-20 1.0 11 | 290.0 1.600E-20 1.0 12 | 295.0 1.200E-20 1.0 13 | 300.0 7.800E-21 1.0 14 | 305.0 5.000E-21 1.0 15 | 310.0 2.900E-21 1.0 16 | 315.0 1.700E-21 1.0 17 | 320.0 8.500E-22 1.0 18 | 325.0 4.400E-22 1.0 19 | 330.0 2.200E-22 1.0 20 | 335.0 1.100E-22 1.0 21 | 340.0 5.300E-23 1.0 22 | 345.0 1.800E-23 1.0 23 | 350.0 8.000E-24 1.0 24 | 355.0 2.900E-24 1.0 25 | 360.0 1.800E-24 1.0 26 | 365.0 0.0 1.0 27 | -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Instrumented-Models.md: -------------------------------------------------------------------------------- 1 | # Instrumented Models 2 | 3 | This page contains links to Wiki pages describing current and past changes to CMAQ Instrumented Models. 4 | 5 | * [CMAQ-ISAM](./CMAQ-Release-Notes:-Instrumented-Models:-CMAQ-ISAM.md): The Integrated Source Apportionment Method (ISAM) calculates source attribution information for user specified ozone and particulate matter precursors within the CMAQ model. For more information about this method see [Chapter 11](../Users_Guide/CMAQ_UG_ch11_ISAM.md). 6 | * [CMAQ-DDM3D](./CMAQ-Release-Notes:-Instrumented-Models:-CMAQ-DDM3D.md): The Decoupled Direct Method in Three Dimensions (DDM-3D) provides CMAQ concentration and deposition sensitivity information for user specified model parameters. For more information about this method see [Chapter 10](../Users_Guide/CMAQ_UG_ch10_HDDM-3D.md). 7 | 8 | 9 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/PROPANAL_IUPAC: -------------------------------------------------------------------------------- 1 | PROPANAL_IUPAC 2 | !Propionaldehyde + HV = C2H5. + CHO. 3 | ! From IUPAC Subcommittee on Gas Kinetic Data Evaluation 4 | ! Data Sheet Propiopnaldehyde+hv, updated 17th Feb 2005 5 | ! Website: http://www.iupac-kinetic.ch.cam.ac.uk/ 6 | ! IUPAC did not recommend quantum yields, values taken from 7 | ! Jaoui and Kamens (2003), Atm. Env., vol 37(13), 1835-1851. 8 | Points (!These are point values) 9 | ! With FAC, units are (cm^2/molecule) 10 | FAC=1.0 11 | 277.5 1.22E-19 0.4000 12 | 282.5 1.30E-19 0.4000 13 | 287.5 1.35E-19 0.4000 14 | 292.5 1.29E-19 0.4000 15 | 297.5 1.22E-19 0.4000 16 | 302.5 1.06E-19 0.4000 17 | 307.5 8.94E-20 0.4000 18 | 312.5 6.84E-20 0.4000 19 | 317.5 4.90E-20 0.4000 20 | 322.5 3.07E-20 0.4000 21 | 327.5 1.72E-20 0.4000 22 | 332.5 0.72E-20 0.4000 23 | 337.5 0.29E-20 0.4000 24 | 342.5 0.08E-20 0.4000 25 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/PROPANAL_IUPAC_1st_try: -------------------------------------------------------------------------------- 1 | PROPANAL_IUPAC 2 | !Propionaldehyde + HV = C2H5. + CHO. 3 | ! From IUPAC Subcommittee on Gas Kinetic Data Evaluation 4 | ! Data Sheet Propiopnaldehyde+hv, updated 17th Feb 2005 5 | ! Website: http://www.iupac-kinetic.ch.cam.ac.uk/ 6 | ! IUPAC did not recommend quantum yields, values taken from 7 | ! Jaoui and Kamens (2003), Atm. Env., vol 37(13), 1835-1851. 8 | Points (!These are point values) 9 | ! With FAC, units are (cm^2/molecule) 10 | FAC=1.0 11 | 277.5 1.22E-19 0.4000 12 | 282.5 1.30E-19 0.4000 13 | 287.5 1.35E-19 0.4000 14 | 292.5 1.29E-19 0.4000 15 | 297.5 1.22E-19 0.4000 16 | 302.5 1.06E-19 0.4000 17 | 307.5 8.94E-20 0.4000 18 | 312.5 6.84E-20 0.4000 19 | 317.5 4.90E-20 0.4000 20 | 322.5 3.07E-20 0.4000 21 | 327.5 1.72E-20 0.4000 22 | 332.5 0.72E-20 0.4000 23 | 337.5 0.29E-20 0.4000 24 | 342.5 0.08E-20 0.4000 25 | -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- 1 | **Contact:** 2 | Developers name and affiliation 3 | 4 | **Type of code change:** 5 | For example, bug fix, enhancement, new feature, documentation. 6 | 7 | **Description of changes:** 8 | Clear and concise description of the problem, solution, and required changes. 9 | 10 | **Issue:** 11 | If this resolves a known issue, include the link to the GitHub Issue number. 12 | 13 | **Summary of Impact:** 14 | Please state whether this update changes the results of the core model predictions in terms of concentration, deposition, etc. 15 | Please state the approximate impact this update has on model runtime, if any. 16 | 17 | **Tests conducted:** 18 | Describe tests that were conducted including domain and time period (e.g. BLDCHECK; June 1-2 2016 SEBENCH; Jan 2017 12US1) and results of the tests. Include plots of relevant results. 19 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/INO_06: -------------------------------------------------------------------------------- 1 | INO_06 2 | ! INO + HV = I + NO 3 | ! INO Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from NASA/JPL dataset 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 223.0 2.250E-18 1.000 10 | 230.0 1.690E-17 1.000 11 | 235.0 5.640E-17 1.000 12 | 238.0 6.850E-17 1.000 13 | 245.0 6.000E-17 1.000 14 | 251.0 4.880E-17 1.000 15 | 260.0 2.270E-17 1.000 16 | 270.0 1.040E-17 1.000 17 | 280.0 5.000E-18 1.000 18 | 290.0 1.870E-18 1.000 19 | 300.0 9.200E-19 1.000 20 | 310.0 4.100E-19 1.000 21 | 360.0 4.500E-19 1.000 22 | 370.0 5.900E-19 1.000 23 | 380.0 6.500E-19 1.000 24 | 390.0 7.800E-19 1.000 25 | 400.0 9.200E-19 1.000 26 | 410.0 1.100E-18 1.000 27 | 420.0 1.000E-18 1.000 28 | 430.0 9.400E-19 1.000 29 | 440.0 8.000E-19 1.000 30 | 450.0 6.000E-19 1.000 31 | 460.0 4.000E-19 1.000 -------------------------------------------------------------------------------- /DOCS/Users_Guide/Appendix/README.md: -------------------------------------------------------------------------------- 1 | # User's Guide Appendix 2 | 3 | - [Appendix A](./CMAQ_UG_appendixA_model_options.md) : List of model options in configuration, compilation and run scripts 4 | - [Appendix B](./CMAQ_UG_appendixB_emissions_control.md) : How to use the Emissions Control Namelist for customization of emissions processing. 5 | - [Appendix C](./CMAQ_UG_appendixC_spatial_data.md) : Information on how to create consistent geospatial data for CMAQ inputs. 6 | - [Appendix D](./CMAQ_UG_appendixD_parallel_implementation.md) : An introduction to how data-parallelism can be applied in the CMAQ system to increase computational efficiency. 7 | - [Appendix E](./CMAQ_UG_appendixE_configuring_WRF.md) : Configuring the Weather Research and Forecasting Model (WRF) for use with CMAQ. 8 | - [Appendix F](./CMAQ_UG_appendixF_elmo_outputs.md) : Description of the Explicit and Lumped CMAQ Model Output Module 9 | -------------------------------------------------------------------------------- /DOCS/Users_Guide/filter/comments.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | from pandocfilters import toJSONFilter 3 | import re 4 | 5 | """ 6 | Pandoc filter that causes everything between 7 | '' and '' 8 | to be ignored. The comment lines must appear on 9 | lines by themselves, with blank lines surrounding 10 | them. 11 | """ 12 | 13 | incomment = False 14 | 15 | 16 | def comment(k, v, fmt, meta): 17 | global incomment 18 | if k == 'RawBlock': 19 | fmt, s = v 20 | if fmt == "html": 21 | if re.search("", s): 22 | incomment = True 23 | return [] 24 | elif re.search("", s): 25 | incomment = False 26 | return [] 27 | if incomment: 28 | return [] # suppress anything in a comment 29 | 30 | if __name__ == "__main__": 31 | toJSONFilter(comment) 32 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MB2C: -------------------------------------------------------------------------------- 1 | MB2C 2 | ! CHBR2CL + HV = 2BR 3 | ! CHBR2CL Photolysis data. 4 | ! Supplied by Brett Gantt 5 | ! Created from Bilde et al. J Phys Chem A 1998 (Figure 11 at 298K) 6 | Points (These data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 200.0 3.000E-18 1.000 10 | 205.0 3.500E-18 1.000 11 | 210.0 4.000E-18 1.000 12 | 215.0 3.000E-18 1.000 13 | 220.0 2.000E-18 1.000 14 | 225.0 1.750E-18 1.000 15 | 230.0 1.500E-18 1.000 16 | 235.0 1.250E-18 1.000 17 | 240.0 1.100E-18 1.000 18 | 245.0 1.000E-18 1.000 19 | 250.0 9.000E-19 1.000 20 | 255.0 6.500E-19 1.000 21 | 260.0 4.000E-19 1.000 22 | 265.0 2.500E-19 1.000 23 | 270.0 1.250E-19 1.000 24 | 275.0 8.000E-20 1.000 25 | 280.0 4.000E-20 1.000 26 | 285.0 2.500E-20 1.000 27 | 290.0 1.000E-20 1.000 28 | 295.0 6.500E-21 1.000 29 | 300.0 3.000E-21 1.000 30 | 305.0 1.500E-21 1.000 31 | 310.0 8.000E-22 1.000 32 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MBC2: -------------------------------------------------------------------------------- 1 | MBC2 2 | ! CHBRCL2 + HV = BR 3 | ! CHBRCL2 Photolysis data. 4 | ! Supplied by Brett Gantt 5 | ! Created from Bilde et al. J Phys Chem A 1998 (Figure 9 at 298K) 6 | Points (the mechanism was evaluated assuming this format) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 210.0 7.000E-19 1.000 10 | 215.0 7.250E-19 1.000 11 | 220.0 7.500E-19 1.000 12 | 225.0 6.500E-19 1.000 13 | 230.0 6.000E-19 1.000 14 | 235.0 5.000E-19 1.000 15 | 240.0 4.000E-19 1.000 16 | 245.0 3.250E-19 1.000 17 | 250.0 2.500E-19 1.000 18 | 255.0 1.750E-19 1.000 19 | 260.0 9.000E-20 1.000 20 | 265.0 6.000E-20 1.000 21 | 270.0 3.000E-20 1.000 22 | 275.0 1.500E-20 1.000 23 | 280.0 9.000E-21 1.000 24 | 285.0 6.000E-21 1.000 25 | 290.0 4.500E-21 1.000 26 | 295.0 3.000E-21 1.000 27 | 300.0 1.500E-21 1.000 28 | 305.0 9.000E-22 1.000 29 | 310.0 6.500E-22 1.000 30 | 315.0 4.000E-22 1.000 31 | 320.0 1.750E-22 1.000 32 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MB2C_BLIDE98: -------------------------------------------------------------------------------- 1 | MB2C_BLIDE98 2 | ! CHBR2CL + HV = 2BR 3 | ! CHBR2CL Photolysis data. 4 | ! Supplied by Brett Gantt 5 | ! Created from Bilde et al. J Phys Chem A 1998 (Figure 11 at 298K) 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 200.0 3.000E-18 1.000 10 | 205.0 3.500E-18 1.000 11 | 210.0 4.000E-18 1.000 12 | 215.0 3.000E-18 1.000 13 | 220.0 2.000E-18 1.000 14 | 225.0 1.750E-18 1.000 15 | 230.0 1.500E-18 1.000 16 | 235.0 1.250E-18 1.000 17 | 240.0 1.100E-18 1.000 18 | 245.0 1.000E-18 1.000 19 | 250.0 9.000E-19 1.000 20 | 255.0 6.500E-19 1.000 21 | 260.0 4.000E-19 1.000 22 | 265.0 2.500E-19 1.000 23 | 270.0 1.250E-19 1.000 24 | 275.0 8.000E-20 1.000 25 | 280.0 4.000E-20 1.000 26 | 285.0 2.500E-20 1.000 27 | 290.0 1.000E-20 1.000 28 | 295.0 6.500E-21 1.000 29 | 300.0 3.000E-21 1.000 30 | 305.0 1.500E-21 1.000 31 | 310.0 8.000E-22 1.000 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MBC2_BLIDE98: -------------------------------------------------------------------------------- 1 | MBC2_BLIDE98 2 | ! CHBRCL2 + HV = BR 3 | ! CHBRCL2 Photolysis data 4 | ! Supplied by Brett Gantt 5 | ! Created from Bilde et al. J Phys Chem A 1998 (Figure 9 at 298K) 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 210.0 7.000E-19 1.000 10 | 215.0 7.250E-19 1.000 11 | 220.0 7.500E-19 1.000 12 | 225.0 6.500E-19 1.000 13 | 230.0 6.000E-19 1.000 14 | 235.0 5.000E-19 1.000 15 | 240.0 4.000E-19 1.000 16 | 245.0 3.250E-19 1.000 17 | 250.0 2.500E-19 1.000 18 | 255.0 1.750E-19 1.000 19 | 260.0 9.000E-20 1.000 20 | 265.0 6.000E-20 1.000 21 | 270.0 3.000E-20 1.000 22 | 275.0 1.500E-20 1.000 23 | 280.0 9.000E-21 1.000 24 | 285.0 6.000E-21 1.000 25 | 290.0 4.500E-21 1.000 26 | 295.0 3.000E-21 1.000 27 | 300.0 1.500E-21 1.000 28 | 305.0 9.000E-22 1.000 29 | 310.0 6.500E-22 1.000 30 | 315.0 4.000E-22 1.000 31 | 320.0 1.750E-22 1.000 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NTR_IUPAC10: -------------------------------------------------------------------------------- 1 | NTR_IUPAC10 2 | ! j(NTR) IUPAC(2010) i-C3H7ONO2 3 | ! NTR = NO2 + XO2H + RO2 4 | ! From IUPAC Subcommittee on Gas Kinetic Data Evaluation 5 | ! Data Sheet P17, updated 16th May, 2002 6 | ! These are point values 7 | Begining (the mechanism evaluated with this format) 8 | !WL(nm) XSEC(cm2) QY 9 | FAC=1.0 10 | 280.0 2.800E-20 1.000 11 | 285.0 2.200E-20 1.000 12 | 290.0 1.600E-20 1.000 13 | 295.0 1.200E-20 1.000 14 | 300.0 7.800E-21 1.000 15 | 305.0 5.000E-21 1.000 16 | 310.0 2.900E-21 1.000 17 | 315.0 1.700E-21 1.000 18 | 320.0 8.500E-22 1.000 19 | 325.0 4.400E-22 1.000 20 | 330.0 2.200E-22 1.000 21 | 335.0 1.100E-22 1.000 22 | 340.0 5.300E-23 1.000 23 | 345.0 1.800E-23 1.000 24 | 350.0 8.000E-24 1.000 25 | 355.0 2.900E-24 1.000 26 | 360.0 1.800E-24 1.000 27 | 361.0 0.000E+00 1.000 28 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CHBR2CL_BILDE1998: -------------------------------------------------------------------------------- 1 | MB2C 2 | ! CHBR2CL + HV = 2BR 3 | ! CHBR2CL Photolysis data. 4 | ! Supplied by Brett Gantt 5 | ! Created from Bilde et al. J Phys Chem A 1998 (Figure 11 at 298K) 6 | Points (These data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 200.0 3.000E-18 1.000 10 | 205.0 3.500E-18 1.000 11 | 210.0 4.000E-18 1.000 12 | 215.0 3.000E-18 1.000 13 | 220.0 2.000E-18 1.000 14 | 225.0 1.750E-18 1.000 15 | 230.0 1.500E-18 1.000 16 | 235.0 1.250E-18 1.000 17 | 240.0 1.100E-18 1.000 18 | 245.0 1.000E-18 1.000 19 | 250.0 9.000E-19 1.000 20 | 255.0 6.500E-19 1.000 21 | 260.0 4.000E-19 1.000 22 | 265.0 2.500E-19 1.000 23 | 270.0 1.250E-19 1.000 24 | 275.0 8.000E-20 1.000 25 | 280.0 4.000E-20 1.000 26 | 285.0 2.500E-20 1.000 27 | 290.0 1.000E-20 1.000 28 | 295.0 6.500E-21 1.000 29 | 300.0 3.000E-21 1.000 30 | 305.0 1.500E-21 1.000 31 | 310.0 8.000E-22 1.000 32 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/ISOPNB_RACM2: -------------------------------------------------------------------------------- 1 | ISOPNB_RACM2 2 | ! ISOPNB + hv = ISOP + NO2: j(Pj_sopnb) ; 3 | ! j(Pj_onitoh3) ~ MCMv3.3.1 tert-butyl nitrate (t-C4H9ONO2) : J<55>, FAC=0.333 4 | ! Absorption x-section taken from Roberts and Fajer (1989) 5 | ! Quantum Yield (φ) = 1.00 6 | ! Made by Azimeh Zare Jul2016 7 | ! at mech.def file: cross sections should be divided by 3 due to the hydroxy group 8 | !(Browne et al., 2014 and Robeerts and Fajer (1989)) 9 | !Absorption cross-sections at 298 K 10 | Points 11 | ! With FAC, units are (cm^2/molecule) 12 | FAC=1 13 | 270.0 4.300E-20 1.000 14 | 275.0 4.000E-20 1.000 15 | 280.0 3.700E-20 1.000 16 | 285.0 3.100E-20 1.000 17 | 290.0 2.600E-20 1.000 18 | 295.0 2.000E-20 1.000 19 | 300.0 1.500E-20 1.000 20 | 305.0 1.000E-20 1.000 21 | 310.0 7.000E-21 1.000 22 | 315.0 4.500E-21 1.000 23 | 320.0 2.700E-21 1.000 24 | 325.0 1.500E-21 1.000 25 | 330.0 8.600E-22 1.000 26 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NITROXY_BUTA_2014: -------------------------------------------------------------------------------- 1 | NBO_14 2 | !3-nitrooxy-2-butanone photolysis cross sections (298 K) 3 | !http://www.atmosphere.mpg.de/enid/2295 4 | !1. I. Barnes, K.H. Becker, and T. Zhu 5 | !J. Atmos. Chem. 17, 353-373 (1993). 6 | ! quantum yields = 1 as per Muller (ACP, 14, 2497-2508, 2014) and Suarez-Bertoa 7 | ! ES&T, 46, 12502-12509 (2012) 8 | ! 9 | Points (the mechanism evaluated with this format) 10 | ! With FAC, units are (cm^2/molecule) 11 | FAC=1.0 12 | 245 2.934e-19 1.0 13 | 250 2.114e-19 1.0 14 | 255 1.644e-19 1.0 15 | 260 1.424e-19 1.0 16 | 265 1.332e-19 1.0 17 | 270 1.298e-19 1.0 18 | 275 1.273e-19 1.0 19 | 280 1.229e-19 1.0 20 | 285 1.155e-19 1.0 21 | 290 1.036e-19 1.0 22 | 295 9.110e-20 1.0 23 | 300 7.360e-20 1.0 24 | 305 5.850e-20 1.0 25 | 310 4.180e-20 1.0 26 | 315 2.820e-20 1.0 27 | 320 1.850e-20 1.0 28 | 325 1.070e-20 1.0 29 | 330 6.800e-21 1.0 30 | 335 4.900e-21 1.0 31 | 340 4.400e-21 1.0 32 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CHBRCL2_BILDE1998: -------------------------------------------------------------------------------- 1 | MBC2 2 | ! CHBRCL2 + HV = BR 3 | ! CHBRCL2 Photolysis data. 4 | ! Supplied by Brett Gantt 5 | ! Created from Bilde et al. J Phys Chem A 1998 (Figure 9 at 298K) 6 | Points (the mechanism was evaluated assuming this format) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 210.0 7.000E-19 1.000 10 | 215.0 7.250E-19 1.000 11 | 220.0 7.500E-19 1.000 12 | 225.0 6.500E-19 1.000 13 | 230.0 6.000E-19 1.000 14 | 235.0 5.000E-19 1.000 15 | 240.0 4.000E-19 1.000 16 | 245.0 3.250E-19 1.000 17 | 250.0 2.500E-19 1.000 18 | 255.0 1.750E-19 1.000 19 | 260.0 9.000E-20 1.000 20 | 265.0 6.000E-20 1.000 21 | 270.0 3.000E-20 1.000 22 | 275.0 1.500E-20 1.000 23 | 280.0 9.000E-21 1.000 24 | 285.0 6.000E-21 1.000 25 | 290.0 4.500E-21 1.000 26 | 295.0 3.000E-21 1.000 27 | 300.0 1.500E-21 1.000 28 | 305.0 9.000E-22 1.000 29 | 310.0 6.500E-22 1.000 30 | 315.0 4.000E-22 1.000 31 | 320.0 1.750E-22 1.000 32 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/O2_RADM88: -------------------------------------------------------------------------------- 1 | O2_RADM88 2 | ! Molecular Oxygen photolysis (O2) 3 | ! O2 + hv -> O + O 4 | ! Taken from the RADM input file; from WMO (1988) report 5 | ! format: wl, abs_cs, qy 6 | Beginning 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0E-24 9 | 185.185 7.04 1.0 10 | 186.916 7.36 1.0 11 | 188.679 7.64 1.0 12 | 190.476 7.87 1.0 13 | 192.308 8.04 1.0 14 | 194.175 8.14 1.0 15 | 196.078 8.17 1.0 16 | 198.020 8.13 1.0 17 | 200.000 8.01 1.0 18 | 202.020 7.84 1.0 19 | 204.082 7.63 1.0 20 | 206.186 7.33 1.0 21 | 208.333 6.99 1.0 22 | 210.526 6.45 1.0 23 | 212.766 5.81 1.0 24 | 215.054 5.23 1.0 25 | 217.391 4.71 1.0 26 | 219.780 4.26 1.0 27 | 222.222 3.80 1.0 28 | 224.719 3.35 1.0 29 | 227.273 2.90 1.0 30 | 229.885 2.45 1.0 31 | 232.558 2.05 1.0 32 | 235.294 1.69 1.0 33 | 238.095 1.30 1.0 34 | 240.964 0.93 1.0 35 | 243.902 0.00 1.0 36 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/IO_IUPAC10: -------------------------------------------------------------------------------- 1 | IO_IUPAC10 2 | ! IO + HV = I + O 3 | ! IO Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset PI3 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 345.0 7.800E-19 1.000 10 | 350.0 1.000E-18 1.000 11 | 355.0 1.360E-18 1.000 12 | 360.0 1.850E-18 1.000 13 | 365.0 2.250E-18 1.000 14 | 370.0 2.990E-18 1.000 15 | 375.0 3.570E-18 1.000 16 | 380.0 4.420E-18 1.000 17 | 385.0 4.630E-18 1.000 18 | 390.0 5.650E-18 1.000 19 | 395.0 6.550E-18 1.000 20 | 400.0 6.407E-18 1.000 21 | 405.0 7.090E-18 1.000 22 | 410.0 7.530E-18 1.000 23 | 415.0 5.180E-18 1.000 24 | 420.0 9.040E-18 1.000 25 | 425.0 4.170E-18 1.000 26 | 430.0 6.110E-18 1.000 27 | 435.0 6.920E-18 1.000 28 | 440.0 1.610E-18 1.000 29 | 445.0 4.940E-18 1.000 30 | 450.0 1.020E-18 1.000 31 | 455.0 2.360E-18 1.000 32 | 460.0 9.000E-19 1.000 33 | 465.0 3.900E-19 1.000 34 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/C2CHO_R_MCMv32: -------------------------------------------------------------------------------- 1 | C2CHO_R_MCMv32 2 | !C2H5CHO:Propionaldehyde (298K and 1 bar) photolysis quantum yields (C2H5 + HCO) 3 | !C2H5CHO --> C2H5 + HCO 4 | !Chen and Zhu J. (2001). The Wavelength Dependence of the Photodissociation of Propionaldehyde in the 5 | !280-330 nm Region, Phys. Chem. A., 105, 9689-9696. 6 | ! 7 | !Cross-Section recommended by IUPAC 2002 that gives no preferred quantum yields 8 | !http://iupac.pole-ether.fr/htdocs/datasheets/pdf/P3_C2H5CHO+hv.pdf 9 | ! 10 | ! 11 | !J14 in MCM v3.2:C2H5CHO-> C2H5 + HCO 12 | !wvl(nm) XC(cm^2) qy_hco 13 | Points 14 | ! With FAC, units are (cm^2/molecule) 15 | FAC=1.0 16 | 280.0 5.16E-20 0.850 17 | 285.0 5.86E-20 1.000 18 | 290.0 5.56E-20 0.950 19 | 295.0 5.57E-20 0.980 20 | 300.0 5.04E-20 0.920 21 | 305.0 4.32E-20 0.950 22 | 310.0 3.60E-20 0.980 23 | 315.0 2.77E-20 0.910 24 | 320.0 1.83E-20 1.000 25 | 325.0 1.30E-20 1.000 26 | 330.0 5.75E-21 0.840 27 | 335.0 3.25E-21 0.000 28 | -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/new-issue-.md: -------------------------------------------------------------------------------- 1 | --- 2 | name: 'New Issue ' 3 | about: Create a report to help us improve 4 | title: '' 5 | labels: '' 6 | assignees: '' 7 | 8 | --- 9 | **Please Read** 10 | If you have questions or problems with your CMAQ simulation please visit the CMAS User Forum for support from EPA and CMAS scientists: **https://forum.cmascenter.org/t/please-read-before-posting/1321** 11 | 12 | If you have identified an error in CMAQ source code or documentation please fill out and submit the form below, or, alternatively, contact us directly at CMAQ_Team@epa.gov. Thank you for your contributions to the CMAQ Community! 13 | 14 | **Description** 15 | A clear and concise description of the issue. 16 | 17 | **Scope and Impact** 18 | A description of how other users might be impacted by this issue. 19 | 20 | **Solution** 21 | Is there a known solution for the issue? If so, how/when will it be shared with other users. 22 | 23 | **Additional context** 24 | Add any other context about the problem here. 25 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HONO_RADM88: -------------------------------------------------------------------------------- 1 | HONO_RADM88 2 | ! Nitrous Acid Photolysis (HONO) 3 | ! HONO + hv -> OH + NO 4 | ! Taken from the original RADM data 5 | ! format: wl, abs_cs, qy 6 | Beginning 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 310.500 2.500E-22 1.000E+00 10 | 311.500 2.025E-21 1.000E+00 11 | 312.500 3.975E-21 1.000E+00 12 | 313.500 4.500E-21 1.000E+00 13 | 314.500 5.258E-21 1.000E+00 14 | 317.500 3.935E-20 1.000E+00 15 | 322.500 3.934E-20 1.000E+00 16 | 327.500 8.513E-20 1.000E+00 17 | 332.500 6.312E-20 1.000E+00 18 | 337.500 1.692E-19 1.000E+00 19 | 342.500 1.139E-19 1.000E+00 20 | 347.500 1.071E-19 1.000E+00 21 | 352.500 2.583E-19 1.000E+00 22 | 357.500 7.305E-20 1.000E+00 23 | 362.500 1.838E-19 1.000E+00 24 | 367.500 2.062E-19 1.000E+00 25 | 372.500 3.707E-20 1.000E+00 26 | 377.500 8.246E-20 1.000E+00 27 | 382.500 1.459E-19 1.000E+00 28 | 387.500 1.421E-20 1.000E+00 29 | 392.500 0.000E+00 1.000E+00 30 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/src/Make_processor: -------------------------------------------------------------------------------- 1 | #! /bin/csh -f 2 | 3 | set echo 4 | 5 | #scom command defines compiler and libraries 6 | source ~/scom -d -c ifc 7 | 8 | set mech_archive = /home/hwo/mech_git_archive 9 | setenv suffix AE_REFRACT 10 | setenv suffix v501 11 | setenv APPL cb05tump_ae6_aq 12 | setenv APPL cb05tucl-chlorine_update 13 | #setenv GC_INC ${mech_archive}/${APPL} 14 | #setenv APPL saprc07tc_ae6_aq 15 | #path of mechanism for gas phase chemistry RXCM.EXT and RXDT files 16 | #setenv GC_INC /home/hwo/cmaq-v5.0/mechanisms/ozone_tracer 17 | #setenv GC_INC /home/hwo/cmaq-v5.0/mechanisms/saprc07tc_xya_isoprene_v5_v50 18 | #setenv GC_INC /home/hwo/cmaq-v5.0/mechanisms/racm2_ae6_aq 19 | setenv GC_INC /home/hwo/tools/mech_processor/cb05tucl-chlorine_update 20 | setenv APPL ${APPL}_${suffix} 21 | # variable used to name executable, i.e., CSQY_TABLE_PROCESSOR_mechanism 22 | #setenv APPL ozone_tracer 23 | #setenv APPL racm2_ae6_aq 24 | 25 | #make clean 26 | 27 | make -f Makefile 28 | 29 | exit() 30 | 31 | 32 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BZCHO_SAPRC99: -------------------------------------------------------------------------------- 1 | BZCHO 2 | ! Benzaldehyde absorbtion coefs in n-Hexane 3 | ! SAPRC-99 Photolysis data. Supplied by William P. L. Carter. 4 | ! Created from PhotDat.xls on 29-Jan-2000 10:07 5 | Points (the mechanism was evaluated assuming this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 299.0 1.776E-19 1.000 9 | 304.0 7.400E-20 1.000 10 | 306.0 6.910E-20 1.000 11 | 309.0 6.410E-20 1.000 12 | 313.0 6.910E-20 1.000 13 | 314.0 6.910E-20 1.000 14 | 318.0 6.410E-20 1.000 15 | 325.0 8.390E-20 1.000 16 | 332.0 7.650E-20 1.000 17 | 338.0 8.880E-20 1.000 18 | 342.0 8.880E-20 1.000 19 | 346.0 7.890E-20 1.000 20 | 349.0 7.890E-20 1.000 21 | 354.0 9.130E-20 1.000 22 | 355.0 8.140E-20 1.000 23 | 364.0 5.670E-20 1.000 24 | 368.0 6.660E-20 1.000 25 | 369.0 8.390E-20 1.000 26 | 370.0 8.390E-20 1.000 27 | 372.0 3.450E-20 1.000 28 | 374.0 3.210E-20 1.000 29 | 376.0 2.470E-20 1.000 30 | 377.0 2.470E-20 1.000 31 | 380.0 3.580E-20 1.000 32 | 382.0 9.900E-21 1.000 33 | 386.0 0.000E+00 1.000 34 | -------------------------------------------------------------------------------- /DOCS/Community_Support.md: -------------------------------------------------------------------------------- 1 | # Community Support 2 | 3 | [![](./Release_Notes/images/CMAQ_Forum.png)](https://forum.cmascenter.org/) 4 | 5 | Technical support for CMAQ, including questions about model inputs, downloading, compiling, and running the model, 6 | and pre- and post-processing utilities, should be directed to the [CMAS Center User Forum](https://forum.cmascenter.org/). 7 | 8 | You can search the forum for past questions and answers on the topic of your interest. To post a new question or respond to an existing post, sign up for the forum by clicking on the "Sign Up" button in the top right corner of the website. 9 | 10 | 11 | > [**Pleae read and follow these steps prior to submitting new questions to the User Forum.**](https://forum.cmascenter.org/t/please-read-before-posting/1321) 12 | 13 | 14 | Visit the CMAQ website to learn about the many individuals and organizations that use and contribute to the CMAQ system: [https://www.epa.gov/cmaq/cmaq-community](https://www.epa.gov/cmaq/cmaq-community) 15 | -------------------------------------------------------------------------------- /PYTOOLS/README.md: -------------------------------------------------------------------------------- 1 | Python Tools for CMAQ 2 | ===================== 3 | 4 | This folder holds python tools for CMAQ. These tools may fill roles that are 5 | usually stored in PREP or POST folders. They are stored here to centralize the 6 | installation requirements. 7 | 8 | These Python Tools require Python v3.6 or higher. Some are written as Jupyter 9 | Notebooks, while others as scripts. All will require some libraries. 10 | 11 | The best way to check your installation is to run: 12 | 13 | `python install/show_versions.py install/requirements.txt` 14 | 15 | For information about how to install, see the install folder. 16 | 17 | Tool Listing 18 | ============ 19 | 20 | * [install](install/README.md) Describes preparing an environment for CMAQ/PYTOOLS. 21 | * [dmschlo](dmschlo/README.md) Prepares DMS and Chlorophyll-A concentrations for CMAQ. 22 | * [shp2cmaq](../PYTOOLS/shp2cmaq/README.md) Creates a CMAQ-ready grid mask from a shape file that can be used for defining regions and region families with DESID and using geographic source regions when running CMAQ-ISAM. 23 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CLONO2-1: -------------------------------------------------------------------------------- 1 | CLONO2-1 2 | ! CLONO2 + hv = CLO. + NO2 3 | ! CLONO2 absorption cross sections and quantum yields recommended by IUPAC (2005) 4 | ! 5 | Points (the mechanism evaluated with this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 280.0 1.190E-19 0.4000 9 | 285.0 8.800E-20 0.4000 10 | 290.0 6.410E-20 0.4000 11 | 295.0 4.380E-20 0.4000 12 | 300.0 3.130E-20 0.4000 13 | 305.0 2.240E-20 0.4000 14 | 310.0 1.600E-20 0.3860 15 | 315.0 1.140E-20 0.3500 16 | 320.0 8.310E-21 0.3140 17 | 325.0 6.130E-21 0.2790 18 | 330.0 4.660E-21 0.2430 19 | 335.0 3.670E-21 0.2070 20 | 340.0 3.020E-21 0.1710 21 | 345.0 2.580E-21 0.1360 22 | 350.0 2.290E-21 0.1000 23 | 355.0 2.080E-21 0.0640 24 | 360.0 2.000E-21 0.0290 25 | 365.0 1.800E-21 0.0000 26 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/H2O2_NASA94: -------------------------------------------------------------------------------- 1 | H2O2_NASA94 2 | ! Hydrogen Peroxide Photolysis (H2O2) 3 | ! H2O2 + hv -> OH + OH 4 | ! Taken from NASA (1994); Absorption CS for T=298 K; 5 | ! format: wl, abs_cs, qy 6 | Points 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0E-20 9 | 190.0 67.2 1.0 10 | 195.0 56.4 1.0 11 | 200.0 47.5 1.0 12 | 205.0 40.8 1.0 13 | 210.0 35.7 1.0 14 | 215.0 30.7 1.0 15 | 220.0 25.8 1.0 16 | 225.0 21.7 1.0 17 | 230.0 18.2 1.0 18 | 235.0 15.0 1.0 19 | 240.0 12.4 1.0 20 | 245.0 10.2 1.0 21 | 250.0 8.3 1.0 22 | 255.0 6.7 1.0 23 | 260.0 5.3 1.0 24 | 265.0 4.2 1.0 25 | 270.0 3.3 1.0 26 | 275.0 2.6 1.0 27 | 280.0 2.0 1.0 28 | 285.0 1.5 1.0 29 | 290.0 1.2 1.0 30 | 295.0 0.90 1.0 31 | 300.0 0.68 1.0 32 | 305.0 0.51 1.0 33 | 310.0 0.39 1.0 34 | 315.0 0.29 1.0 35 | 320.0 0.22 1.0 36 | 325.0 0.16 1.0 37 | 330.0 0.13 1.0 38 | 335.0 0.10 1.0 39 | 340.0 0.07 1.0 40 | 345.0 0.05 1.0 41 | 350.0 0.04 1.0 42 | 43 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/refractive_indices/OPAC_water_clouds/soot00-two_way-Oct_21_2012: -------------------------------------------------------------------------------- 1 | SOOT 2 | !References: 3 | ! 1) For 2.0460 <= lambda <= 3.4615, 4 | ! C&C Chang,H and T.T. Charalmpopoulos (1990) Determination of the 5 | ! wavelength dependence of refractive indices of flame soot, 6 | ! Proceeding of the Royal Society of London A, Vol. 430, pp 577-591. 7 | ! 8 | ! 2) For 1.0101 <= lambda < 1.7840, 9 | ! B&B Bond, T.C. & R.W. Bergstrom (2006) Light absorption by 10 | ! Carbonaceous Particles: An investigative review, 11 | ! Aerosol Science and Technology. Vol. 40. pp 27-67 12 | ! 13 | ! 3) For 0.2316 <= lanbda < 0.70160, 14 | ! Bond Personal Communication from Tami Bond 15 | ! 4) At 0.1500 um added a floor for shortest wavelength bands 16 | ! ------------------- 17 | !wvl,um nr ni 18 | 0.15000 1.850 0.710 19 | 0.23160 1.850 0.710 20 | 0.29900 1.850 0.710 21 | 0.38815 1.850 0.710 22 | 0.53325 1.850 0.710 23 | 1.01010 1.870 0.726 24 | 1.27050 1.905 0.737 25 | 1.78400 1.940 0.760 26 | 2.04600 1.950 0.784 27 | 2.78850 2.014 0.939 28 | 3.46150 2.089 1.070 29 | 30 | -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Transport-Processes.md: -------------------------------------------------------------------------------- 1 | # Transport Processes 2 | 3 | ## Restore Vertical Diffusion and Gravitational Settling Diagnostic Files 4 | [Chris Nolte](mailto:nolte.chris@epa.gov), U.S. Environmental Protection Agency 5 | **Type of update**: Bug Fix 6 | **Release Version/Date**: CMAQv5.5 7 | **Description**: The environment variable `VDIFF_DIAG_FILE` is supposed to control whether the CCTM outputs the vertical diffusion diagnostic file `CTM_VDIFF_DIAG`, and if gravitational settling is being used, additionally the `CTM_VSED_DIAG` file. However, there was a bug that prevented these diagnostic files from being written even if the user requested these outputs in the run script. 8 | **Significance and Impact**: No change to model calculation. Allows for outputting vertical diffusion and gravitational settling diagnostic files. 9 | 10 | |Merge Commit | Internal record| 11 | |:------:|:-------:| 12 | |[Merge for PR#1016](https://github.com/USEPA/CMAQ/commit/eddb4a71ce8e46b509d973462696c9fd8cea7ede) | [PR#1016](https://github.com/USEPA/CMAQ_Dev/pull/1016) | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/KETONE_RADM88: -------------------------------------------------------------------------------- 1 | KETONE_RADM88 2 | ! Methyl Ethyl Ketone (KETONE) 3 | ! CH3COC2H5 + hv -> ACO3 + ETH 4 | ! Abs CS from Calvert and Pitts [1966]; 5 | ! QY from Gardner et al. [1984] 6 | ! format: wl, abs_cs, qy 7 | Beginning 8 | ! With FAC, units are (cm^2/molecule) 9 | FAC=1.0 10 | 277.778 6.000E-20 7.655E-02 11 | 281.690 5.800E-20 7.655E-02 12 | 285.714 5.500E-20 7.655E-02 13 | 289.855 5.100E-20 7.655E-02 14 | 294.118 4.100E-20 7.655E-02 15 | 298.500 3.200E-20 7.655E-02 16 | 302.500 3.000E-20 7.655E-02 17 | 303.500 2.800E-20 7.655E-02 18 | 304.500 2.500E-20 7.655E-02 19 | 305.500 2.300E-20 7.655E-02 20 | 306.500 2.100E-20 7.655E-02 21 | 307.500 1.900E-20 7.655E-02 22 | 308.500 1.700E-20 7.655E-02 23 | 309.500 1.500E-20 7.655E-02 24 | 310.500 1.400E-20 7.655E-02 25 | 311.500 1.200E-20 7.655E-02 26 | 312.500 1.100E-20 7.655E-02 27 | 313.500 1.000E-20 7.655E-02 28 | 314.500 7.800E-21 7.655E-02 29 | 317.500 3.900E-21 7.655E-02 30 | 322.500 1.800E-21 7.655E-02 31 | 327.500 0.000E+00 7.655E-02 32 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/ACETONE_RADM88: -------------------------------------------------------------------------------- 1 | ACETONE_RADM88 2 | ! Acetone Photolysis (ACETONE) 3 | ! CH3COCH3 + hv -> CH3 + CH3CO 4 | ! Taken from the original RADM data 5 | ! format: wl, abs_cs, qy 6 | Beginning 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 277.778 5.300E-20 7.655E-02 10 | 281.690 5.300E-20 7.655E-02 11 | 285.714 5.100E-20 7.655E-02 12 | 289.855 4.400E-20 7.655E-02 13 | 294.118 3.500E-20 7.655E-02 14 | 298.500 3.000E-20 7.655E-02 15 | 302.500 2.800E-20 7.655E-02 16 | 303.500 2.500E-20 7.655E-02 17 | 304.500 2.300E-20 7.655E-02 18 | 305.500 2.100E-20 7.655E-02 19 | 306.500 2.000E-20 7.655E-02 20 | 307.500 1.800E-20 7.655E-02 21 | 308.500 1.700E-20 7.655E-02 22 | 309.500 1.500E-20 7.655E-02 23 | 310.500 1.400E-20 7.655E-02 24 | 311.500 1.300E-20 7.655E-02 25 | 312.500 1.200E-20 7.655E-02 26 | 313.500 1.100E-20 7.655E-02 27 | 314.500 9.200E-21 7.655E-02 28 | 317.500 5.300E-21 7.655E-02 29 | 322.500 2.800E-21 7.655E-02 30 | 327.500 1.900E-21 7.655E-02 31 | 332.500 0.000E+00 7.655E-02 32 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HO2NO2_SAPRC99: -------------------------------------------------------------------------------- 1 | HO2NO2 2 | ! HO2NO2 + HV = PRODUCTS 3 | ! SAPRC-99 Photolysis data. Supplied by William P. L. Carter. 4 | ! Created from PhotDat.xls on 29-Jan-2000 10:07 5 | Points (the mechanism was evaluated assuming this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 190.0 1.010E-17 1.000 9 | 195.0 8.160E-18 1.000 10 | 200.0 5.630E-18 1.000 11 | 205.0 3.670E-18 1.000 12 | 210.0 2.390E-18 1.000 13 | 215.0 1.610E-18 1.000 14 | 220.0 1.180E-18 1.000 15 | 225.0 9.320E-19 1.000 16 | 230.0 7.880E-19 1.000 17 | 235.0 6.800E-19 1.000 18 | 240.0 5.790E-19 1.000 19 | 245.0 4.970E-19 1.000 20 | 250.0 4.110E-19 1.000 21 | 255.0 3.490E-19 1.000 22 | 260.0 2.840E-19 1.000 23 | 265.0 2.290E-19 1.000 24 | 270.0 1.800E-19 1.000 25 | 275.0 1.330E-19 1.000 26 | 280.0 9.300E-20 1.000 27 | 285.0 6.200E-20 1.000 28 | 290.0 3.900E-20 1.000 29 | 295.0 2.400E-20 1.000 30 | 300.0 1.400E-20 1.000 31 | 305.0 8.500E-21 1.000 32 | 310.0 5.300E-21 1.000 33 | 315.0 3.900E-21 1.000 34 | 320.0 2.400E-21 1.000 35 | 325.0 1.500E-21 1.000 36 | 330.0 9.000E-22 1.000 37 | 335.0 0.000E+00 1.000 38 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CLNO2: -------------------------------------------------------------------------------- 1 | CLNO2 2 | ! CLNO2 + HV = CL + NO2 3 | ! FROM IUPAC EVALUATION (1996) 4 | ! RECOMMEND UNIT QUANTUM YILED 5 | Points (the mechanism evaluated with this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 190.0 2.690E-17 1.0000 9 | 200.0 4.680E-18 1.0000 10 | 210.0 3.200E-18 1.0000 11 | 220.0 3.390E-18 1.0000 12 | 230.0 2.260E-18 1.0000 13 | 240.0 1.330E-18 1.0000 14 | 250.0 9.060E-19 1.0000 15 | 260.0 6.130E-19 1.0000 16 | 270.0 3.530E-19 1.0000 17 | 280.0 2.200E-19 1.0000 18 | 290.0 1.730E-19 1.0000 19 | 300.0 1.490E-19 1.0000 20 | 310.0 1.210E-19 1.0000 21 | 320.0 8.870E-20 1.0000 22 | 330.0 5.840E-20 1.0000 23 | 340.0 3.540E-20 1.0000 24 | 350.0 2.040E-20 1.0000 25 | 360.0 1.150E-20 1.0000 26 | 370.0 6.900E-21 1.0000 27 | 380.0 0.000E+00 1.0000 28 | -------------------------------------------------------------------------------- /DOCS/Users_Guide/readme.pandoc: -------------------------------------------------------------------------------- 1 | Command to build PDF using pandoc on Liz's mac 2 | 3 | pandoc -s -N --template=./templates/mytemplate.tex --filter ./filter/comments.py --variable mainfont="Times New Roman" --variable sansfont="Helvetica" --variable monofont="Menlo" --variable fontsize=12pt --variable version=5.4 -fmarkdown-implicit_figures --variable title="CMAQv5.4 User Manual" --variable subtitle="10/10/2022" --toc --variable geometry:margin=1in --pdf-engine=xelatex -s -o ./PDF/CMAQ_UG_10_2022.pdf CMAQ_UG_ch01_overview.md CMAQ_UG_ch02_program_structure.md CMAQ_UG_ch03_preparing_compute_environment.md CMAQ_UG_ch04_model_inputs.md CMAQ_UG_ch05_running_a_simulation.md CMAQ_UG_ch06_model_configuration_options.md CMAQ_UG_ch07_model_outputs.md CMAQ_UG_ch08_analysis_tools.md CMAQ_UG_ch09_process_analysis.md CMAQ_UG_ch10_HDDM-3D.md CMAQ_UG_ch11_ISAM.md CMAQ_UG_ch12_sulfur_tracking.md CMAQ_UG_ch13_WRF-CMAQ.md ./Appendix/CMAQ_UG_appendixA_model_options.md ./Appendix/CMAQ_UG_appendixB_emissions_control.md ./Appendix/CMAQ_UG_appendixC_spatial_data.md ./Appendix/CMAQ_UG_appendixD_parallel_implementation.md ./Appendix/CMAQ_UG_appendixE_configuring_WRF.md 4 | -------------------------------------------------------------------------------- /license.md: -------------------------------------------------------------------------------- 1 | # MIT License 2 | 3 | Copyright (c) 2019 U.S. Federal Government (in countries where recognized) 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: 6 | 7 | The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. 8 | 9 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. 10 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | # general files to ignore 2 | 3 | ### Fortran ### 4 | # Prerequisites 5 | *.d 6 | 7 | # Compiled Object files 8 | *.slo 9 | *.lo 10 | *.o 11 | *.obj 12 | 13 | # Precompiled Headers 14 | *.gch 15 | *.pch 16 | 17 | # Compiled Dynamic libraries 18 | *.so 19 | *.dylib 20 | *.dll 21 | 22 | # Fortran module files 23 | *.mod 24 | *.smod 25 | 26 | # Compiled Static libraries 27 | *.lai 28 | *.la 29 | *.a 30 | *.lib 31 | 32 | # Executables 33 | *.exe 34 | *.out 35 | *.app 36 | 37 | #archives 38 | *.tar 39 | *.gz 40 | 41 | #temporary files 42 | *.swp 43 | *~ 44 | 45 | #library symbolic links 46 | lib/ 47 | 48 | #file unique to repository 49 | CTM_LOG* 50 | BLD* 51 | *.log 52 | *_bak 53 | BLDMAKE* 54 | CHEMMECH* 55 | JPROC_* 56 | ICON_* 57 | BCON_* 58 | UTIL/chemmech/input 59 | UTIL/chemmech/output 60 | UTIL/create_ebi/output 61 | UTIL/create_ebi/input 62 | UTIL/inline_phot_preproc/output 63 | UTIL/inline_phot_preproc/input 64 | UTIL/inline_phot_preproc/bldrun.log 65 | 66 | #user specific scripts 67 | /scripts/ 68 | 69 | 70 | #unique to user; below section unlikely to add and commit to repository 71 | bldit_project.csh 72 | 73 | 74 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HONO_NASA94: -------------------------------------------------------------------------------- 1 | HONO_NASA94 2 | ! Nitrous Acid Photolysis (HONO) 3 | ! HONO + hv -> OH + NO 4 | ! Taken from the original RADM data, with NASA (1994) updates 5 | ! format: wl, abs_cs, qy 6 | Centered 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 309.000 0.000E+00 1.000E+00 10 | 310.000 1.300E-20 1.000E+00 11 | 311.000 1.900E-20 1.000E+00 12 | 312.000 2.800E-20 1.000E+00 13 | 313.000 2.200E-20 1.000E+00 14 | 314.000 3.600E-20 1.000E+00 15 | 316.000 2.500E-20 1.000E+00 16 | 320.000 5.360E-20 1.000E+00 17 | 325.000 5.340E-20 1.000E+00 18 | 330.000 1.110E-19 1.000E+00 19 | 335.000 7.860E-20 1.000E+00 20 | 340.000 1.888E-19 1.000E+00 21 | 345.000 1.164E-19 1.000E+00 22 | 350.000 1.298E-19 1.000E+00 23 | 355.000 2.788E-19 1.000E+00 24 | 360.000 9.540E-20 1.000E+00 25 | 365.000 1.790E-19 1.000E+00 26 | 370.000 2.598E-19 1.000E+00 27 | 375.000 5.900E-20 1.000E+00 28 | 380.000 1.012E-19 1.000E+00 29 | 385.000 1.756E-19 1.000E+00 30 | 390.000 3.040E-20 1.000E+00 31 | 395.000 6.200E-21 1.000E+00 32 | 400.000 0.000E+00 1.000E+00 33 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CH3I_IUPAC10: -------------------------------------------------------------------------------- 1 | CH3I_IUPAC10 2 | ! CH3I + HV = I + MEO2 3 | ! CH3I Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 205.0 7.000E-20 1.000 10 | 210.0 3.800E-20 1.000 11 | 215.0 5.200E-20 1.000 12 | 220.0 6.900E-20 1.000 13 | 225.0 9.100E-20 1.000 14 | 230.0 1.260E-19 1.000 15 | 235.0 2.020E-19 1.000 16 | 240.0 3.740E-19 1.000 17 | 245.0 6.360E-19 1.000 18 | 250.0 9.210E-19 1.000 19 | 255.0 1.111E-18 1.000 20 | 260.0 1.123E-18 1.000 21 | 265.0 9.660E-19 1.000 22 | 270.0 7.170E-19 1.000 23 | 275.0 4.710E-19 1.000 24 | 280.0 2.800E-19 1.000 25 | 285.0 1.520E-19 1.000 26 | 290.0 7.790E-20 1.000 27 | 295.0 3.920E-20 1.000 28 | 300.0 2.030E-20 1.000 29 | 305.0 1.090E-20 1.000 30 | 310.0 6.190E-21 1.000 31 | 315.0 3.560E-21 1.000 32 | 320.0 2.150E-21 1.000 33 | 325.0 1.240E-21 1.000 34 | 330.0 7.000E-22 1.000 35 | 335.0 3.300E-22 1.000 36 | 340.0 2.300E-22 1.000 37 | 345.0 1.270E-22 1.000 38 | 350.0 6.700E-23 1.000 39 | 355.0 2.600E-23 1.000 40 | 360.0 1.300E-23 1.000 41 | 365.0 4.000E-24 1.000 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NOA_0_MCMv32: -------------------------------------------------------------------------------- 1 | NOA_O_MCMv32 2 | !nitrooxy-acetone (NOA) photolysis quantum yields 3 | !cross section based on 4 | ! J.M. Roberts and R.W. Fajer, UV absorption cross sections of organic nitrates 5 | ! of potential atmospheric importance and estimation of atmospheric lifetimes, 6 | ! Environ. Sci. Technol. 23, 945-951 (1989). 7 | ! quantum yield based on set to zero out rate 8 | ! 9 | !phi1 (CH3C(O)CH2O + NO2) 10 | !phi2 (CH3CO + HCHO + NO2) 11 | !phi3 (total) 12 | ! 13 | !wavelength (nm) phi3 14 | Points (the mechanism evaluated with this format) 15 | ! With FAC, units are (cm^2/molecule) 16 | FAC=1.0 17 | 245 2.29E-19 0.000 18 | 250 1.47E-19 0.000 19 | 255 1.07E-19 0.000 20 | 260 8.53E-20 0.000 21 | 265 7.63E-20 0.000 22 | 270 7.29E-20 0.000 23 | 275 7.02E-20 0.000 24 | 280 6.67E-20 0.000 25 | 285 6.25E-20 0.000 26 | 290 5.83E-20 0.000 27 | 295 5.18E-20 0.000 28 | 300 4.48E-20 0.000 29 | 305 3.61E-20 0.000 30 | 310 2.69E-20 0.000 31 | 315 1.86E-20 0.000 32 | 320 1.31E-20 0.000 33 | 325 7.90E-21 0.000 34 | 330 4.55E-21 0.000 35 | 335 2.20E-21 0.000 36 | 340 1.60E-21 0.000 37 | 345 0.00E+00 0.000 38 | 350 0.00E+00 0.000 39 | -------------------------------------------------------------------------------- /UTIL/bldmake/src/Makefile: -------------------------------------------------------------------------------- 1 | # make file to build bldmake program 2 | 3 | EXEC = bldmake 4 | 5 | #To use nondefault compiler, type "make COMPILER=compiler" where compiler is PGF90 or GFORT. 6 | 7 | ifndef COMPILER 8 | #COMPILER = INTEL 9 | #COMPILER = PGF90 10 | COMPILER = GFORT 11 | endif 12 | 13 | ifeq ($(COMPILER),INTEL) 14 | FC = ifort 15 | #F_FLAGS = -O2 -fixed -extend_source -WB 16 | F_FLAGS = -g -fixed -CU -CB -g -traceback -extend_source -WB 17 | else ifeq ($(COMPILER),PGF90) 18 | FC = pgf90 19 | F_FLAGS = -Bstatic -Mextend -Mbounds -Mfixed -traceback -Mbackslash 20 | else ifeq ($(COMPILER),GFORT) 21 | FC = gfortran 22 | F_FLAGS = -ffixed-form -ffixed-line-length-132 -fcheck=all -fbacktrace 23 | else 24 | ERROR1 = "Makefile does not configure to support the specified compiler, $(COMPILER). User must modify Makefile." 25 | endif 26 | 27 | ifdef ERROR1 28 | $(error $(ERROR1)) 29 | endif 30 | 31 | OBJS= cfg_module.o parser.o utils.o bldmake.o 32 | 33 | .SUFFIXES: .f 34 | 35 | $(EXEC): $(OBJS) 36 | $(FC) $(OBJS) -o $@ 37 | 38 | .f.o: 39 | $(FC) -c $(F_FLAGS) $< 40 | 41 | clean: 42 | \rm -f *.o *.mod 43 | # make file to build bldmake program 44 | 45 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/O2_NASA94: -------------------------------------------------------------------------------- 1 | O2_NASA94 2 | ! Molecular Oxygen photolysis (O2) 3 | ! O2 + hv -> O + O 4 | ! Taken from NASA (1994); QY was set to 1.0 and is not used in the 5 | ! photolysis rate program. 6 | ! format: wl, abs_cs, qy 7 | Centered 8 | ! With FAC, units are (cm^2/molecule) 9 | FAC=1.0E-24 10 | 205 7.35 1.0 11 | 206 7.13 1.0 12 | 207 7.05 1.0 13 | 208 6.86 1.0 14 | 209 6.68 1.0 15 | 210 6.51 1.0 16 | 211 6.24 1.0 17 | 212 6.05 1.0 18 | 213 5.89 1.0 19 | 214 5.72 1.0 20 | 215 5.59 1.0 21 | 216 5.35 1.0 22 | 217 5.13 1.0 23 | 218 4.88 1.0 24 | 219 4.64 1.0 25 | 220 4.46 1.0 26 | 221 4.26 1.0 27 | 222 4.09 1.0 28 | 223 3.89 1.0 29 | 224 3.67 1.0 30 | 225 3.45 1.0 31 | 226 3.21 1.0 32 | 227 2.98 1.0 33 | 228 2.77 1.0 34 | 229 2.63 1.0 35 | 230 2.43 1.0 36 | 231 2.25 1.0 37 | 232 2.10 1.0 38 | 233 1.94 1.0 39 | 234 1.78 1.0 40 | 235 1.63 1.0 41 | 236 1.48 1.0 42 | 237 1.34 1.0 43 | 238 1.22 1.0 44 | 239 1.10 1.0 45 | 240 1.01 1.0 46 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/IC3ONO2_SAPRC99: -------------------------------------------------------------------------------- 1 | IC3ONO2 2 | ! I-C3H7ONO2 + HV = PRODUCTS 3 | ! SAPRC-99 Photolysis data. Supplied by William P. L. Carter. 4 | ! Created from PhotDat.xls on 29-Jan-2000 10:07 5 | Points (the mechanism was evaluated assuming this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 185.0 1.790E-17 1.000 9 | 188.0 1.810E-17 1.000 10 | 190.0 1.790E-17 1.000 11 | 195.0 1.610E-17 1.000 12 | 200.0 1.260E-17 1.000 13 | 205.0 8.670E-18 1.000 14 | 210.0 4.980E-18 1.000 15 | 215.0 2.470E-18 1.000 16 | 220.0 1.170E-18 1.000 17 | 225.0 5.800E-19 1.000 18 | 230.0 3.100E-19 1.000 19 | 235.0 1.800E-19 1.000 20 | 240.0 1.100E-19 1.000 21 | 245.0 7.000E-20 1.000 22 | 250.0 5.700E-20 1.000 23 | 255.0 5.200E-20 1.000 24 | 260.0 4.900E-20 1.000 25 | 265.0 4.600E-20 1.000 26 | 270.0 4.100E-20 1.000 27 | 275.0 3.600E-20 1.000 28 | 280.0 2.900E-20 1.000 29 | 285.0 2.300E-20 1.000 30 | 290.0 1.700E-20 1.000 31 | 295.0 1.200E-20 1.000 32 | 300.0 8.100E-21 1.000 33 | 305.0 5.200E-21 1.000 34 | 310.0 3.200E-21 1.000 35 | 315.0 1.900E-21 1.000 36 | 320.0 1.100E-21 1.000 37 | 325.0 6.100E-22 1.000 38 | 330.0 3.700E-22 1.000 39 | 335.0 0.000E+00 1.000 40 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/PNA_IUPAC10: -------------------------------------------------------------------------------- 1 | PNA_IUPAC10 2 | ! j(PNA) IUPAC(2010) 3 | ! PNA = 0.61 HO2 + 0.61 NO2 + 0.39 OH + 0.39 NO3 4 | ! From IUPAC Subcommittee on Gas Kinetic Data Evaluation 5 | ! Data Sheet PNxO3, updated 16th Jul, 2001 6 | ! These are point values 7 | Begining (the mechanism evaluated with this format) 8 | !WL(nm) XSEC(cm2) QY 9 | FAC=1.0 10 | 190.0 1.01e-17 1.000 11 | 195.0 8.16e-18 1.000 12 | 200.0 5.63e-18 1.000 13 | 205.0 3.67e-18 1.000 14 | 210.0 2.39e-18 1.000 15 | 215.0 1.61e-18 1.000 16 | 220.0 1.18e-18 1.000 17 | 225.0 9.32e-19 1.000 18 | 230.0 7.88e-19 1.000 19 | 235.0 6.80e-19 1.000 20 | 240.0 5.79e-19 1.000 21 | 245.0 4.97e-19 1.000 22 | 250.0 4.11e-19 1.000 23 | 255.0 3.49e-19 1.000 24 | 260.0 2.84e-19 1.000 25 | 265.0 2.29e-19 1.000 26 | 270.0 1.80e-19 1.000 27 | 275.0 1.33e-19 1.000 28 | 280.0 9.30e-20 1.000 29 | 285.0 6.20e-20 1.000 30 | 290.0 3.90e-20 1.000 31 | 295.0 2.40e-20 1.000 32 | 300.0 1.40e-20 1.000 33 | 305.0 8.50e-21 1.000 34 | 310.0 5.30e-21 1.000 35 | 315.0 3.90e-21 1.000 36 | 320.0 2.40e-21 1.000 37 | 325.0 1.50e-21 1.000 38 | 330.0 9.00e-22 1.000 39 | 331.0 0.000000 0.000 40 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NOA: -------------------------------------------------------------------------------- 1 | NOA 2 | !nitrooxy-acetone (NOA) photolysis cross sections (298 K) as MCM 3 | !Data form the MPI-Mainz spectral atlas: 4 | !http://www.atmosphere.mpg.de/enid/2295 5 | !Average of: 6 | !1. I. Barnes, K.H. Becker, and T. Zhu 7 | !J. Atmos. Chem. 17, 353-373 (1993). 8 | !2. J.M. Roberts and R.W. Fajer 9 | !Environ. Sci. Technol. 23, 945-951 (1989). 10 | ! 11 | !quantum yields: estimated by analogy to the photolysis of ethyl nitrate and acetone as MCM 12 | ! 13 | Points (the mechanism evaluated with this format) 14 | ! With FAC, units are (cm^2/molecule) 15 | FAC=1.0 16 | 245.0 2.29E-19 0.94 17 | 250.0 1.47E-19 0.94 18 | 255.0 1.07E-19 0.94 19 | 260.0 8.53E-20 0.94 20 | 265.0 7.63E-20 0.92 21 | 270.0 7.29E-20 0.9 22 | 275.0 7.02E-20 0.85 23 | 280.0 6.67E-20 0.8 24 | 285.0 6.25E-20 0.75 25 | 290.0 5.83E-20 0.65 26 | 295.0 5.18E-20 0.56 27 | 300.0 4.48E-20 0.47 28 | 305.0 3.61E-20 0.39 29 | 310.0 2.69E-20 0.32 30 | 315.0 1.86E-20 0.262 31 | 320.0 1.31E-20 0.193 32 | 325.0 7.90E-21 0.164 33 | 330.0 4.55E-21 0.125 34 | 335.0 2.20E-21 0.137 35 | 340.0 1.60E-21 0.139 36 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/COOH_SAPRC99: -------------------------------------------------------------------------------- 1 | COOH 2 | ! CH3OOH + HV = PRODUCTS 3 | ! SAPRC-99 Photolysis data. Supplied by William P. L. Carter. 4 | ! Created from PhotDat.xls on 29-Jan-2000 10:07 5 | Points (the mechanism was evaluated assuming this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 210.0 3.120E-19 1.000 9 | 215.0 2.090E-19 1.000 10 | 220.0 1.540E-19 1.000 11 | 225.0 1.220E-19 1.000 12 | 230.0 9.620E-20 1.000 13 | 235.0 7.610E-20 1.000 14 | 240.0 6.050E-20 1.000 15 | 245.0 4.880E-20 1.000 16 | 250.0 3.980E-20 1.000 17 | 255.0 3.230E-20 1.000 18 | 260.0 2.560E-20 1.000 19 | 265.0 2.110E-20 1.000 20 | 270.0 1.700E-20 1.000 21 | 275.0 1.390E-20 1.000 22 | 280.0 1.090E-20 1.000 23 | 285.0 8.630E-21 1.000 24 | 290.0 6.910E-21 1.000 25 | 295.0 5.510E-21 1.000 26 | 300.0 4.130E-21 1.000 27 | 305.0 3.130E-21 1.000 28 | 310.0 2.390E-21 1.000 29 | 315.0 1.820E-21 1.000 30 | 320.0 1.370E-21 1.000 31 | 325.0 1.050E-21 1.000 32 | 330.0 7.900E-22 1.000 33 | 335.0 6.100E-22 1.000 34 | 340.0 4.700E-22 1.000 35 | 345.0 3.500E-22 1.000 36 | 350.0 2.700E-22 1.000 37 | 355.0 2.100E-22 1.000 38 | 360.0 1.600E-22 1.000 39 | 365.0 1.200E-22 1.000 40 | 370.0 0.000E+00 1.000 41 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NITROXY_ACET_93: -------------------------------------------------------------------------------- 1 | NOA 2 | !nitrooxy-acetone (NOA) photolysis cross sections (298 K) as MCM 3 | !Data form the MPI-Mainz spectral atlas: 4 | !http://www.atmosphere.mpg.de/enid/2295 5 | !Average of: 6 | !1. I. Barnes, K.H. Becker, and T. Zhu 7 | !J. Atmos. Chem. 17, 353-373 (1993). 8 | !2. J.M. Roberts and R.W. Fajer 9 | !Environ. Sci. Technol. 23, 945-951 (1989). 10 | ! 11 | !quantum yields: estimated by analogy to the photolysis of ethyl nitrate and acetone as MCM 12 | ! 13 | Points (the mechanism evaluated with this format) 14 | ! With FAC, units are (cm^2/molecule) 15 | FAC=1.0 16 | 245.0 2.29E-19 0.94 17 | 250.0 1.47E-19 0.94 18 | 255.0 1.07E-19 0.94 19 | 260.0 8.53E-20 0.94 20 | 265.0 7.63E-20 0.92 21 | 270.0 7.29E-20 0.9 22 | 275.0 7.02E-20 0.85 23 | 280.0 6.67E-20 0.8 24 | 285.0 6.25E-20 0.75 25 | 290.0 5.83E-20 0.65 26 | 295.0 5.18E-20 0.56 27 | 300.0 4.48E-20 0.47 28 | 305.0 3.61E-20 0.39 29 | 310.0 2.69E-20 0.32 30 | 315.0 1.86E-20 0.262 31 | 320.0 1.31E-20 0.193 32 | 325.0 7.90E-21 0.164 33 | 330.0 4.55E-21 0.125 34 | 335.0 2.20E-21 0.137 35 | 340.0 1.60E-21 0.139 36 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/NITROXY_ACET_2014: -------------------------------------------------------------------------------- 1 | NOA_14 2 | !nitrooxy-acetone (NOA) photolysis cross sections (298 K) as MCM 3 | !Data form the MPI-Mainz spectral atlas: 4 | !http://www.atmosphere.mpg.de/enid/2295 5 | !Average of: 6 | !1. I. Barnes, K.H. Becker, and T. Zhu 7 | !J. Atmos. Chem. 17, 353-373 (1993). 8 | !2. J.M. Roberts and R.W. Fajer 9 | !Environ. Sci. Technol. 23, 945-951 (1989). 10 | ! 11 | !quantum yields: set to 1.0 as per Suarez-Bertoa et al., Env. Sci. Tech., 12 | ! Vol. 46,12502-12509, 2012 13 | ! 14 | Points (the mechanism evaluated with this format) 15 | ! With FAC, units are (cm^2/molecule) 16 | FAC=1.0 17 | 245.0 2.29E-19 1.0 18 | 250.0 1.47E-19 1.0 19 | 255.0 1.07E-19 1.0 20 | 260.0 8.53E-20 1.0 21 | 265.0 7.63E-20 1.0 22 | 270.0 7.29E-20 1.0 23 | 275.0 7.02E-20 1.0 24 | 280.0 6.67E-20 1.0 25 | 285.0 6.25E-20 1.0 26 | 290.0 5.83E-20 1.0 27 | 295.0 5.18E-20 1.0 28 | 300.0 4.48E-20 1.0 29 | 305.0 3.61E-20 1.0 30 | 310.0 2.69E-20 1.0 31 | 315.0 1.86E-20 1.0 32 | 320.0 1.31E-20 1.0 33 | 325.0 7.90E-21 1.0 34 | 330.0 4.55E-21 1.0 35 | 335.0 2.20E-21 1.0 36 | 340.0 1.60E-21 1.0 37 | -------------------------------------------------------------------------------- /CCTM/src/ddm3d/dact.inc: -------------------------------------------------------------------------------- 1 | C =================================================================== 2 | C This file is the include file for calculating sensitivity of 3 | C the activity coefficient of ISORROPIAII 4 | C 5 | C Written by Wenxian Zhang in August 2011 6 | C 7 | C Reference: 8 | C Zhang, W., Capps, S. L., Hu, Y., Nenes, A., Napelenok, S. L., & 9 | C Russell, A. G. (2012). Development of the high-order decoupled 10 | C direct method in three dimensions for particulate matter: 11 | C enabling advanced sensitivity analysis in air quality models. 12 | C Geoscientific Model Development, 5(2), 355-368. 13 | C doi: 10.5194/gmd-5-355-2012 14 | C =================================================================== 15 | 16 | 17 | 18 | DOUBLE PRECISION DI(NIONSPC) 19 | DOUBLE PRECISION G0P(NPAIR) 20 | DOUBLE PRECISION DG0(NIONSPC,NPAIR) 21 | DOUBLE PRECISION H,DH 22 | DOUBLE PRECISION X(6,4), Y(6,4) 23 | DOUBLE PRECISION DX(NIONSPC,6,4),DY(NIONSPC,6,4) 24 | INTEGER IJMAP(6,4) 25 | DOUBLE PRECISION AGAMA 26 | 27 | COMMON /HDDMISO/ H, G0P, X, Y, 28 | & DI, DY, DX, DG0, DH, 29 | & AGAMA, IJMAP 30 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/H2O2_SAPRC99: -------------------------------------------------------------------------------- 1 | H2O2 2 | ! H2O2 + HV = 2 OH 3 | ! SAPRC-99 Photolysis data. Supplied by William P. L. Carter. 4 | ! Created from PhotDat.xls on 29-Jan-2000 10:07 5 | Points (the mechanism was evaluated assuming this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 190.0 6.720E-19 1.000 9 | 195.0 5.630E-19 1.000 10 | 200.0 4.750E-19 1.000 11 | 205.0 4.080E-19 1.000 12 | 210.0 3.570E-19 1.000 13 | 215.0 3.070E-19 1.000 14 | 220.0 2.580E-19 1.000 15 | 225.0 2.170E-19 1.000 16 | 230.0 1.820E-19 1.000 17 | 235.0 1.500E-19 1.000 18 | 240.0 1.240E-19 1.000 19 | 245.0 1.020E-19 1.000 20 | 250.0 8.300E-20 1.000 21 | 255.0 6.700E-20 1.000 22 | 260.0 5.300E-20 1.000 23 | 265.0 4.200E-20 1.000 24 | 270.0 3.300E-20 1.000 25 | 275.0 2.600E-20 1.000 26 | 280.0 2.000E-20 1.000 27 | 285.0 1.500E-20 1.000 28 | 290.0 1.200E-20 1.000 29 | 295.0 9.000E-21 1.000 30 | 300.0 6.800E-21 1.000 31 | 305.0 5.100E-21 1.000 32 | 310.0 3.900E-21 1.000 33 | 315.0 2.900E-21 1.000 34 | 320.0 2.200E-21 1.000 35 | 325.0 1.600E-21 1.000 36 | 330.0 1.300E-21 1.000 37 | 335.0 1.000E-21 1.000 38 | 340.0 7.000E-22 1.000 39 | 345.0 5.000E-22 1.000 40 | 350.0 4.000E-22 1.000 41 | 355.0 0.000E+00 1.000 42 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HNO3_SAPRC99: -------------------------------------------------------------------------------- 1 | HNO3 2 | ! HNO3 + HV = products 3 | ! SAPRC-99 Photolysis data. Supplied by William P. L. Carter. 4 | ! Created from PhotDat.xls on 29-Jan-2000 10:07 5 | Points (the mechanism was evaluated assuming this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 190.0 1.360E-17 1.000 9 | 195.0 1.020E-17 1.000 10 | 200.0 5.880E-18 1.000 11 | 205.0 2.800E-18 1.000 12 | 210.0 1.040E-18 1.000 13 | 215.0 3.650E-19 1.000 14 | 220.0 1.490E-19 1.000 15 | 225.0 8.810E-20 1.000 16 | 230.0 5.750E-20 1.000 17 | 235.0 3.750E-20 1.000 18 | 240.0 2.580E-20 1.000 19 | 245.0 2.110E-20 1.000 20 | 250.0 1.970E-20 1.000 21 | 255.0 1.950E-20 1.000 22 | 260.0 1.910E-20 1.000 23 | 265.0 1.800E-20 1.000 24 | 270.0 1.620E-20 1.000 25 | 275.0 1.380E-20 1.000 26 | 280.0 1.120E-20 1.000 27 | 285.0 8.580E-21 1.000 28 | 290.0 6.150E-21 1.000 29 | 295.0 4.120E-21 1.000 30 | 300.0 2.630E-21 1.000 31 | 305.0 1.500E-21 1.000 32 | 310.0 8.100E-22 1.000 33 | 315.0 4.100E-22 1.000 34 | 320.0 2.000E-22 1.000 35 | 325.0 9.500E-23 1.000 36 | 330.0 4.300E-23 1.000 37 | 335.0 2.200E-23 1.000 38 | 340.0 1.000E-23 1.000 39 | 345.0 6.000E-24 1.000 40 | 350.0 4.000E-24 1.000 41 | 355.0 0.000E+00 1.000 42 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/INO2_06: -------------------------------------------------------------------------------- 1 | INO2_06 2 | ! INO2 + HV = I + NO2 3 | ! INO2 Photolysis data (QY assumed) 4 | ! Supplied by Golam Sarwar 5 | ! Created from NASA/JPL dataset 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 210.0 2.360E-18 1.000 10 | 215.0 1.870E-18 1.000 11 | 220.0 1.960E-18 1.000 12 | 225.0 2.790E-18 1.000 13 | 230.0 3.470E-18 1.000 14 | 235.0 3.990E-18 1.000 15 | 240.0 4.220E-18 1.000 16 | 245.0 4.000E-18 1.000 17 | 250.0 3.300E-18 1.000 18 | 255.0 2.340E-18 1.000 19 | 260.0 1.620E-18 1.000 20 | 265.0 9.960E-19 1.000 21 | 270.0 8.710E-19 1.000 22 | 275.0 8.980E-19 1.000 23 | 280.0 9.960E-19 1.000 24 | 285.0 9.220E-19 1.000 25 | 290.0 8.100E-19 1.000 26 | 295.0 6.200E-19 1.000 27 | 300.0 3.730E-19 1.000 28 | 305.0 3.080E-19 1.000 29 | 310.0 2.470E-19 1.000 30 | 315.0 2.510E-19 1.000 31 | 320.0 2.750E-19 1.000 32 | 325.0 3.250E-19 1.000 33 | 330.0 3.120E-19 1.000 34 | 335.0 3.490E-19 1.000 35 | 340.0 3.730E-19 1.000 36 | 345.0 3.730E-19 1.000 37 | 350.0 2.980E-19 1.000 38 | 355.0 2.950E-19 1.000 39 | 360.0 2.710E-19 1.000 40 | 365.0 2.070E-19 1.000 41 | 370.0 1.490E-19 1.000 42 | 375.0 7.400E-20 1.000 43 | 380.0 2.400E-20 1.000 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HNO3_IUPAC04: -------------------------------------------------------------------------------- 1 | HNO3_IUPAC04 2 | !HONO2 + HV = OH + NO2 3 | ! From IUPAC Subcommittee on Gas Kinetic Data Evaluation 4 | ! Data Sheet PNOx2_HONO2, updated 16th July 2001 5 | ! Website: http://www.iupac-kinetic.ch.cam.ac.uk/ 6 | Points (These are point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 190.0 1.360E-17 1.000 10 | 195.0 1.020E-17 1.000 11 | 200.0 5.880E-18 1.000 12 | 205.0 2.800E-18 1.000 13 | 210.0 1.040E-18 1.000 14 | 215.0 3.650E-19 1.000 15 | 220.0 1.490E-19 1.000 16 | 225.0 8.810E-20 1.000 17 | 230.0 5.750E-20 1.000 18 | 235.0 3.750E-20 1.000 19 | 240.0 2.580E-20 1.000 20 | 245.0 2.110E-20 1.000 21 | 250.0 1.970E-20 1.000 22 | 255.0 1.950E-20 1.000 23 | 260.0 1.910E-20 1.000 24 | 265.0 1.800E-20 1.000 25 | 270.0 1.620E-20 1.000 26 | 275.0 1.380E-20 1.000 27 | 280.0 1.120E-20 1.0 28 | 285.0 8.580E-21 1.0 29 | 290.0 6.150E-21 1.0 30 | 295.0 4.120E-21 1.0 31 | 300.0 2.630E-21 1.0 32 | 305.0 1.500E-21 1.0 33 | 310.0 8.100E-22 1.0 34 | 315.0 4.100E-22 1.0 35 | 320.0 2.000E-22 1.0 36 | 325.0 9.500E-23 1.0 37 | 330.0 4.300E-23 1.0 38 | 335.0 2.200E-23 1.0 39 | 340.0 1.000E-23 1.0 40 | 345.0 6.000E-24 1.0 41 | 350.0 4.000E-24 1.0 42 | 355.0 0.0 1.0 43 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MIB_IUPAC10: -------------------------------------------------------------------------------- 1 | MIB_IUPAC10 2 | ! MIB + HV = I + BR 3 | ! MIB Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset PI11 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 215.0 5.670E-18 1.000 10 | 220.0 4.230E-18 1.000 11 | 225.0 2.690E-18 1.000 12 | 230.0 1.550E-18 1.000 13 | 235.0 9.790E-19 1.000 14 | 240.0 8.090E-19 1.000 15 | 245.0 9.370E-19 1.000 16 | 250.0 1.250E-18 1.000 17 | 255.0 1.700E-18 1.000 18 | 260.0 2.070E-18 1.000 19 | 265.0 2.280E-18 1.000 20 | 270.0 2.290E-18 1.000 21 | 275.0 2.140E-18 1.000 22 | 280.0 1.840E-18 1.000 23 | 285.0 1.500E-18 1.000 24 | 290.0 1.100E-18 1.000 25 | 295.0 8.250E-19 1.000 26 | 300.0 6.060E-19 1.000 27 | 305.0 4.290E-19 1.000 28 | 310.0 3.140E-19 1.000 29 | 315.0 2.310E-19 1.000 30 | 320.0 1.680E-19 1.000 31 | 325.0 1.150E-19 1.000 32 | 330.0 8.020E-20 1.000 33 | 335.0 5.520E-20 1.000 34 | 340.0 3.500E-20 1.000 35 | 345.0 2.240E-20 1.000 36 | 350.0 1.410E-20 1.000 37 | 355.0 8.170E-21 1.000 38 | 360.0 4.980E-21 1.000 39 | 365.0 3.020E-21 1.000 40 | 370.0 1.650E-21 1.000 41 | 375.0 9.800E-22 1.000 42 | 380.0 7.000E-22 1.000 43 | 385.0 3.900E-22 1.000 44 | 390.0 2.500E-22 1.000 45 | -------------------------------------------------------------------------------- /CCTM/src/twoway/twoway_header_data_module.F90: -------------------------------------------------------------------------------- 1 | !=============================================================================== 2 | ! Name: HEADER_DATA_MODULE 3 | ! Purpose: Define Met and Grid file constant header information 4 | ! Revised: 10 Apr 2007 Original version. (David Wong) 5 | !=============================================================================== 6 | 7 | module twoway_header_data_module 8 | 9 | integer, parameter :: max_nlays = 100 10 | 11 | type header_constant_data_record 12 | integer :: sdate 13 | integer :: stime 14 | integer :: nthik 15 | integer :: ncols 16 | integer :: nrows 17 | integer :: nlays 18 | integer :: gdtyp 19 | integer :: vtype 20 | real :: p_alp 21 | real :: p_bet 22 | real :: p_gam 23 | real :: xcent 24 | real :: ycent 25 | real :: xorig 26 | real :: yorig 27 | real :: xcell 28 | real :: ycell 29 | integer :: vgtyp 30 | real :: vgtop 31 | real :: vglvs (max_nlays + 1) 32 | character (len = 16) :: gdnam 33 | character (len = 16) :: grid_name 34 | end type header_constant_data_record 35 | 36 | TYPE(header_constant_data_record) :: ioapi_header 37 | 38 | end module twoway_header_data_module 39 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MI2_IUPAC10: -------------------------------------------------------------------------------- 1 | MI2_IUPAC10 2 | ! MI2 + HV = 2.0*I 3 | ! MI2 Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset PI12 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 205.0 4.070E-18 1.000 10 | 210.0 4.040E-18 1.000 11 | 215.0 3.220E-18 1.000 12 | 220.0 2.600E-18 1.000 13 | 225.0 1.980E-18 1.000 14 | 230.0 1.320E-18 1.000 15 | 235.0 1.090E-18 1.000 16 | 240.0 1.230E-18 1.000 17 | 245.0 1.500E-18 1.000 18 | 250.0 1.570E-18 1.000 19 | 255.0 1.400E-18 1.000 20 | 260.0 1.200E-18 1.000 21 | 265.0 1.300E-18 1.000 22 | 270.0 1.790E-18 1.000 23 | 275.0 2.550E-18 1.000 24 | 280.0 3.280E-18 1.000 25 | 285.0 3.730E-18 1.000 26 | 290.0 3.810E-18 1.000 27 | 295.0 3.720E-18 1.000 28 | 300.0 3.570E-18 1.000 29 | 305.0 3.380E-18 1.000 30 | 310.0 3.140E-18 1.000 31 | 315.0 2.800E-18 1.000 32 | 320.0 2.440E-18 1.000 33 | 325.0 2.030E-18 1.000 34 | 330.0 1.610E-18 1.000 35 | 335.0 1.200E-18 1.000 36 | 340.0 8.330E-19 1.000 37 | 345.0 5.370E-19 1.000 38 | 350.0 3.260E-19 1.000 39 | 355.0 1.920E-19 1.000 40 | 360.0 1.090E-19 1.000 41 | 365.0 6.050E-20 1.000 42 | 370.0 3.400E-20 1.000 43 | 375.0 1.930E-20 1.000 44 | 380.0 1.160E-20 1.000 45 | 385.0 7.700E-21 1.000 46 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CL2: -------------------------------------------------------------------------------- 1 | CL2 2 | ! CL2 + HV = 2 CL 3 | ! FROM IUPAC EVALUATION (1996) 4 | ! RECOMMEND UNIT QUANTUM YIELD 5 | ! 6 | Points (the mechanism evaluated with this format) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 260.0 2.000E-21 1.0000 10 | 270.0 8.200E-21 1.0000 11 | 280.0 2.600E-20 1.0000 12 | 290.0 6.200E-20 1.0000 13 | 300.0 1.190E-19 1.0000 14 | 310.0 1.850E-19 1.0000 15 | 320.0 2.370E-19 1.0000 16 | 330.0 2.550E-19 1.0000 17 | 340.0 2.350E-19 1.0000 18 | 350.0 1.880E-19 1.0000 19 | 360.0 1.320E-19 1.0000 20 | 370.0 8.400E-20 1.0000 21 | 380.0 5.000E-20 1.0000 22 | 390.0 2.900E-20 1.0000 23 | 400.0 1.800E-20 1.0000 24 | 410.0 1.300E-20 1.0000 25 | 420.0 9.600E-21 1.0000 26 | 430.0 7.300E-21 1.0000 27 | 440.0 5.400E-21 1.0000 28 | 450.0 3.800E-21 1.0000 29 | 460.0 2.600E-21 1.0000 30 | 470.0 1.600E-21 1.0000 31 | 480.0 0.000E+00 1.0000 32 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/FMCL_IUPAC04: -------------------------------------------------------------------------------- 1 | FMCL_IUPAC04 2 | ! FMCL + hv --> HCO + CL 3 | ! IUPAC Subcommittee on Gas Kinetic Data Evaluation; Data Sheet PCl28 Website: 15th December 2000 4 | ! Website: http://www.iupac-kinetic.ch.cam.ac.uk 5 | ! Reference: H. G. Libuda, F. Zabel, E. H. Fink, and K. H. Becker, J. Phys. Chem. 94, 5860 (1990) 6 | POINT 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0E-20 9 | 236.1 3.8 1.0 10 | 241.5 4.9 1.0 11 | 247.3 5.6 1.0 12 | 251.4 5.4 1.0 13 | 253.7 6.0 1.0 14 | 256.1 5.6 1.0 15 | 258.2 5.8 1.0 16 | 260.2 6.0 1.0 17 | 263.5 5.1 1.0 18 | 265.7 5.3 1.0 19 | 267.9 5.2 1.0 20 | 269.1 3.9 1.0 21 | 270.2 3.5 1.0 22 | 271.4 4.0 1.0 23 | 273.8 4.1 1.0 24 | 276.3 3.4 1.0 25 | 277.7 2.4 1.0 26 | 278.9 2.1 1.0 27 | 280.2 2.4 1.0 28 | 282.7 2.3 1.0 29 | 285.3 1.64 1.0 30 | 286.8 1.04 1.0 31 | 288.0 0.86 1.0 32 | 289.4 0.97 1.0 33 | 292.2 0.81 1.0 34 | 294.9 0.46 1.0 35 | 296.7 0.32 1.0 36 | 298.1 0.22 1.0 37 | 299.5 0.25 1.0 38 | 302.3 0.172 1.0 39 | 305.2 0.08 1.0 40 | 308.1 0.027 1.0 41 | 309.3 0.021 1.0 42 | 311.1 0.02 1.0 43 | 314.1 0.013 1.0 44 | 316.7 0.008 1.0 45 | 318.7 0.007 1.0 46 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/ORGNIT_RADM88: -------------------------------------------------------------------------------- 1 | ORGNIT_RADM88 2 | ! Organic Nitrate Photolysis (ORGNIT) 3 | ! CH3ONO2 + hv -> 0.2ALD + 0.8KET + HO2 + NO2 4 | ! Abs CS from Calvert and Pitts [1966]; 5 | ! QY assumed to be unity over UV absorption range 6 | ! format: wl, abs_cs, qy 7 | Beginning 8 | ! With FAC, units are (cm^2/molecule) 9 | FAC=1.0 10 | 263.158 2.905E-20 1.000E+00 11 | 266.667 2.664E-20 1.000E+00 12 | 270.270 2.365E-20 1.000E+00 13 | 273.973 2.013E-20 1.000E+00 14 | 277.778 1.636E-20 1.000E+00 15 | 281.690 1.294E-20 1.000E+00 16 | 285.714 9.924E-21 1.000E+00 17 | 289.855 7.491E-21 1.000E+00 18 | 294.118 5.617E-21 1.000E+00 19 | 298.500 4.068E-21 1.000E+00 20 | 302.500 3.282E-21 1.000E+00 21 | 303.500 2.976E-21 1.000E+00 22 | 304.500 2.680E-21 1.000E+00 23 | 305.500 2.442E-21 1.000E+00 24 | 306.500 2.214E-21 1.000E+00 25 | 307.500 1.986E-21 1.000E+00 26 | 308.500 1.758E-21 1.000E+00 27 | 309.500 1.539E-21 1.000E+00 28 | 310.500 1.376E-21 1.000E+00 29 | 311.500 1.222E-21 1.000E+00 30 | 312.500 1.068E-21 1.000E+00 31 | 313.500 9.140E-22 1.000E+00 32 | 314.500 6.872E-22 1.000E+00 33 | 317.500 4.037E-22 1.000E+00 34 | 322.500 1.900E-22 1.000E+00 35 | 327.500 0.000E+00 1.000E+00 36 | 37 | -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Emissions-Updates:-Environmental-Policy-Integrated-Climate-(EPIC)-Model.md: -------------------------------------------------------------------------------- 1 | ### Improved NaN traps for EPIC input files 2 | [Jesse Bash](mailto:bash.jesse@epa.gov), U.S. Environmental Protection Agency 3 | **Type of update**: Bug fix 4 | **Release Version/Date**: CMAQv5.5 5 | **Description**: CCTM crashes when debug flags are turned on if NaNs are present in EPIC input files and the current NaN traps do no work when running CCTM with debug compilation flags. The FORTRAN 2003 IEEE arithmetic function ieee_is_nan was implemented to correctly trap NaN in these inputs when running in debug mode. It is unclear why EPIC output contains sporadic NaNs, these are not visible Verdi or R and may have to do with a periodic error in specifying BADVAL3. 6 | 7 | **Significance and Impact**: Allows the user to run CCTM with bidirectional NH3 exchange with debug flags when EPIC data contains NaNs. Model runtime and results are unchanged. The FORTRAN 2003 IEEE arithmetic intrinsic functions are included in Intel 16+, PGI 16+ and GCC 5+ compiler versions. 8 | 9 | |Merge Commit | Internal record| 10 | |:------:|:-------:| 11 | |[Merge for PR#1036](https://github.com/USEPA/CMAQ/commit/68377cdbc6fcd4d4e8d0cb94e448fcb60b048fd7) | [PR#1036](https://github.com/USEPA/CMAQ_Dev/pull/1036) | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MIC_IUPAC10: -------------------------------------------------------------------------------- 1 | MIC_IUPAC10 2 | ! MIC + HV = I + CL 3 | ! MIC Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset PI10 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 205.0 1.220E-18 1.000 10 | 210.0 3.910E-19 1.000 11 | 215.0 1.030E-19 1.000 12 | 220.0 7.000E-20 1.000 13 | 225.0 9.060E-20 1.000 14 | 230.0 1.380E-19 1.000 15 | 235.0 2.120E-19 1.000 16 | 240.0 3.180E-19 1.000 17 | 245.0 4.560E-19 1.000 18 | 250.0 6.290E-19 1.000 19 | 255.0 8.400E-19 1.000 20 | 260.0 1.050E-18 1.000 21 | 265.0 1.210E-18 1.000 22 | 270.0 1.270E-18 1.000 23 | 275.0 1.200E-18 1.000 24 | 280.0 1.030E-18 1.000 25 | 285.0 8.070E-19 1.000 26 | 290.0 5.810E-19 1.000 27 | 295.0 3.980E-19 1.000 28 | 300.0 2.590E-19 1.000 29 | 305.0 1.670E-19 1.000 30 | 310.0 1.090E-19 1.000 31 | 315.0 7.160E-20 1.000 32 | 320.0 4.790E-20 1.000 33 | 325.0 3.230E-20 1.000 34 | 330.0 2.140E-20 1.000 35 | 335.0 1.400E-20 1.000 36 | 340.0 9.050E-21 1.000 37 | 345.0 5.690E-21 1.000 38 | 350.0 3.500E-21 1.000 39 | 355.0 2.250E-21 1.000 40 | 360.0 1.380E-21 1.000 41 | 365.0 8.100E-22 1.000 42 | 370.0 4.800E-22 1.000 43 | 375.0 2.700E-22 1.000 44 | 380.0 1.700E-22 1.000 45 | 385.0 8.000E-23 1.000 46 | 390.0 6.000E-23 1.000 47 | -------------------------------------------------------------------------------- /PYTOOLS/install/show_versions.py: -------------------------------------------------------------------------------- 1 | import sys 2 | import argparse 3 | try: 4 | # Python 3.8 or above 5 | from importlib.metadata import version 6 | except ImportError: 7 | # Python 3.6 8 | from importlib_metadata import version 9 | 10 | 11 | parser = argparse.ArgumentParser() 12 | parser.add_argument('requirements', nargs='*', help='requirements.txt file path(s)', default=['requirements.txt']) 13 | args = parser.parse_args() 14 | 15 | vinfo = sys.version_info 16 | 17 | def show(libname, vtxt, modifier): 18 | print(f'{libname:20s} {vtxt:12s} {modifier:12s}') 19 | 20 | show('Package', 'Version', 'Required') 21 | show('-'*20, '-'*12, '-'*12) 22 | show('Python', f'{vinfo.major}.{vinfo.minor}.{vinfo.micro}', '>= 3.6') 23 | 24 | for reqpath in args.requirements: 25 | with open(reqpath, 'r') as rf: 26 | reqtxt = rf.read().strip() 27 | for reqline in reqtxt.split('\n'): 28 | if ' ' not in reqline: 29 | libname = reqline 30 | modifier = '' 31 | else: 32 | si = reqline.find(' ') 33 | libname = reqline[:si] 34 | modifier = reqline[si:].strip() 35 | 36 | try: 37 | vtxt = version(libname) 38 | except Exception: 39 | vtxt = 'not found' 40 | show(libname, vtxt, modifier) 41 | -------------------------------------------------------------------------------- /DOCS/Users_Guide/Tutorials/CMAQ_UG_tutorial_running_benchmarks.md: -------------------------------------------------------------------------------- 1 | # CMAQ Benchmark Tutorials 2 | 3 | The following tutorials describe how to install and run the CMAQ test cases for the CMAQ base model, instrumented models, and coupled meteorology-chemistry models. 4 | These tutorials are designed to familiarize the user with the CMAQ suite of programs and to verify the installation of the software on your system via benchmarking. 5 | 6 | Benchmarking CMAQ is recommended in the following circumstances: installation by a new user; installation on a new server; following a new CMAQ release; 7 | following upgrades to your system kernel, Fortran/C compiler, netCDF library, or I/O API library. 8 | 9 | - [Running the CMAQ Base Model with CRACMM2 and STAGE](CMAQ_UG_tutorial_benchmark_cracmm2_stage.md) 10 | - [Running the CMAQ Base Model with CB6r5 and M3DRY or STAGE](CMAQ_UG_tutorial_benchmark.md) 11 | - [Running the CMAQ-ISAM Test Case](CMAQ_UG_tutorial_ISAM.md) 12 | - [Running the CMAQ-DDM-3D Test Case](CMAQ_UG_tutorial_DDM3D.md) 13 | - [Running the WRF-CMAQ Test Case](CMAQ_UG_tutorial_WRF-CMAQ_Benchmark.md) 14 | - [Build and run the MPAS-CMAQ Test Case using gcc](CMAQ_UG_tutorial_MPAS-CMAQ_Benchmark_gcc.md) 15 | - [Build and run the MPAS-CMAQ Test Case using intel](CMAQ_UG_tutorial_MPAS-CMAQ_Benchmark_intel.md) 16 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/ICL_IUPAC10: -------------------------------------------------------------------------------- 1 | ICL_IUPAC10 2 | ! ICL + HV = I + CL 3 | ! ICL Photolysis data (QY assumed) 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 220.0 2.130E-19 1.000 10 | 230.0 3.540E-19 1.000 11 | 240.0 4.400E-19 1.000 12 | 250.0 4.330E-19 1.000 13 | 260.0 3.530E-19 1.000 14 | 270.0 2.440E-19 1.000 15 | 280.0 1.540E-19 1.000 16 | 290.0 9.410E-20 1.000 17 | 300.0 6.080E-20 1.000 18 | 310.0 4.590E-20 1.000 19 | 320.0 4.010E-20 1.000 20 | 330.0 3.670E-20 1.000 21 | 340.0 3.290E-20 1.000 22 | 350.0 3.100E-20 1.000 23 | 360.0 3.520E-20 1.000 24 | 370.0 5.310E-20 1.000 25 | 380.0 8.790E-20 1.000 26 | 390.0 1.390E-19 1.000 27 | 400.0 1.900E-19 1.000 28 | 410.0 2.470E-19 1.000 29 | 420.0 2.890E-19 1.000 30 | 430.0 3.210E-19 1.000 31 | 440.0 3.540E-19 1.000 32 | 450.0 3.890E-19 1.000 33 | 460.0 4.170E-19 1.000 34 | 470.0 4.260E-19 1.000 35 | 480.0 4.090E-19 1.000 36 | 490.0 3.630E-19 1.000 37 | 500.0 2.940E-19 1.000 38 | 510.0 2.280E-19 1.000 39 | 520.0 1.640E-19 1.000 40 | 530.0 1.150E-19 1.000 41 | 540.0 8.000E-20 1.000 42 | 550.0 5.700E-20 1.000 43 | 560.0 4.320E-20 1.000 44 | 570.0 3.440E-20 1.000 45 | 580.0 2.830E-20 1.000 46 | 590.0 2.100E-20 1.000 47 | 600.0 1.760E-20 1.000 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/ISOPND_RACM2: -------------------------------------------------------------------------------- 1 | ISOPND_RACM2 2 | ! ISOPND + hv = ISOP + NO2: j(Pj_isopnd) ; 3 | ! j(Pj_onit1) ~ MCM n-propyl nitrate (n-C3H7ONO2) : J<53> 4 | ! Absorption x-section taken from IUPAC recommended 5 | ! Quantum Yield (φ) = 1.00 IUPAC recommended 6 | ! Made by Azimeh Zare Jul2016 7 | !Absorption cross-sections at 298 K 8 | Points 9 | ! With FAC, units are (cm^2/molecule) 10 | FAC=1.0 11 | 185.0 1.810E-17 1.000 12 | 190.0 1.800E-17 1.000 13 | 195.0 1.600E-17 1.000 14 | 200.0 1.260E-17 1.000 15 | 205.0 0.855E-17 1.000 16 | 210.0 0.489E-17 1.000 17 | 215.0 0.244E-17 1.000 18 | 220.0 0.105E-17 1.000 19 | 225.0 0.050E-17 1.000 20 | 230.0 0.027E-17 1.000 21 | 235.0 0.015E-17 1.000 22 | 240.0 8.900E-20 1.000 23 | 245.0 6.000E-20 1.000 24 | 250.0 4.800E-20 1.000 25 | 255.0 4.400E-20 1.000 26 | 260.0 4.000E-20 1.000 27 | 265.0 3.600E-20 1.000 28 | 270.0 3.200E-20 1.000 29 | 275.0 2.800E-20 1.000 30 | 280.0 2.300E-20 1.000 31 | 285.0 1.800E-20 1.000 32 | 290.0 1.300E-20 1.000 33 | 295.0 0.950E-20 1.000 34 | 300.0 0.570E-20 1.000 35 | 305.0 0.340E-20 1.000 36 | 310.0 0.190E-20 1.000 37 | 315.0 0.100E-20 1.000 38 | 320.0 0.053E-20 1.000 39 | 325.0 0.031E-20 1.000 40 | 330.0 0.022E-20 1.000 41 | 335.0 0.018E-20 1.000 42 | 340.0 0.016E-20 1.000 43 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/IONO2_06: -------------------------------------------------------------------------------- 1 | IONO2_06 2 | ! IONO2 + HV = I + NO3 3 | ! IONO2 Photolysis data (QY based on Sherwen et al., ACP 2016) 4 | ! Supplied by Golam Sarwar, QY reduced to 0.210 following Sherwen et al., ACP 2016 5 | ! Created from NASA/JPL dataset (JPL Publication 10-6) 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 245.0 1.210E-17 0.210 10 | 250.0 1.170E-17 0.210 11 | 255.0 1.060E-17 0.210 12 | 260.0 9.460E-18 0.210 13 | 265.0 8.800E-18 0.210 14 | 270.0 7.970E-18 0.210 15 | 275.0 7.720E-18 0.210 16 | 280.0 7.410E-18 0.210 17 | 285.0 6.910E-18 0.210 18 | 290.0 6.310E-18 0.210 19 | 295.0 5.770E-18 0.210 20 | 300.0 5.250E-18 0.210 21 | 305.0 4.950E-18 0.210 22 | 310.0 4.620E-18 0.210 23 | 315.0 4.410E-18 0.210 24 | 320.0 4.040E-18 0.210 25 | 325.0 3.960E-18 0.210 26 | 330.0 3.800E-18 0.210 27 | 335.0 3.740E-18 0.210 28 | 340.0 3.600E-18 0.210 29 | 345.0 3.480E-18 0.210 30 | 350.0 3.340E-18 0.210 31 | 355.0 3.160E-18 0.210 32 | 360.0 2.940E-18 0.210 33 | 365.0 2.700E-18 0.210 34 | 370.0 2.420E-18 0.210 35 | 375.0 2.130E-18 0.210 36 | 380.0 1.840E-18 0.210 37 | 385.0 1.530E-18 0.210 38 | 390.0 1.300E-18 0.210 39 | 395.0 1.030E-18 0.210 40 | 400.0 7.800E-19 0.210 41 | 405.0 6.050E-19 0.210 42 | 410.0 4.960E-19 0.210 43 | 415.0 4.160E-19 0.210 44 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/O3O1D_CBIV88: -------------------------------------------------------------------------------- 1 | O3O1D_CBIV88 2 | ! Ozone Photolysis to O1D (O3O1D) 3 | ! O3 + hv -> O2 + O(1D) 4 | ! Taken from Gery et al. (1988); Absorption CS calculated by Bass (1985); 5 | ! QY from Atkinson and Lloyd (1984). 6 | ! format: wl, abs_cs, qy 7 | Centered 8 | ! With FAC, units are (cm^2/molecule) 9 | FAC=1.0E-20 10 | 280 397.00 0.900 11 | 281 360.00 0.900 12 | 282 324.00 0.900 13 | 283 301.00 0.900 14 | 284 273.00 0.900 15 | 285 244.00 0.900 16 | 286 221.00 0.900 17 | 287 201.00 0.900 18 | 288 176.00 0.900 19 | 289 158.00 0.900 20 | 290 141.00 0.900 21 | 291 126.00 0.900 22 | 292 110.00 0.900 23 | 293 98.90 0.900 24 | 294 86.20 0.900 25 | 295 76.70 0.900 26 | 296 66.40 0.900 27 | 297 58.80 0.900 28 | 298 51.00 0.900 29 | 299 45.20 0.900 30 | 300 39.20 0.900 31 | 301 34.40 0.900 32 | 302 30.30 0.900 33 | 303 26.30 0.900 34 | 304 23.50 0.900 35 | 305 20.20 0.884 36 | 306 18.00 0.848 37 | 307 15.60 0.800 38 | 308 13.60 0.740 39 | 309 12.30 0.660 40 | 310 10.30 0.560 41 | 311 9.27 0.450 42 | 312 8.00 0.340 43 | 313 6.92 0.250 44 | 314 6.29 0.180 45 | 315 5.22 0.120 46 | 316 4.78 0.080 47 | 317 4.04 0.050 48 | 318 3.72 0.020 49 | 319 2.91 0.000 50 | -------------------------------------------------------------------------------- /UTIL/create_ebi/template_RXNSU_OPT/copyright.txt: -------------------------------------------------------------------------------- 1 | C*********************************************************************** 2 | C Portions of Models-3/CMAQ software were developed or based on * 3 | C information from various groups: Federal Government employees, * 4 | C contractors working on a United States Government contract, and * 5 | C non-Federal sources (including research institutions). These * 6 | C research institutions have given the Government permission to * 7 | C use, prepare derivative works, and distribute copies of their * 8 | C work in Models-3/CMAQ to the public and to permit others to do * 9 | C so. EPA therefore grants similar permissions for use of the * 10 | C Models-3/CMAQ software, but users are requested to provide copies * 11 | C of derivative works to the Government without restrictions as to * 12 | C use by others. Users are responsible for acquiring their own * 13 | C copies of commercial software associated with Models-3/CMAQ and * 14 | C for complying with vendor requirements. Software copyrights by * 15 | C the MCNC Environmental Modeling Center are used with their * 16 | C permissions subject to the above restrictions. * 17 | C*********************************************************************** 18 | -------------------------------------------------------------------------------- /PREP/README.md: -------------------------------------------------------------------------------- 1 | Pre-processing Tools 2 | ======== 3 | 4 | ## Overview 5 | The following programs are provided to process and prepare input data for the CMAQ Chemistry Transport Model. Documentation for these programs is provided in README files within each foler. 6 | 7 | ## Pre-processing Programs 8 | * **[bcon](bcon/README.md)**: Prepares lateral chemical boundary conditions (BCs) for CCTM from either ASCII vertical profiles or from an existing CCTM output concentration (CONC) file 9 | * **[icon](icon/README.md)**: Prepares chemical initial conditions (ICs) for CCTM from either ASCII vertical profiles or from an existing CCTM output concentration (CONC) file 10 | data 11 | * **[mcip](mcip/README.md)**: Processes meteorological model output from either MM5 or WRF-ARW model into I/O API-formatted files that are compatible with CMAQ and SMOKE 12 | * **[create_omi](create_omi/README.md)**: Produces an OMI input file that supports CMAQ CCTM's in-line calculation of photolysis rates. 13 | * **[dmschlo](../PYTOOLS/dmschlo/README.md)**: Prepares OCEAN file with DMS and CHLO variables required by DMS and halogen chemistry. 14 | * **[shp2cmaq](../PYTOOLS/shp2cmaq/README.md)**: Creates a CMAQ-ready grid mask from a shape file that can be used for defining regions and region families with DESID and using geographic source regions when running CMAQ-ISAM. 15 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/IBR_IUPAC10: -------------------------------------------------------------------------------- 1 | IBR_IUPAC10 2 | ! IBR + HV = I + BR 3 | ! IBR Photolysis data (QY assumed) 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 220.0 3.590E-20 1.000 10 | 230.0 5.700E-20 1.000 11 | 240.0 1.021E-19 1.000 12 | 250.0 1.671E-19 1.000 13 | 260.0 2.145E-19 1.000 14 | 270.0 2.309E-19 1.000 15 | 280.0 2.110E-19 1.000 16 | 290.0 1.682E-19 1.000 17 | 300.0 1.243E-19 1.000 18 | 310.0 7.950E-20 1.000 19 | 320.0 5.390E-20 1.000 20 | 330.0 3.360E-20 1.000 21 | 340.0 2.140E-20 1.000 22 | 350.0 1.450E-20 1.000 23 | 360.0 1.530E-20 1.000 24 | 370.0 2.370E-20 1.000 25 | 380.0 4.170E-20 1.000 26 | 390.0 6.960E-20 1.000 27 | 400.0 1.200E-19 1.000 28 | 410.0 2.046E-19 1.000 29 | 420.0 3.173E-19 1.000 30 | 430.0 4.477E-19 1.000 31 | 440.0 5.869E-19 1.000 32 | 450.0 7.192E-19 1.000 33 | 460.0 8.518E-19 1.000 34 | 470.0 9.849E-19 1.000 35 | 480.0 1.111E-18 1.000 36 | 490.0 1.198E-18 1.000 37 | 500.0 1.216E-18 1.000 38 | 510.0 1.159E-18 1.000 39 | 520.0 1.030E-18 1.000 40 | 530.0 8.583E-19 1.000 41 | 540.0 6.752E-19 1.000 42 | 550.0 5.234E-19 1.000 43 | 560.0 3.663E-19 1.000 44 | 570.0 2.722E-19 1.000 45 | 580.0 1.988E-19 1.000 46 | 590.0 1.457E-19 1.000 47 | 600.0 1.132E-19 1.000 -------------------------------------------------------------------------------- /PREP/bcon/src/profile/legacy_PM_toxics_profile.csv: -------------------------------------------------------------------------------- 1 | # 2 | # 3 | # Aerosol toxics species for multipollutant mechanism, extracted from 4 | # legacy ICON profile 5 | # Profile Source: Bill Hutzell (hutzell.bill@epa.gov) 6 | # 7 | # Vertical layers: 6 8 | # Meteorological fields: 9 | # ZF taken from CMAQ science document, page 12-22 (EPA/600/R-99/030) 10 | # ZH calculated from ZF 11 | # Chemical mechanism: Multipollutant 12 | # Top level pressure: assumed to be 100mb 13 | # The vertical sigma levels: 1.00,0.98,0.93,0.84,0.60,0.30,0.00 14 | VNAME,UNITS,LAYER01,LAYER02,LAYER03,LAYER04,LAYER05,LAYER06 15 | "ZF","m",152.0,544.0,1289.0,3600.0,7621.0,16069.0 16 | "ZH","m",76.0,348.0,916.5,2444.5,5610.5,11845.0 17 | "ANIJ","ug m-3",9.508E-05,8.090E-05,5.332E-05,2.387E-05,5.912E-06,5.912E-06 18 | "ACR_IIIJ","ug m-3",7.500E-06,6.382E-06,4.206E-06,1.883E-06,4.663E-07,4.663E-07 19 | "ACR_VIJ","ug m-3",7.500E-06,6.382E-06,4.206E-06,1.883E-06,4.663E-07,4.663E-07 20 | "APBJ","ug m-3",1.409E-05,1.199E-05,7.899E-06,3.536E-06,8.758E-07,8.758E-07 21 | "APBK","ug m-3",9.390E-06,7.990E-06,5.266E-06,2.357E-06,5.839E-07,5.839E-07 22 | "ACDJ","ug m-3",1.761E-06,1.498E-06,9.874E-07,4.420E-07,1.095E-07,1.095E-07 23 | "AMN_HAPSJ","ug m-3",9.390E-05,7.990E-05,5.266E-05,2.357E-05,5.839E-06,5.839E-06 24 | "AMN_HAPSK","ug m-3",1.409E-04,1.199E-04,7.899E-05,3.536E-05,8.758E-06,8.758E-06 25 | -------------------------------------------------------------------------------- /CCTM/src/aero/aero6/README.md: -------------------------------------------------------------------------------- 1 | CMAQv5.2 Aerosol Processing Module (Aero6) 2 | ========================================== 3 | 4 | Aerosol calculations the CMAQ aero6 module account for several relevant microphysical processes: emission, condensation, evaporation, coagulation, new particle formation, and chemistry. The size distribution of particles is conceptualized in this module as the sum of three log-normal modes: Aitken, Accumulation and Coarse. The magnitude and shape of these modes are predicted in time by tracking the magnitude of three moments: 0th (equivalent to number), 2nd (proportional to surface area) and 3rd (proportional to volume or mass). 5 | 6 | Brief Summary on Inorganic chemistry 7 | 8 | Brief Summary on Organic Chemistry 9 | 10 | Brief Summary on Sea Salt Emissions 11 | 12 | Brief Summary on Dust Emissions 13 | 14 | Brief Summary on coagulation 15 | 16 | Brief Summary on New particle Formation 17 | 18 | ----- 19 | # CMAQv5.2 Aerosol Module Release Notes 20 | 21 | The aerosol processing module in CMAQv5.2 includes several important revisions over CMAQv5.1, most noticeably to the representation of dust and organic aerosol (OA). 22 | 23 | * [Aerosol Transmission Factors](../../docs/Release_Notes/Aerosol_Transmission_Factors.md) 24 | * [Update of Gas-Phase Deposition Rates](../../docs/Release_Notes/Gas-Phase_Dep_H2O2_HACET_OrgNtr_s07tic_Species.md) 25 | 26 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BRCL: -------------------------------------------------------------------------------- 1 | BRCL 2 | ! BRCL + HV = BR + CL 3 | ! BRCL Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset 19-Mar-2014 11:00 6 | Points (These data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 200.0 2.950E-20 1.000 10 | 210.0 4.270E-20 1.000 11 | 220.0 6.310E-20 1.000 12 | 230.0 6.610E-20 1.000 13 | 240.0 5.620E-20 1.000 14 | 250.0 4.070E-20 1.000 15 | 260.0 5.500E-20 1.000 16 | 270.0 1.290E-20 1.000 17 | 280.0 0.660E-20 1.000 18 | 290.0 0.390E-20 1.000 19 | 300.0 0.560E-20 1.000 20 | 310.0 1.510E-20 1.000 21 | 320.0 4.070E-20 1.000 22 | 330.0 9.120E-20 1.000 23 | 340.0 17.00E-20 1.000 24 | 350.0 28.18E-20 1.000 25 | 360.0 34.67E-20 1.000 26 | 370.0 41.69E-20 1.000 27 | 380.0 39.81E-20 1.000 28 | 390.0 33.88E-20 1.000 29 | 400.0 28.18E-20 1.000 30 | 410.0 22.39E-20 1.000 31 | 420.0 17.78E-20 1.000 32 | 430.0 14.45E-20 1.000 33 | 440.0 12.59E-20 1.000 34 | 450.0 10.72E-20 1.000 35 | 460.0 9.330E-20 1.000 36 | 470.0 7.940E-20 1.000 37 | 480.0 6.310E-20 1.000 38 | 490.0 5.010E-20 1.000 39 | 500.0 3.390E-20 1.000 40 | 510.0 2.630E-20 1.000 41 | 520.0 1.660E-20 1.000 42 | 530.0 1.100E-20 1.000 43 | 540.0 0.660E-20 1.000 44 | 550.0 0.410E-20 1.000 45 | 560.0 0.250E-20 1.000 46 | 570.0 0.144E-20 1.000 47 | 580.0 0.832E-20 1.000 48 | 590.0 0.048E-20 1.000 49 | 600.0 0.025E-20 1.000 50 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BRCL_IUPAC10: -------------------------------------------------------------------------------- 1 | BRCL_IUPAC10 2 | ! BRCL + HV = BR + CL 3 | ! BRCL Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset PBr3 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 200.0 2.950E-20 1.000 10 | 210.0 4.270E-20 1.000 11 | 220.0 6.310E-20 1.000 12 | 230.0 6.610E-20 1.000 13 | 240.0 5.620E-20 1.000 14 | 250.0 4.070E-20 1.000 15 | 260.0 5.500E-20 1.000 16 | 270.0 1.290E-20 1.000 17 | 280.0 6.600E-21 1.000 18 | 290.0 3.900E-21 1.000 19 | 300.0 5.600E-21 1.000 20 | 310.0 1.510E-20 1.000 21 | 320.0 4.070E-20 1.000 22 | 330.0 9.120E-20 1.000 23 | 340.0 1.700E-19 1.000 24 | 350.0 2.818E-19 1.000 25 | 360.0 3.467E-19 1.000 26 | 370.0 4.169E-19 1.000 27 | 380.0 3.981E-19 1.000 28 | 390.0 3.388E-19 1.000 29 | 400.0 2.818E-19 1.000 30 | 410.0 2.239E-19 1.000 31 | 420.0 1.778E-19 1.000 32 | 430.0 1.445E-19 1.000 33 | 440.0 1.259E-19 1.000 34 | 450.0 1.072E-19 1.000 35 | 460.0 9.330E-20 1.000 36 | 470.0 7.940E-20 1.000 37 | 480.0 6.310E-20 1.000 38 | 490.0 5.010E-20 1.000 39 | 500.0 3.390E-20 1.000 40 | 510.0 2.630E-20 1.000 41 | 520.0 1.660E-20 1.000 42 | 530.0 1.100E-20 1.000 43 | 540.0 6.600E-21 1.000 44 | 550.0 4.100E-21 1.000 45 | 560.0 2.500E-21 1.000 46 | 570.0 1.440E-21 1.000 47 | 580.0 8.320E-21 1.000 48 | 590.0 4.800E-22 1.000 49 | 600.0 2.500E-22 1.000 50 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/MEPX_IUPAC10: -------------------------------------------------------------------------------- 1 | MEPX_IUPAC10 2 | ! j(MEPX) IUPAC(2010) CH3OOH 3 | ! MEPX = MEO2 + RO2 + OH 4 | ! From IUPAC Subcommittee on Gas Kinetic Data Evaluation 5 | ! Data Sheet P12, updated 16th May, 2002 6 | !These are point values 7 | Begining (the mechanism evaluated with this format) 8 | !WL(nm) XSEC(cm2) QY 9 | FAC=1.0 10 | 210.0 3.120E-19 1.000 11 | 215.0 2.090E-19 1.000 12 | 220.0 1.540E-19 1.000 13 | 225.0 1.220E-19 1.000 14 | 230.0 9.620E-20 1.000 15 | 235.0 7.610E-20 1.000 16 | 240.0 6.050E-20 1.000 17 | 245.0 4.880E-20 1.000 18 | 250.0 3.980E-20 1.000 19 | 255.0 3.230E-20 1.000 20 | 260.0 2.560E-20 1.000 21 | 265.0 2.110E-20 1.000 22 | 270.0 1.700E-20 1.000 23 | 275.0 1.390E-20 1.000 24 | 280.0 1.090E-20 1.000 25 | 285.0 8.630E-21 1.000 26 | 290.0 6.910E-21 1.000 27 | 295.0 5.510E-21 1.000 28 | 300.0 4.130E-21 1.000 29 | 305.0 3.130E-21 1.000 30 | 310.0 2.390E-21 1.000 31 | 315.0 1.820E-21 1.000 32 | 320.0 1.370E-21 1.000 33 | 325.0 1.050E-21 1.000 34 | 330.0 7.900E-22 1.000 35 | 335.0 6.100E-22 1.000 36 | 340.0 4.700E-22 1.000 37 | 345.0 3.500E-22 1.000 38 | 350.0 2.700E-22 1.000 39 | 355.0 2.100E-22 1.000 40 | 360.0 1.600E-22 1.000 41 | 365.0 1.200E-22 1.000 42 | 366.0 0.000E+00 1.000 43 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BRCL_IUPAC2014: -------------------------------------------------------------------------------- 1 | BRCL 2 | ! BRCL + HV = BR + CL 3 | ! BRCL Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset PBr8 19-Mar-2014 11:00 6 | Points (These data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 200.0 2.950E-20 1.000 10 | 210.0 4.270E-20 1.000 11 | 220.0 6.310E-20 1.000 12 | 230.0 6.610E-20 1.000 13 | 240.0 5.620E-20 1.000 14 | 250.0 4.070E-20 1.000 15 | 260.0 5.500E-20 1.000 16 | 270.0 1.290E-20 1.000 17 | 280.0 0.660E-20 1.000 18 | 290.0 0.390E-20 1.000 19 | 300.0 0.560E-20 1.000 20 | 310.0 1.510E-20 1.000 21 | 320.0 4.070E-20 1.000 22 | 330.0 9.120E-20 1.000 23 | 340.0 17.00E-20 1.000 24 | 350.0 28.18E-20 1.000 25 | 360.0 34.67E-20 1.000 26 | 370.0 41.69E-20 1.000 27 | 380.0 39.81E-20 1.000 28 | 390.0 33.88E-20 1.000 29 | 400.0 28.18E-20 1.000 30 | 410.0 22.39E-20 1.000 31 | 420.0 17.78E-20 1.000 32 | 430.0 14.45E-20 1.000 33 | 440.0 12.59E-20 1.000 34 | 450.0 10.72E-20 1.000 35 | 460.0 9.330E-20 1.000 36 | 470.0 7.940E-20 1.000 37 | 480.0 6.310E-20 1.000 38 | 490.0 5.010E-20 1.000 39 | 500.0 3.390E-20 1.000 40 | 510.0 2.630E-20 1.000 41 | 520.0 1.660E-20 1.000 42 | 530.0 1.100E-20 1.000 43 | 540.0 0.660E-20 1.000 44 | 550.0 0.410E-20 1.000 45 | 560.0 0.250E-20 1.000 46 | 570.0 0.144E-20 1.000 47 | 580.0 0.832E-20 1.000 48 | 590.0 0.048E-20 1.000 49 | 600.0 0.025E-20 1.000 50 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/ice_clouds/fu96.ext: -------------------------------------------------------------------------------- 1 | # Q. Fu, An Accurate Parameterization of the Solar Radiative 2 | # Properties of Cirrus Clouds for Climate Models, Journal of 3 | # Climate 9, 2058-2082, 1996. 4 | # 5 | # Extinction coefficient b = IWC * (a0 + a1/D), eq. 3.9a 6 | # 7 | # Band limit a0 a1 8 | # (um) 9 | # 10 | 0.25 0.30 -0.236447e-03 0.253817e+01 11 | 0.30 0.33 -0.266955e-03 0.254179e+01 12 | 0.33 0.36 -0.293599e-03 0.254540e+01 13 | 0.36 0.40 -0.258858e-03 0.253815e+01 14 | 0.40 0.44 -0.106451e-03 0.252684e+01 15 | 0.44 0.48 0.129121e-03 0.250410e+01 16 | 0.48 0.52 -0.945458e-04 0.252061e+01 17 | 0.52 0.57 -0.303108e-04 0.251805e+01 18 | 0.57 0.64 0.982244e-04 0.250875e+01 19 | 0.64 0.69 0.161983e-03 0.250746e+01 20 | 0.69 0.75 -0.304991e-03 0.254412e+01 21 | 0.75 0.78 0.226539e-03 0.249909e+01 22 | 0.78 0.87 0.810443e-04 0.251619e+01 23 | 0.87 1.00 0.737638e-04 0.251051e+01 24 | 1.00 1.10 -0.614288e-03 0.256520e+01 25 | 1.10 1.19 0.413595e-03 0.248783e+01 26 | 1.19 1.41 0.651659e-04 0.251660e+01 27 | 1.41 1.53 -0.805155e-03 0.257600e+01 28 | 1.53 1.64 0.644675e-03 0.247060e+01 29 | 1.64 2.13 -0.837325e-04 0.252504e+01 30 | 2.13 2.38 0.489477e-03 0.248776e+01 31 | 2.38 2.91 0.234245e-03 0.248573e+01 32 | 2.91 3.42 0.297295e-03 0.248895e+01 33 | 3.42 4.00 0.187598e-03 0.251396e+01 34 | 4.00 4.99 -0.254823e-03 0.252909e+01 35 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/H2O2_IUPAC10: -------------------------------------------------------------------------------- 1 | H2O2_IUPAC10 2 | ! j(H2O2) IUPAC(2010) 3 | ! H2O2 = 2 OH 4 | ! From IUPAC Subcommittee on Gas Kinetic Data Evaluation 5 | ! Data Sheet PHOx2, updated 2 Oct, 2001 6 | !These are point values 7 | Begining (the mechanism evaluated with this format) 8 | !WL(nm) XSEC(cm2) QY 9 | FAC=1.0 10 | 190.0 6.720E-19 1.000 11 | 195.0 5.630E-19 1.000 12 | 200.0 4.750E-19 1.000 13 | 205.0 4.080E-19 1.000 14 | 210.0 3.570E-19 1.000 15 | 215.0 3.070E-19 1.000 16 | 220.0 2.580E-19 1.000 17 | 225.0 2.170E-19 1.000 18 | 230.0 1.820E-19 1.000 19 | 235.0 1.500E-19 1.000 20 | 240.0 1.240E-19 1.000 21 | 245.0 1.020E-19 1.000 22 | 250.0 8.300E-20 1.000 23 | 255.0 6.700E-20 1.000 24 | 260.0 5.300E-20 1.000 25 | 265.0 4.200E-20 1.000 26 | 270.0 3.300E-20 1.000 27 | 275.0 2.600E-20 1.000 28 | 280.0 2.000E-20 1.000 29 | 285.0 1.500E-20 1.000 30 | 290.0 1.200E-20 1.000 31 | 295.0 9.000E-21 1.000 32 | 300.0 6.800E-21 1.000 33 | 305.0 5.100E-21 1.000 34 | 310.0 3.900E-21 1.000 35 | 315.0 2.900E-21 1.000 36 | 320.0 2.200E-21 1.000 37 | 325.0 1.600E-21 1.000 38 | 330.0 1.300E-21 1.000 39 | 335.0 1.000E-21 1.000 40 | 340.0 7.000E-22 1.000 41 | 345.0 5.000E-22 1.000 42 | 350.0 4.000E-22 1.000 43 | 355.0 0.000E+00 1.000 44 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HNO3_IUPAC10: -------------------------------------------------------------------------------- 1 | HNO3_IUPAC10 2 | ! j(HNO3) IUPAC(2010) 3 | ! HNO3 = OH + NO2 4 | ! From IUPAC Subcommittee on Gas Kinetic Data Evaluation 5 | ! Data Sheet PNOx2, updated 16th Jul, 2001 6 | !These are point values 7 | Begining (the mechanism evaluated with this format) 8 | !WL(nm) XSEC(cm2) QY 9 | FAC=1.0 10 | 190.0 1.360E-17 1.000 11 | 195.0 1.020E-17 1.000 12 | 200.0 5.880E-18 1.000 13 | 205.0 2.800E-18 1.000 14 | 210.0 1.040E-18 1.000 15 | 215.0 3.650E-19 1.000 16 | 220.0 1.490E-19 1.000 17 | 225.0 8.810E-20 1.000 18 | 230.0 5.750E-20 1.000 19 | 235.0 3.750E-20 1.000 20 | 240.0 2.580E-20 1.000 21 | 245.0 2.110E-20 1.000 22 | 250.0 1.970E-20 1.000 23 | 255.0 1.950E-20 1.000 24 | 260.0 1.910E-20 1.000 25 | 265.0 1.800E-20 1.000 26 | 270.0 1.620E-20 1.000 27 | 275.0 1.380E-20 1.000 28 | 280.0 1.120E-20 1.000 29 | 285.0 8.580E-21 1.000 30 | 290.0 6.150E-21 1.000 31 | 295.0 4.120E-21 1.000 32 | 300.0 2.630E-21 1.000 33 | 305.0 1.500E-21 1.000 34 | 310.0 8.100E-22 1.000 35 | 315.0 4.100E-22 1.000 36 | 320.0 2.000E-22 1.000 37 | 325.0 9.500E-23 1.000 38 | 330.0 4.300E-23 1.000 39 | 335.0 2.200E-23 1.000 40 | 340.0 1.000E-23 1.000 41 | 345.0 6.000E-24 1.000 42 | 350.0 4.000E-24 1.000 43 | 351.0 0.000E+00 1.000 44 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/H2O2: -------------------------------------------------------------------------------- 1 | H2O2 2 | ! H2O2 + HV = 2 OH 3 | ! IUPAC (1997) Recommended. 4 | Points (the mechanism evaluated with this format) 5 | ! With FAC, units are (cm^2/molecule) 6 | FAC=1.0 7 | 190.0 6.720E-19 1.0000 8 | 195.0 5.630E-19 1.0000 9 | 200.0 4.750E-19 1.0000 10 | 205.0 4.080E-19 1.0000 11 | 210.0 3.570E-19 1.0000 12 | 215.0 3.070E-19 1.0000 13 | 220.0 2.580E-19 1.0000 14 | 225.0 2.170E-19 1.0000 15 | 230.0 1.820E-19 1.0000 16 | 235.0 1.500E-19 1.0000 17 | 240.0 1.240E-19 1.0000 18 | 245.0 1.020E-19 1.0000 19 | 250.0 8.300E-20 1.0000 20 | 255.0 6.700E-20 1.0000 21 | 260.0 5.300E-20 1.0000 22 | 265.0 4.200E-20 1.0000 23 | 270.0 3.300E-20 1.0000 24 | 275.0 2.600E-20 1.0000 25 | 280.0 2.000E-20 1.0000 26 | 285.0 1.500E-20 1.0000 27 | 290.0 1.200E-20 1.0000 28 | 295.0 9.000E-21 1.0000 29 | 300.0 6.800E-21 1.0000 30 | 305.0 5.100E-21 1.0000 31 | 310.0 3.900E-21 1.0000 32 | 315.0 2.900E-21 1.0000 33 | 320.0 2.200E-21 1.0000 34 | 325.0 1.600E-21 1.0000 35 | 330.0 1.300E-21 1.0000 36 | 335.0 1.000E-21 1.0000 37 | 340.0 7.000E-22 1.0000 38 | 345.0 5.000E-22 1.0000 39 | 350.0 4.000E-22 1.0000 40 | 355.0 0.000E+00 1.0000 41 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HNO3: -------------------------------------------------------------------------------- 1 | HNO3 2 | ! HNO3 + HV = products 3 | ! IUPAC (1997) Recommendation 4 | Points (the mechanism evaluated with this format) 5 | ! With FAC, units are (cm^2/molecule) 6 | FAC=1.0 7 | 190.0 1.360E-17 1.0000 8 | 195.0 1.020E-17 1.0000 9 | 200.0 5.880E-18 1.0000 10 | 205.0 2.800E-18 1.0000 11 | 210.0 1.040E-18 1.0000 12 | 215.0 3.650E-19 1.0000 13 | 220.0 1.490E-19 1.0000 14 | 225.0 8.810E-20 1.0000 15 | 230.0 5.750E-20 1.0000 16 | 235.0 3.750E-20 1.0000 17 | 240.0 2.580E-20 1.0000 18 | 245.0 2.110E-20 1.0000 19 | 250.0 1.970E-20 1.0000 20 | 255.0 1.950E-20 1.0000 21 | 260.0 1.910E-20 1.0000 22 | 265.0 1.800E-20 1.0000 23 | 270.0 1.620E-20 1.0000 24 | 275.0 1.380E-20 1.0000 25 | 280.0 1.120E-20 1.0000 26 | 285.0 8.580E-21 1.0000 27 | 290.0 6.150E-21 1.0000 28 | 295.0 4.120E-21 1.0000 29 | 300.0 2.630E-21 1.0000 30 | 305.0 1.500E-21 1.0000 31 | 310.0 8.100E-22 1.0000 32 | 315.0 4.100E-22 1.0000 33 | 320.0 2.000E-22 1.0000 34 | 325.0 9.500E-23 1.0000 35 | 330.0 4.300E-23 1.0000 36 | 335.0 2.200E-23 1.0000 37 | 340.0 1.000E-23 1.0000 38 | 345.0 6.000E-24 1.0000 39 | 350.0 4.000E-24 1.0000 40 | 355.0 0.000E+00 1.0000 41 | -------------------------------------------------------------------------------- /UTIL/nml/scripts/nml2csv.csh: -------------------------------------------------------------------------------- 1 | #! /bin/csh -f 2 | 3 | # RCS file, release, date & time of last delta, author, state, [and locker] 4 | # $Header$ 5 | 6 | #> nml2csv - csh script to revert a sednml Namelist file back to a .csv 7 | #> requirements: the nml Namelist file must be in the subdir; i.e. this script 8 | #> does not support a file path. 9 | 10 | #set echo 11 | 12 | if ( $#argv == 0 ) then 13 | echo " usage: nml2csv " 14 | exit 15 | endif 16 | 17 | set File = $argv[1] 18 | set Name = $File:r 19 | 20 | if ( -e ${Name}.csv ) then 21 | echo " ${Name}.csv exists. Not overwriting" 22 | exit 23 | endif 24 | 25 | pwd 26 | echo " Converting $File" 27 | 28 | #> conversion 29 | sed \ 30 | -e '1,4d' \ 31 | -e 's/'^!'//' \ 32 | -e "1\!s/\s//g"\ 33 | -e '/\//,/$/d' \ 34 | -e "s/'//g" \ 35 | -e 's/,$//' \ 36 | $File > ! /tmp/${Name}_$$ 37 | 38 | /bin/mv /tmp/${Name}_$$ $Name.csv 39 | 40 | exit 41 | 42 | #> description 43 | #> sed \ 44 | #> -e '1,4d' <- delete the first 4 lines of namelist file 45 | #> -e 's/'^!'//' <- delte the comment symbole (!) 46 | #> -e "1\!s/\s//g" <- delete all spaces existing in the file 47 | #> -e '/\//,/$/d' <- delete the last lines (starting at "/") 48 | #> -e "s/'//g" <- remove all "'"s 49 | #> -e 's/,$//' <- remove last "," in all lines 50 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HOI_IUPAC10: -------------------------------------------------------------------------------- 1 | HOI_IUPAC10 2 | ! HOI + HV = I + OH 3 | ! HOI Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from IUPAC dataset PI2 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 280.0 7.700E-22 1.000 10 | 285.0 2.260E-21 1.000 11 | 290.0 5.890E-21 1.000 12 | 295.0 1.370E-20 1.000 13 | 300.0 2.860E-20 1.000 14 | 305.0 5.410E-20 1.000 15 | 310.0 9.260E-20 1.000 16 | 315.0 1.450E-19 1.000 17 | 320.0 2.070E-19 1.000 18 | 325.0 2.720E-19 1.000 19 | 330.0 3.290E-19 1.000 20 | 335.0 3.700E-19 1.000 21 | 340.0 3.850E-19 1.000 22 | 345.0 3.770E-19 1.000 23 | 350.0 3.470E-19 1.000 24 | 355.0 3.040E-19 1.000 25 | 360.0 2.580E-19 1.000 26 | 365.0 2.210E-19 1.000 27 | 370.0 1.980E-19 1.000 28 | 375.0 1.940E-19 1.000 29 | 380.0 2.070E-19 1.000 30 | 385.0 2.330E-19 1.000 31 | 390.0 2.660E-19 1.000 32 | 395.0 2.980E-19 1.000 33 | 400.0 3.220E-19 1.000 34 | 405.0 3.320E-19 1.000 35 | 410.0 3.270E-19 1.000 36 | 415.0 3.070E-19 1.000 37 | 420.0 2.750E-19 1.000 38 | 425.0 2.350E-19 1.000 39 | 430.0 1.920E-19 1.000 40 | 435.0 1.500E-19 1.000 41 | 440.0 1.130E-19 1.000 42 | 445.0 8.130E-20 1.000 43 | 450.0 5.630E-20 1.000 44 | 455.0 3.760E-20 1.000 45 | 460.0 2.420E-20 1.000 46 | 465.0 1.500E-20 1.000 47 | 470.0 9.040E-21 1.000 48 | 475.0 5.250E-21 1.000 49 | 480.0 2.960E-21 1.000 50 | 485.0 1.610E-21 1.000 51 | 490.0 8.600E-22 1.000 52 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CH3OOH_MCMv32: -------------------------------------------------------------------------------- 1 | CH3OOH_MCMv32 2 | !methyl peroxide (CH3OOH) absorption spectrum (1 bar, 298 K) 3 | !IUPAC 2005 Recommendation 4 | !http://www.iupac-kinetic.ch.cam.ac.uk 5 | !Cross-section and Quantum yield 6 | !G. L. Vaghjiani and A. R. Ravishankara, J. Geophys. Res. 94, 3487 (1989) 7 | !G. L. Vaghjiani and A. R. Ravishankara, J. Chem. Phys. 92, 996 (1990) 8 | ! 9 | !phi (CH3O + OH) = unity at wavelengths > 290 nm 10 | ! 11 | !wavelength (nm) sigma qy 12 | Points (the mechanism evaluated with this format) 13 | ! With FAC, units are (cm^2/molecule) 14 | FAC=1.0 15 | 210.0 31.2E-20 1.000 16 | 215.0 20.9E-20 1.000 17 | 220.0 15.4E-20 1.000 18 | 225.0 12.2E-20 1.000 19 | 230.0 9.62E-20 1.000 20 | 235.0 7.61E-20 1.000 21 | 240.0 6.05E-20 1.000 22 | 245.0 4.88E-20 1.000 23 | 250.0 3.98E-20 1.000 24 | 255.0 3.23E-20 1.000 25 | 260.0 2.56E-20 1.000 26 | 265.0 2.11E-20 1.000 27 | 270.0 1.70E-20 1.000 28 | 275.0 1.39E-20 1.000 29 | 280.0 1.09E-20 1.000 30 | 285.0 8.63E-21 1.000 31 | 290.0 6.91E-21 1.000 32 | 295.0 5.51E-21 1.000 33 | 300.0 4.13E-21 1.000 34 | 305.0 3.13E-21 1.000 35 | 310.0 2.39E-21 1.000 36 | 315.0 1.82E-21 1.000 37 | 320.0 1.37E-21 1.000 38 | 325.0 1.05E-21 1.000 39 | 330.0 7.90E-22 1.000 40 | 335.0 6.10E-22 1.000 41 | 340.0 4.70E-22 1.000 42 | 345.0 3.50E-22 1.000 43 | 350.0 2.70E-22 1.000 44 | 355.0 2.10E-22 1.000 45 | 360.0 1.60E-22 1.000 46 | 365.0 1.20E-22 1.000 47 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CLONO: -------------------------------------------------------------------------------- 1 | CLONO 2 | ! CLONO + HV = CL + NO2 3 | ! FROM IUPAC EVALUATION (1996) 4 | Points (the mechanism evaluated with this format) 5 | ! With FAC, units are (cm^2/molecule) 6 | FAC=1.0 7 | 235.0 2.150E-18 1.0000 8 | 240.0 1.760E-18 1.0000 9 | 245.0 1.370E-18 1.0000 10 | 250.0 1.060E-18 1.0000 11 | 255.0 6.500E-19 1.0000 12 | 260.0 6.460E-19 1.0000 13 | 265.0 6.930E-19 1.0000 14 | 270.0 9.030E-19 1.0000 15 | 275.0 1.100E-18 1.0000 16 | 280.0 1.320E-18 1.0000 17 | 285.0 1.440E-18 1.0000 18 | 290.0 1.440E-18 1.0000 19 | 295.0 1.420E-18 1.0000 20 | 300.0 1.290E-18 1.0000 21 | 305.0 1.140E-18 1.0000 22 | 310.0 1.050E-18 1.0000 23 | 315.0 9.810E-19 1.0000 24 | 320.0 8.030E-19 1.0000 25 | 325.0 7.540E-19 1.0000 26 | 330.0 5.870E-19 1.0000 27 | 335.0 5.770E-19 1.0000 28 | 340.0 4.370E-19 1.0000 29 | 345.0 3.570E-19 1.0000 30 | 350.0 2.690E-19 1.0000 31 | 355.0 2.290E-19 1.0000 32 | 360.0 1.610E-19 1.0000 33 | 365.0 1.130E-19 1.0000 34 | 370.0 9.000E-20 1.0000 35 | 375.0 6.900E-20 1.0000 36 | 380.0 4.100E-20 1.0000 37 | 385.0 3.300E-20 1.0000 38 | 390.0 2.200E-20 1.0000 39 | 395.0 1.500E-20 1.0000 40 | 400.0 6.000E-21 1.0000 41 | 405.0 0.000E+00 1.0000 42 | -------------------------------------------------------------------------------- /UTIL/create_ebi/src/NOTICE.EXT: -------------------------------------------------------------------------------- 1 | 2 | !......................................................................... 3 | ! Version "@(#)$Header$" 4 | ! EDSS/Models-3 I/O API. 5 | ! Copyright (C) 1992-2002 MCNC and Carlie J. Coats, Jr., and 6 | ! copyright (C) 2002-2004 Baron Advanced Meteorological Systems, LLC 7 | ! 8 | ! Distributed under the GNU LESSER GENERAL PUBLIC LICENSE version 2.1 9 | ! 10 | ! DO NOT EDIT !! 11 | ! 12 | ! The EDSS/Models-3 I/O API depends in an essential manner 13 | ! upon the I/O API source code. ANY CHANGES to INCLUDE files 14 | ! are likely to result in very obscure, difficult-to-diagnose 15 | ! bugs caused by an inconsistency between standard "libioapi.a" 16 | ! object-libraries and whatever code is compiled with the 17 | ! resulting modified INCLUDE-file. 18 | ! 19 | ! By making any changes to any of these INCLUDE files, the user 20 | ! explicitly agrees that in the case any assistance is required 21 | ! of MCNC or of the I/O API author, Carlie J. Coats, Jr., as 22 | ! a result of such changes, THE USER AND/OR HIS PROJECT OR 23 | ! CONTRACT AGREES TO REIMBURSE MCNC AND/OR THE I/O API AUTHOR, 24 | ! CARLIE J. COATS, JR., AT A RATE TRIPLE THE NORMAL CONTRACT 25 | ! RATE FOR THE SERVICES REQUIRED. 26 | ! 27 | ! See file "LGPL.txt" for additional conditions of use. 28 | !......................................................................... 29 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CLONO2-2: -------------------------------------------------------------------------------- 1 | CLONO2-2 2 | ! CLONO2 + hv = CL. + NO3 3 | ! CLONO2 absorption cross sections and quantum yields recommended by IUPAC (2005) 4 | ! 5 | Points (the mechanism evaluated with this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 280.0 1.190E-19 0.6000 9 | 285.0 8.800E-20 0.6000 10 | 290.0 6.410E-20 0.6000 11 | 295.0 4.380E-20 0.6000 12 | 300.0 3.130E-20 0.6000 13 | 305.0 2.240E-20 0.6000 14 | 310.0 1.600E-20 0.6140 15 | 315.0 1.140E-20 0.6500 16 | 320.0 8.310E-21 0.6860 17 | 325.0 6.130E-21 0.7210 18 | 330.0 4.660E-21 0.7570 19 | 335.0 3.670E-21 0.7930 20 | 340.0 3.020E-21 0.8290 21 | 345.0 2.580E-21 0.8640 22 | 350.0 2.290E-21 0.9000 23 | 355.0 2.080E-21 0.9360 24 | 360.0 2.000E-21 0.9710 25 | 365.0 1.800E-21 1.0000 26 | 370.0 1.590E-21 1.0000 27 | 375.0 1.410E-21 1.0000 28 | 380.0 1.210E-21 1.0000 29 | 385.0 1.370E-21 1.0000 30 | 390.0 9.100E-22 1.0000 31 | 395.0 7.600E-22 1.0000 32 | 400.0 6.400E-22 1.0000 33 | 405.0 5.400E-22 1.0000 34 | 410.0 4.400E-22 1.0000 35 | 415.0 3.600E-22 1.0000 36 | 420.0 3.200E-22 1.0000 37 | 425.0 2.300E-22 1.0000 38 | 430.0 1.900E-22 1.0000 39 | 435.0 0.000E+00 1.0000 40 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/COOH: -------------------------------------------------------------------------------- 1 | COOH 2 | ! CH3OOH + HV = PRODUCTS 3 | ! IUPAC (1997). Also recommend unit quantum yields. 4 | ! wl abs qy 5 | Points (the mechanism evaluated with this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 210.0 3.120E-19 1.0000 9 | 215.0 2.090E-19 1.0000 10 | 220.0 1.540E-19 1.0000 11 | 225.0 1.220E-19 1.0000 12 | 230.0 9.620E-20 1.0000 13 | 235.0 7.610E-20 1.0000 14 | 240.0 6.050E-20 1.0000 15 | 245.0 4.880E-20 1.0000 16 | 250.0 3.980E-20 1.0000 17 | 255.0 3.230E-20 1.0000 18 | 260.0 2.560E-20 1.0000 19 | 265.0 2.110E-20 1.0000 20 | 270.0 1.700E-20 1.0000 21 | 275.0 1.390E-20 1.0000 22 | 280.0 1.090E-20 1.0000 23 | 285.0 8.630E-21 1.0000 24 | 290.0 6.910E-21 1.0000 25 | 295.0 5.510E-21 1.0000 26 | 300.0 4.130E-21 1.0000 27 | 305.0 3.130E-21 1.0000 28 | 310.0 2.390E-21 1.0000 29 | 315.0 1.820E-21 1.0000 30 | 320.0 1.370E-21 1.0000 31 | 325.0 1.050E-21 1.0000 32 | 330.0 7.900E-22 1.0000 33 | 335.0 6.100E-22 1.0000 34 | 340.0 4.700E-22 1.0000 35 | 345.0 3.500E-22 1.0000 36 | 350.0 2.700E-22 1.0000 37 | 355.0 2.100E-22 1.0000 38 | 360.0 1.600E-22 1.0000 39 | 365.0 1.200E-22 1.0000 40 | 370.0 0.000E+00 1.0000 41 | -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Emissions-Updates.md: -------------------------------------------------------------------------------- 1 | # Emissions Updates 2 | 3 | This page contains links to Wiki pages describing current and past changes to the Emission related components in CMAQ. 4 | 5 | * [Detailed Emissions Scaling Isolation and Diagnostics Module (DESID)](./CMAQ-Release-Notes:-Emissions-Updates:-Detailed-Emissions-Scaling-Isolation-and-Diagnostics-Module-(DESID).md) 6 | * [BEIS Biogenic Emissions](./CMAQ-Release-Notes:-Emissions-Updates:-BEIS-Biogenic-Emissions.md) 7 | * [Model of Emissions of Gases and Aerosols from Nature (MEGAN) Biogenic Emissions](./CMAQ-Release-Notes:-Emissions-Updates:-Model-of-Emissions-of-Gases-and-Aerosols-from-Nature-(MEGAN)-Biogenic-Emissions.md) 8 | * [Environmental Policy Integrated Climate (EPIC) Model](./CMAQ-Release-Notes:-Emissions-Updates:-Environmental-Policy-Integrated-Climate-(EPIC)-Model.md) 9 | * [Wind-Blown Dust Emissions](./CMAQ-Release-Notes:-Emissions-Updates:-Wind-Blown-Dust-Emissions.md) 10 | * [Lightning Emissions](./CMAQ-Release-Notes:-Emissions-Updates:-Lightning-Emissions.md) 11 | * [Marine Gas Emissions](./CMAQ-Release-Notes:-Emissions-Updates:-Marine-Gas-Emissions.md) 12 | * [Sea-Spray Aerosol Emissions](./CMAQ-Release-Notes:-Emissions-Updates:-Sea-Spray-Aerosol-Emissions.md) 13 | * [Gridded Emissions](./CMAQ-Release-Notes:-Emissions-Updates:-Gridded-Emissions.md) 14 | * [Point Source Emissions](./CMAQ-Release-Notes:-Emissions-Updates:-Point-Source-Emissions.md) 15 | 16 | 17 | 18 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/IMONIT_RACM2: -------------------------------------------------------------------------------- 1 | IMONIT_RACM2 2 | ! IMONIT + hv = HKET + NO2: j(Pj_imonit) ; 3 | ! j(Pj_onitoh1) ~ MCM n-propyl nitrate (n-C3H7ONO2) : J<53>, 4 | ! divided by 3 at mech.def file: Browne et al. 2014: divided by 3 due to the hydroxy group (Robert & Fajer 1989) 5 | ! Absorption x-section taken from IUPAC recommended 6 | ! Quantum Yield (φ) = 1.00 IUPAC recommended 7 | ! Made by Azimeh Zare Jul2016 8 | !Absorption cross-sections at 298 K 9 | Points (the mechanism evaluated with this format) 10 | ! With FAC, units are (cm^2/molecule) 11 | FAC=1 12 | 185.0 1.810E-17 1.000 13 | 190.0 1.800E-17 1.000 14 | 195.0 1.600E-17 1.000 15 | 200.0 1.260E-17 1.000 16 | 205.0 0.855E-17 1.000 17 | 210.0 0.489E-17 1.000 18 | 215.0 0.244E-17 1.000 19 | 220.0 0.105E-17 1.000 20 | 225.0 0.050E-17 1.000 21 | 230.0 0.027E-17 1.000 22 | 235.0 0.015E-17 1.000 23 | 240.0 8.900E-20 1.000 24 | 245.0 6.000E-20 1.000 25 | 250.0 4.800E-20 1.000 26 | 255.0 4.400E-20 1.000 27 | 260.0 4.000E-20 1.000 28 | 265.0 3.600E-20 1.000 29 | 270.0 3.200E-20 1.000 30 | 275.0 2.800E-20 1.000 31 | 280.0 2.300E-20 1.000 32 | 285.0 1.800E-20 1.000 33 | 290.0 1.300E-20 1.000 34 | 295.0 0.950E-20 1.000 35 | 300.0 0.570E-20 1.000 36 | 305.0 0.340E-20 1.000 37 | 310.0 0.190E-20 1.000 38 | 315.0 0.100E-20 1.000 39 | 320.0 0.053E-20 1.000 40 | 325.0 0.031E-20 1.000 41 | 330.0 0.022E-20 1.000 42 | 335.0 0.018E-20 1.000 43 | 340.0 0.016E-20 1.000 44 | -------------------------------------------------------------------------------- /UTIL/bldmake/README.md: -------------------------------------------------------------------------------- 1 | The bldmake utility is used to create a Makefile suitable for compiling the components of CMAQ (e.g. CCTM, post-processing tools, ICON, BCON, etc.). The Makefiles produced will contain the proper rules, compilation flags, and library paths to produce each executable. 2 | 3 | The utility relies on a text-based configuration file (e.g. CCTM_v53.cfg) to determine the contents of the Makefile. Each configuration file includes information about the build-time options for the target executable, the compiler brand and version, the paths to required libraries (i.e. NetCDF and IOAPI), and compilation flags. With this input, bldmake harvests source code from the CMAQ repository consistent with the selected build-time options and auto-populates the Makefile with the correct dependencies for each process module. 4 | 5 | Note that each Makefile created by bldmake will only work for a specific compiler/version (set in the input to bldmake). Users should ensure that their compute environment is consistent when compiling with that Makefile and running the generated executable. 6 | 7 | The CMAQ repo contains shell script drivers (e.g. bldit_cctm.csh, bldit_combine.csh, etc.) for choosing build options, populating the bldmake configuration file, running bldmake to generate a Makefile, and running the Makefile to create an executable. The CMAQ team recommends users refrain from modifying bldmake or executing it stand-alone. Instead, please use these shell script drivers. 8 | 9 | 10 | -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Chemistry.md: -------------------------------------------------------------------------------- 1 | # Chemistry 2 | 3 | This page contains links to Wiki pages describing current and past changes to the Chemical components in CMAQ. 4 | 5 | ### Chemistry Changes 6 | * [Community Regional Atmospheric Chemistry Multiphase Mechanism (CRACMM)](./CMAQ-Release-Notes:-Chemistry:-Community-Regional-Atmospheric-Chemistry-Multiphase-Mechanism-(CRACMM).md) 7 | * [Carbon Bond 6 Mechanism (CB6)](./CMAQ-Release-Notes:-Chemistry:-Carbon-Bond-6-Mechanism-(CB6).md) 8 | * [Carbon Bond 6 Mechanism (CB6) with Detailed Marine Halogen Chemistry](./CMAQ-Release-Notes:-Chemistry:-Carbon-Bond-6-Mechanism-(CB6)-with-Detailed-Marine-Halogen-Chemistry.md) 9 | * [Carbon Bond 6 Mechanism (CB6) with Hazardous Air Pollutants](./CMAQ-Release-Notes:-Chemistry:-Carbon-Bond-6-Mechanism-(CB6)-with-Hazardous-Air-Pollutants.md) 10 | * [State Air Pollution Research Center (SAPRC)](./CMAQ-Release-Notes:-Chemistry:-State-Air-Pollution-Research-Center-(SAPRC).md) 11 | * [Regional Atmospheric Chemistry Mechanism (RACM)](./CMAQ-Release-Notes:-Chemistry:-Regional-Atmospheric-Chemistry-Mechanism-(RACM).md) 12 | * [Aerosol Dynamics](./CMAQ-Release-Notes:-Chemistry:-Aerosol-Dynamics.md) 13 | * [Aqueous Chemistry Scavenging and Wet Deposition](./CMAQ-Release-Notes:-Chemistry:-Aqueous-Chemistry-Scavenging-and-Wet-Deposition.md) 14 | * [Gas Phase Chemistry Solvers](./CMAQ-Release-Notes:-Chemistry:-Gas-Phase-Chem-Solvers.md) 15 | * [Photolysis](./CMAQ-Release-Notes:-Chemistry:-Photolysis.md) -------------------------------------------------------------------------------- /DOCS/Users_Guide/Tutorials/README.md: -------------------------------------------------------------------------------- 1 | CMAQ Tutorials 2 | ============== 3 | 4 | A series of short tutorials provide practical examples of how to set up and run CMAQ, exercise different features in the software, and better understand the software system. Community members are encouraged to both suggest ideas for new tutorials and to contribute tutorials directly to this repository. [Contact the CMAS Center](mailto:cmas@unc.edu) with new tutorial ideas. 5 | 6 | - **[Directions for building libraries and configuring your linux environment for CMAQ](CMAQ_UG_tutorial_configure_linux_environment.md)** 7 | 8 | - **[Directions for running CMAQ test cases](CMAQ_UG_tutorial_running_benchmarks.md)** 9 | 10 | - **Other Tutorials** 11 | - [Debugging Tips](CMAQ_UG_tutorial_debug.md) 12 | - [Using the Community Regional Atmospheric Chemistry Multiphase Mechanism (CRACMM)](CMAQ_UG_tutorial_CRACMM.md) 13 | - [Manipulate Emissions Inputs with the DESID Module](CMAQ_UG_tutorial_emissions.md) 14 | - [Creating an OCEAN file](CMAQ_UG_tutorial_oceanfile.md) 15 | - [Adding an Inert Tracer Species to CMAQ](CMAQ_UG_tutorial_tracers.md) 16 | - [Create Initial and Boundary Conditions from Seasonal Average Hemispheric CMAQ Output](CMAQ_UG_tutorial_HCMAQ_IC_BC.md) 17 | - [Modifying a CMAQ Chemical Mechanism](CMAQ_UG_tutorial_chemicalmechanism.md) 18 | 19 | 27 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/mechanism_information/cb6r3_ae7_aq/NR7_species_table.md: -------------------------------------------------------------------------------- 1 | **The NR namelist for cb6r3_ae7_aq has the following gas phase species.** 2 | 3 | | **Model Species** | **Name** | **Molecular Weight** | **Explicit or Lumped** | 4 | | ----------------- | ---------------------------------------------------- | -------------------- | ---------------------- | 5 | | LVPCSOG | surrogate SOA precursor gas for combustion/anthropogenic sources | 170.0 | L | 6 | | NH3 | ammonia | 17.0 | E | 7 | | SVMT1 | low volatility gas from monoterpene photoxidation | 300.0 | L | 8 | | SVMT2 | low volatility gas from monoterpene photoxidation | 200.0 | L | 9 | | SVMT3 | semivolatile gas from monoterpene photoxidation | 186.0 | L | 10 | | SVMT4 | semivolatile gas from monoterpene photoxidation | 184.0 | L | 11 | | SVMT5 | semivolatile gas from monoterpene photoxidation | 170.0 | L | 12 | | SVMT6 | semivolatile gas from monoterpene photoxidation | 168.0 | L | 13 | | SVISO1 | semivolatile gas of secondary aerosol material from isoprene | 132.0 | L | 14 | | SVISO2 | semivolatile gas of secondary aerosol material from isoprene | 133.0 | L | 15 | | SVSQT | semivolatile gas of secondary aerosol material from sesquiterpenes | 273.0 | L | 16 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/mechanism_information/cb6r5_ae7_aq/NR7_species_table.md: -------------------------------------------------------------------------------- 1 | **The NR namelist for cb6r5_ae7_aq has the following gas phase species.** 2 | 3 | | **Model Species** | **Name** | **Molecular Weight** | **Explicit or Lumped** | 4 | | ----------------- | ---------------------------------------------------- | -------------------- | ---------------------- | 5 | | LVPCSOG | surrogate SOA precursor gas for combustion/anthropogenic sources | 170.0 | L | 6 | | NH3 | ammonia | 17.0 | E | 7 | | SVMT1 | low volatility gas from monoterpene photoxidation | 300.0 | L | 8 | | SVMT2 | low volatility gas from monoterpene photoxidation | 200.0 | L | 9 | | SVMT3 | semivolatile gas from monoterpene photoxidation | 186.0 | L | 10 | | SVMT4 | semivolatile gas from monoterpene photoxidation | 184.0 | L | 11 | | SVMT5 | semivolatile gas from monoterpene photoxidation | 170.0 | L | 12 | | SVMT6 | semivolatile gas from monoterpene photoxidation | 168.0 | L | 13 | | SVISO1 | semivolatile gas of secondary aerosol material from isoprene | 132.0 | L | 14 | | SVISO2 | semivolatile gas of secondary aerosol material from isoprene | 133.0 | L | 15 | | SVSQT | semivolatile gas of secondary aerosol material from sesquiterpenes | 273.0 | L | 16 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/mechanism_information/cb6r5m_ae7_aq/NR7_species_table.md: -------------------------------------------------------------------------------- 1 | **The NR namelist for cb6r5m_ae7_aq has the following gas phase species.** 2 | 3 | | **Model Species** | **Name** | **Molecular Weight** | **Explicit or Lumped** | 4 | | ----------------- | ---------------------------------------------------- | -------------------- | ---------------------- | 5 | | LVPCSOG | surrogate SOA precursor gas for combustion/anthropogenic sources | 170.0 | L | 6 | | NH3 | ammonia | 17.0 | E | 7 | | SVMT1 | low volatility gas from monoterpene photoxidation | 300.0 | L | 8 | | SVMT2 | low volatility gas from monoterpene photoxidation | 200.0 | L | 9 | | SVMT3 | semivolatile gas from monoterpene photoxidation | 186.0 | L | 10 | | SVMT4 | semivolatile gas from monoterpene photoxidation | 184.0 | L | 11 | | SVMT5 | semivolatile gas from monoterpene photoxidation | 170.0 | L | 12 | | SVMT6 | semivolatile gas from monoterpene photoxidation | 168.0 | L | 13 | | SVISO1 | semivolatile gas of secondary aerosol material from isoprene | 132.0 | L | 14 | | SVISO2 | semivolatile gas of secondary aerosol material from isoprene | 133.0 | L | 15 | | SVSQT | semivolatile gas of secondary aerosol material from sesquiterpenes | 273.0 | L | 16 | -------------------------------------------------------------------------------- /CCTM/src/MECHS/mechanism_information/saprc07tic_ae7i_aq/NR7_species_table.md: -------------------------------------------------------------------------------- 1 | **The NR namelist for saprc07tic_ae7i_aq has the following gas phase species.** 2 | 3 | | **Model Species** | **Name** | **Molecular Weight** | **Explicit or Lumped** | 4 | | ----------------- | ---------------------------------------------------- | -------------------- | ---------------------- | 5 | | LVPCSOG | surrogate SOA precursor gas for combustion/anthropogenic sources | 170.0 | L | 6 | | NH3 | ammonia | 17.0 | E | 7 | | SVMT1 | low volatility gas from monoterpene photoxidation | 300.0 | L | 8 | | SVMT2 | low volatility gas from monoterpene photoxidation | 200.0 | L | 9 | | SVMT3 | semivolatile gas from monoterpene photoxidation | 186.0 | L | 10 | | SVMT4 | semivolatile gas from monoterpene photoxidation | 184.0 | L | 11 | | SVMT5 | semivolatile gas from monoterpene photoxidation | 170.0 | L | 12 | | SVMT6 | semivolatile gas from monoterpene photoxidation | 168.0 | L | 13 | | SVISO1 | semivolatile gas of secondary aerosol material from isoprene | 132.0 | L | 14 | | SVISO2 | semivolatile gas of secondary aerosol material from isoprene | 133.0 | L | 15 | | SVSQT | semivolatile gas of secondary aerosol material from sesquiterpenes | 273.0 | L | 16 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/TBUTNO3_MCMv32: -------------------------------------------------------------------------------- 1 | TBUTNO3_MCMv32 2 | !tert-butyl nitrate, 1,1-dimethyl-1-ethyl nitrate 3 | !t-c4h9no3 ---> t-c4h90 + no2 4 | !cross section from URL 5 | !http://joseba.mpch-mainz.mpg.de/spectral_atlas_data/ 6 | ! cross_sections/Organics%20(N-compounds)/Nitrates/ 7 | ! t-C4H9ONO2,(CH3)3CONO2_RobertsFajer(1989)_298K_270-330nm.txt 8 | ! (last accessed Nov.28,2017) 9 | ! Reference: 10 | ! J.M. Roberts and R.W. Fajer, "UV absorption cross sections of organic nitrates 11 | ! of potential atmospheric importance and estimation of atmospheric lifetimes," 12 | ! Environ. Sci. Technol. 23, 945-951 (1989); DOI: 10.1021/es00066a003 13 | ! 14 | !WVL XC,cm^2 QY 15 | Points 16 | ! With FAC, units are (cm^2/molecule) 17 | FAC=1.0 18 | 270.0 4.27E-20 1.0 19 | 272.0 4.20E-20 1.0 20 | 274.0 4.11E-20 1.0 21 | 276.0 3.98E-20 1.0 22 | 278.0 3.83E-20 1.0 23 | 280.0 3.66E-20 1.0 24 | 282.0 3.46E-20 1.0 25 | 284.0 3.25E-20 1.0 26 | 286.0 3.03E-20 1.0 27 | 288.0 2.80E-20 1.0 28 | 290.0 2.57E-20 1.0 29 | 292.0 2.34E-20 1.0 30 | 294.0 2.11E-20 1.0 31 | 296.0 1.89E-20 1.0 32 | 298.0 1.68E-20 1.0 33 | 300.0 1.48E-20 1.0 34 | 302.0 1.29E-20 1.0 35 | 304.0 1.12E-20 1.0 36 | 306.0 9.66E-21 1.0 37 | 308.0 8.25E-21 1.0 38 | 310.0 6.99E-21 1.0 39 | 312.0 5.87E-21 1.0 40 | 314.0 4.90E-21 1.0 41 | 316.0 4.05E-21 1.0 42 | 318.0 3.32E-21 1.0 43 | 320.0 2.70E-21 1.0 44 | 322.0 2.18E-21 1.0 45 | 324.0 1.75E-21 1.0 46 | 326.0 1.39E-21 1.0 47 | 328.0 1.10E-21 1.0 48 | 330.0 8.59E-22 1.0 49 | 332.0 6.66E-22 1.0 50 | 334.0 5.13E-22 1.0 51 | 52 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HNO4-06: -------------------------------------------------------------------------------- 1 | HNO4-06 2 | ! HO2NO2 + HV = PRODUCTS 3 | ! NASA (2006) 4 | ! 5 | Points (the mechanism evaluated with this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 280.0 9.290E-20 1.0000 9 | 282.0 8.110E-20 1.0000 10 | 284.0 6.930E-20 1.0000 11 | 286.0 5.860E-20 1.0000 12 | 288.0 4.910E-20 1.0000 13 | 290.0 3.950E-20 1.0000 14 | 292.0 3.370E-20 1.0000 15 | 294.0 2.780E-20 1.0000 16 | 296.0 2.300E-20 1.0000 17 | 298.0 1.910E-20 1.0000 18 | 300.0 1.520E-20 1.0000 19 | 302.0 1.280E-20 1.0000 20 | 304.0 1.050E-20 1.0000 21 | 306.0 8.530E-21 1.0000 22 | 308.0 7.020E-21 1.0000 23 | 310.0 5.510E-21 1.0000 24 | 312.0 4.650E-21 1.0000 25 | 314.0 3.800E-21 1.0000 26 | 316.0 3.130E-21 1.0000 27 | 318.0 2.650E-21 1.0000 28 | 320.0 2.160E-21 1.0000 29 | 322.0 1.840E-21 1.0000 30 | 324.0 1.520E-21 1.0000 31 | 326.0 1.280E-21 1.0000 32 | 328.0 1.100E-21 1.0000 33 | 330.0 9.260E-22 1.0000 34 | 332.0 7.880E-22 1.0000 35 | 334.0 6.500E-22 1.0000 36 | 336.0 5.400E-22 1.0000 37 | 338.0 4.560E-22 1.0000 38 | 340.0 3.720E-22 1.0000 39 | 342.0 3.200E-22 1.0000 40 | 344.0 2.680E-22 1.0000 41 | 346.0 2.280E-22 1.0000 42 | 348.0 1.980E-22 1.0000 43 | 350.0 1.680E-22 1.0000 44 | 352.0 1.380E-22 1.0000 45 | 360.0 0.000E+00 1.0000 46 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/IC3ONO2: -------------------------------------------------------------------------------- 1 | IC3ONO2 2 | ! ! I-C3H7ONO2 + HV = PRODUCTS 3 | ! IUPAC (1997). Recommend assuming unit quantum yields. 4 | ! This has stronger absorption than n-C3-ONO2 and lower nitrates, 5 | ! but chosen as representative of lumped higher nitrates. 6 | ! wl abs 7 | Points (the mechanism evaluated with this format) 8 | ! With FAC, units are (cm^2/molecule) 9 | FAC=1.0 10 | 185.0 1.790E-17 1.0000 11 | 188.0 1.810E-17 1.0000 12 | 190.0 1.790E-17 1.0000 13 | 195.0 1.610E-17 1.0000 14 | 200.0 1.260E-17 1.0000 15 | 205.0 8.670E-18 1.0000 16 | 210.0 4.980E-18 1.0000 17 | 215.0 2.470E-18 1.0000 18 | 220.0 1.170E-18 1.0000 19 | 225.0 5.800E-19 1.0000 20 | 230.0 3.100E-19 1.0000 21 | 235.0 1.800E-19 1.0000 22 | 240.0 1.100E-19 1.0000 23 | 245.0 7.000E-20 1.0000 24 | 250.0 5.700E-20 1.0000 25 | 255.0 5.200E-20 1.0000 26 | 260.0 4.900E-20 1.0000 27 | 265.0 4.600E-20 1.0000 28 | 270.0 4.100E-20 1.0000 29 | 275.0 3.600E-20 1.0000 30 | 280.0 2.900E-20 1.0000 31 | 285.0 2.300E-20 1.0000 32 | 290.0 1.700E-20 1.0000 33 | 295.0 1.200E-20 1.0000 34 | 300.0 8.100E-21 1.0000 35 | 305.0 5.200E-21 1.0000 36 | 310.0 3.200E-21 1.0000 37 | 315.0 1.900E-21 1.0000 38 | 320.0 1.100E-21 1.0000 39 | 325.0 6.100E-22 1.0000 40 | 330.0 3.700E-22 1.0000 41 | 335.0 0.000E+00 1.0000 42 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/ALD_CBIV88: -------------------------------------------------------------------------------- 1 | ALD_CBIV88 2 | ! Acetaldehyde Photolysis (ALD) 3 | ! CH3CHO + hv (+2O2)-> CH3OO + HO2 + CO 4 | ! Taken from Gery et al. (1988); Absorption CS and QY from Baulch et al. (1984). 5 | ! format: wl, abs_cs, qy 6 | Centered 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0E-20 9 | 256 1.76 0.300 10 | 258 1.99 0.305 11 | 262 2.44 0.326 12 | 266 3.05 0.358 13 | 270 3.42 0.390 14 | 274 4.03 0.466 15 | 278 4.19 0.542 16 | 280 4.50 0.580 17 | 281 4.54 0.575 18 | 282 4.58 0.570 19 | 283 4.62 0.565 20 | 284 4.66 0.560 21 | 285 4.70 0.555 22 | 286 4.74 0.550 23 | 287 4.78 0.545 24 | 288 4.82 0.540 25 | 289 4.86 0.535 26 | 290 4.90 0.530 27 | 291 4.82 0.520 28 | 292 4.74 0.510 29 | 293 4.66 0.500 30 | 294 4.58 0.490 31 | 295 4.50 0.480 32 | 296 4.46 0.470 33 | 297 4.42 0.460 34 | 298 4.38 0.450 35 | 299 4.34 0.440 36 | 300 4.30 0.430 37 | 301 4.12 0.418 38 | 302 3.94 0.406 39 | 303 3.76 0.394 40 | 304 3.58 0.382 41 | 305 3.40 0.370 42 | 306 3.27 0.350 43 | 307 3.14 0.330 44 | 308 3.01 0.310 45 | 309 2.88 0.290 46 | 310 2.75 0.270 47 | 311 2.62 0.250 48 | 312 2.49 0.230 49 | 313 2.36 0.210 50 | 314 2.23 0.190 51 | 315 2.10 0.170 52 | 316 2.04 0.156 53 | 317 1.98 0.142 54 | 318 1.92 0.128 55 | 319 1.86 0.114 56 | 320 1.80 0.100 57 | 321 1.66 0.088 58 | 322 1.52 0.076 59 | 323 1.38 0.064 60 | 324 1.24 0.052 61 | 325 1.10 0.040 62 | 326 1.18 0.032 63 | 327 0.94 0.024 64 | 328 0.85 0.016 65 | 329 0.77 0.008 66 | 330 0.69 0.000 67 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/C2CHO_SAPRC99: -------------------------------------------------------------------------------- 1 | C2CHO 2 | ! C2CHO + HV = C2H5. + CHO. 3 | ! SAPRC-99 Photolysis data. Supplied by William P. L. Carter. 4 | ! Created from PhotDat.xls on 29-Jan-2000 10:07 5 | Points (the mechanism was evaluated assuming this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 294.0 5.800E-20 0.890 9 | 295.0 5.570E-20 0.885 10 | 296.0 5.370E-20 0.880 11 | 297.0 5.160E-20 0.875 12 | 298.0 5.020E-20 0.870 13 | 299.0 5.020E-20 0.865 14 | 300.0 5.040E-20 0.860 15 | 301.0 5.090E-20 0.855 16 | 302.0 5.070E-20 0.850 17 | 303.0 4.940E-20 0.818 18 | 304.0 4.690E-20 0.786 19 | 305.0 4.320E-20 0.755 20 | 306.0 4.040E-20 0.723 21 | 307.0 3.810E-20 0.691 22 | 308.0 3.650E-20 0.659 23 | 309.0 3.620E-20 0.627 24 | 310.0 3.600E-20 0.596 25 | 311.0 3.530E-20 0.564 26 | 312.0 3.500E-20 0.532 27 | 313.0 3.320E-20 0.500 28 | 314.0 3.060E-20 0.480 29 | 315.0 2.770E-20 0.460 30 | 316.0 2.430E-20 0.440 31 | 317.0 2.180E-20 0.420 32 | 318.0 2.000E-20 0.400 33 | 319.0 1.860E-20 0.380 34 | 320.0 1.830E-20 0.360 35 | 321.0 1.780E-20 0.340 36 | 322.0 1.660E-20 0.320 37 | 323.0 1.580E-20 0.300 38 | 324.0 1.490E-20 0.280 39 | 325.0 1.300E-20 0.260 40 | 326.0 1.130E-20 0.248 41 | 327.0 9.960E-21 0.236 42 | 328.0 8.280E-21 0.223 43 | 329.0 6.850E-21 0.211 44 | 330.0 5.750E-21 0.199 45 | 331.0 4.940E-21 0.187 46 | 332.0 4.660E-21 0.174 47 | 333.0 4.300E-21 0.162 48 | 334.0 3.730E-21 0.150 49 | 335.0 3.250E-21 0.133 50 | 336.0 2.800E-21 0.117 51 | 337.0 2.300E-21 0.100 52 | 338.0 1.850E-21 0.083 53 | 339.0 1.660E-21 0.067 54 | 340.0 1.550E-21 0.050 55 | 341.0 1.190E-21 0.033 56 | 342.0 7.600E-22 0.017 57 | 343.0 4.500E-22 0.000 58 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOrad_NASA94: -------------------------------------------------------------------------------- 1 | HCHOrad_NASA94 2 | ! Formaldehyde Photolysis to radical (HCHOrad) 3 | ! HCHO + hv -> H + HCO 4 | ! Taken from the original RADM data, with NASA (1994) updates 5 | ! format: wl, abs_cs, qy 6 | Centered 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 245.400 0.000E+00 0.000E+00 10 | 248.500 0.000E+00 5.671E-03 11 | 251.600 3.910E-22 3.405E-01 12 | 254.800 1.183E-21 3.228E-01 13 | 258.100 2.807E-21 3.169E-01 14 | 261.400 5.063E-21 3.194E-01 15 | 264.900 5.548E-21 3.325E-01 16 | 268.500 9.348E-21 3.647E-01 17 | 272.100 1.160E-20 4.055E-01 18 | 275.900 1.602E-20 4.556E-01 19 | 279.700 1.584E-20 5.223E-01 20 | 283.700 2.267E-20 6.061E-01 21 | 287.800 2.126E-20 6.805E-01 22 | 292.000 2.264E-20 7.243E-01 23 | 296.300 2.988E-20 7.423E-01 24 | 300.500 8.500E-21 7.502E-01 25 | 303.000 4.330E-20 7.530E-01 26 | 304.000 4.330E-20 7.530E-01 27 | 305.000 3.790E-20 7.530E-01 28 | 306.000 3.250E-20 7.530E-01 29 | 307.000 3.250E-20 7.530E-01 30 | 308.000 2.220E-20 7.480E-01 31 | 309.000 2.220E-20 7.480E-01 32 | 310.000 1.575E-20 7.435E-01 33 | 311.000 9.310E-21 7.390E-01 34 | 312.000 9.310E-21 7.390E-01 35 | 313.000 3.400E-20 7.240E-01 36 | 314.000 3.400E-20 7.240E-01 37 | 316.000 3.808E-20 6.907E-01 38 | 320.000 1.415E-20 5.910E-01 39 | 325.000 2.456E-20 4.560E-01 40 | 330.000 1.785E-20 3.010E-01 41 | 335.000 1.270E-21 1.305E-01 42 | 340.000 2.148E-20 1.800E-02 43 | 345.000 6.655E-21 5.000E-04 44 | 350.000 1.375E-21 0.000E+00 45 | 355.000 8.375E-21 0.000E+00 46 | 360.000 0.000E+00 0.000E+00 47 | -------------------------------------------------------------------------------- /UTIL/chemmech/src/MECHANISM_PARMS.f: -------------------------------------------------------------------------------- 1 | MODULE MECHANISM_PARMS 2 | 3 | IMPLICIT NONE 4 | 5 | INTEGER, PARAMETER :: MAXRXNUM = 2000 6 | 7 | INTEGER, PARAMETER :: MAXSPEC = 700 8 | 9 | INTEGER, PARAMETER :: MAXPRODS = 40 ! mechanism products dimension 10 | 11 | INTEGER, PARAMETER :: MAXRCTNTS = 3 ! mechanism reactants dimension 12 | 13 | INTEGER, PARAMETER :: MAXPHOTRXNS = 600 14 | 15 | INTEGER, PARAMETER :: MAXSPECRXNS = 600 16 | 17 | INTEGER, PARAMETER :: MAXFUNCTIONS = 6 * MAXRXNUM 18 | 19 | INTEGER, PARAMETER :: MAXSPECTERMS = MAXSPEC 20 | 21 | INTEGER, PARAMETER :: MAXFALLOFF = 150 22 | 23 | INTEGER, PARAMETER :: MAX3BODIES = 150 24 | 25 | INTEGER, PARAMETER :: MAXWRDLEN = 16 26 | 27 | INTEGER, PARAMETER :: MAXCONSTS = 5 ! mechanism "constants" 28 | 29 | INTEGER, PARAMETER :: MAXNLIST = 50 ! Max no. of species in SS or Eliminate lists 30 | 31 | INTEGER, PARAMETER :: KPPEQN_UNIT = 95 32 | 33 | 34 | 35 | LOGICAL :: END_OF_IMECH = .FALSE. ! end of mech_def encountered 36 | LOGICAL :: REORDER_SPECIES = .FALSE. ! .TRUE. ! reorder species based on #terms in time derivative 37 | LOGICAL :: ASSESS_EFFECTS = .FALSE. ! remove terms in time derivative if reaction loss and production cancel out 38 | LOGICAL :: REORDER_REACTIONS = .FALSE. ! .TRUE. 39 | LOGICAL :: OMIT_RCONST_DATA = .FALSE. ! Do not write rate constant parameters of reaction data module 40 | 41 | END MODULE MECHANISM_PARMS 42 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/O2_JPL06-2: -------------------------------------------------------------------------------- 1 | O2_JPL06-2 2 | ! Molecular Oxygen photolysis (O2) 3 | ! O2 + hv -> O + O 4 | ! 5 | ! Reference: 6 | ! Sander, S.P., R.R. Friedl, D.M. Golden, M.J. Kurylo, G.K. Moortgat, 7 | ! H. Keller-Rudek, P.H. Wine, A.R. Ravishankara, C.E. Kolb, M.J. Molina, 8 | ! B.J. Finlayson-Pitts, R.E. Huie, V.L. Orkin "Chemical Kinetics and 9 | ! Photochemical Data for Use in Atmospheric Studies, Evaluation Number 15," 10 | ! JPL Publication 06-2, Jet Propulsion Laboratory, California Institute of 11 | ! Technology Pasadena, CA, 2006 12 | ! 13 | ! Absorption cross sections from Table 4-2 14 | ! Quantum yields set to 1.0 (not used in the photolysis rate program) 15 | ! format: wavelength (nm), abs_cs, qy 16 | Centered 17 | ! With FAC, units are (cm^2/molecule) 18 | FAC=1.0E-24 19 | 205 7.35 1.0 20 | 206 7.13 1.0 21 | 207 7.05 1.0 22 | 208 6.86 1.0 23 | 209 6.68 1.0 24 | 210 6.51 1.0 25 | 211 6.24 1.0 26 | 212 6.05 1.0 27 | 213 5.89 1.0 28 | 214 5.72 1.0 29 | 215 5.59 1.0 30 | 216 5.35 1.0 31 | 217 5.13 1.0 32 | 218 4.88 1.0 33 | 219 4.64 1.0 34 | 220 4.46 1.0 35 | 221 4.26 1.0 36 | 222 4.09 1.0 37 | 223 3.89 1.0 38 | 224 3.67 1.0 39 | 225 3.45 1.0 40 | 226 3.21 1.0 41 | 227 2.98 1.0 42 | 228 2.77 1.0 43 | 229 2.63 1.0 44 | 230 2.43 1.0 45 | 231 2.25 1.0 46 | 232 2.10 1.0 47 | 233 1.94 1.0 48 | 234 1.78 1.0 49 | 235 1.63 1.0 50 | 236 1.48 1.0 51 | 237 1.34 1.0 52 | 238 1.22 1.0 53 | 239 1.10 1.0 54 | 240 1.01 1.0 55 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CL2_IUPAC04: -------------------------------------------------------------------------------- 1 | CL2_IUPAC04 2 | ! CL2 + HV = 2*CL 3 | ! 260 nm and 470 nm 4 | ! IUPAC Subcommittee on Gas Kinetic Data Evaluation; Data Sheet PCl11 Website: 15th December 2000 5 | ! Website: http://www.iupac-kinetic.ch.cam.ac.uk between 260 nm and 470 nm 6 | ! > 260 nm 7 | ! J. Tellinghuisen, "Precise equilibrium constants from spectrophotometric data: 8 | ! BrCl in Br2/Cl2," J. Phys. Chem. A 107, 753-757 (2003) 9 | ! > 470 nm 10 | ! NASA JPL (2015) recommendation 11 | ! Assume these are point values (not specified in data source) 12 | POINT 13 | ! With FAC, units are (cm^2/molecule) 14 | FAC=1.0 15 | 200 6.50e-22 1 16 | 210 1.91e-22 1 17 | 220 1.53e-22 1 18 | 230 2.30e-22 1 19 | 240 1.53e-22 1 20 | 250 4.59e-22 1 21 | 260 2.0E-21 1 22 | 270 8.2E-21 1 23 | 280 2.6E-20 1 24 | 290 6.2E-20 1 25 | 300 1.19E-19 1 26 | 310 1.85E-19 1 27 | 320 2.37E-19 1 28 | 330 2.55E-19 1 29 | 340 2.35E-19 1 30 | 350 1.88E-19 1 31 | 360 1.32E-19 1 32 | 370 8.4E-20 1 33 | 380 5.0E-20 1 34 | 390 2.9E-20 1 35 | 400 1.8E-20 1 36 | 410 1.3E-20 1 37 | 420 9.6E-21 1 38 | 430 7.3E-21 1 39 | 440 5.4E-21 1 40 | 450 3.8E-21 1 41 | 460 2.6E-21 1 42 | 470 1.6E-21 1 43 | 480 9.57E-22 1 44 | 490 5.34E-22 1 45 | 500 2.83E-22 1 46 | 510 1.42E-22 1 47 | 520 6.81E-23 1 48 | 530 3.13E-23 1 49 | 540 1.37E-23 1 50 | 550 5.80E-23 1 51 | 52 | 53 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/CL2_IUPAC04_mod: -------------------------------------------------------------------------------- 1 | CL2_IUPAC04 2 | ! CL2 + HV = 2*CL 3 | ! 260 nm and 470 nm 4 | ! IUPAC Subcommittee on Gas Kinetic Data Evaluation; Data Sheet PCl11 Website: 15th December 2000 5 | ! Website: http://www.iupac-kinetic.ch.cam.ac.uk between 260 nm and 470 nm 6 | ! > 260 nm 7 | ! J. Tellinghuisen, "Precise equilibrium constants from spectrophotometric data: 8 | ! BrCl in Br2/Cl2," J. Phys. Chem. A 107, 753-757 (2003) 9 | ! > 470 nm 10 | ! NASA JPL (2015) recommendation 11 | ! Assume these are point values (not specified in data source) 12 | POINT 13 | ! With FAC, units are (cm^2/molecule) 14 | FAC=1.0 15 | 200 6.50e-22 1 16 | 210 1.91e-22 1 17 | 220 1.53e-22 1 18 | 230 2.30e-22 1 19 | 240 1.53e-22 1 20 | 250 4.59e-22 1 21 | 260 2.0E-21 1 22 | 270 8.2E-21 1 23 | 280 2.6E-20 1 24 | 290 6.2E-20 1 25 | 300 1.19E-19 1 26 | 310 1.85E-19 1 27 | 320 2.37E-19 1 28 | 330 2.55E-19 1 29 | 340 2.35E-19 1 30 | 350 1.88E-19 1 31 | 360 1.32E-19 1 32 | 370 8.4E-20 1 33 | 380 5.0E-20 1 34 | 390 2.9E-20 1 35 | 400 1.8E-20 1 36 | 410 1.3E-20 1 37 | 420 9.6E-21 1 38 | 430 7.3E-21 1 39 | 440 5.4E-21 1 40 | 450 3.8E-21 1 41 | 460 2.6E-21 1 42 | 470 1.6E-21 1 43 | 480 9.57E-22 1 44 | 490 5.34E-22 1 45 | 500 2.83E-22 1 46 | 510 1.42E-22 1 47 | 520 6.81E-23 1 48 | 530 3.13E-23 1 49 | 540 1.37E-23 1 50 | 550 5.80E-23 1 51 | 52 | 53 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BRNO2: -------------------------------------------------------------------------------- 1 | BRNO2 2 | ! BRNO2 + HV = BR + NO2 3 | ! BRNO2 Photolysis data 4 | ! Supplied by Brett Gantt 5 | ! Created from IUPAC dataset 3-Mar-2014 10:00 6 | Points (These data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 185.0 2.048E-17 1.000 10 | 190.0 3.601E-17 1.000 11 | 195.0 5.013E-17 1.000 12 | 200.0 5.386E-17 1.000 13 | 205.0 4.499E-17 1.000 14 | 210.0 2.521E-17 1.000 15 | 215.0 1.170E-17 1.000 16 | 220.0 5.540E-18 1.000 17 | 225.0 3.730E-18 1.000 18 | 230.0 3.430E-18 1.000 19 | 235.0 3.620E-18 1.000 20 | 240.0 3.870E-18 1.000 21 | 245.0 3.900E-18 1.000 22 | 250.0 3.630E-18 1.000 23 | 255.0 3.100E-18 1.000 24 | 260.0 2.510E-18 1.000 25 | 265.0 1.970E-18 1.000 26 | 270.0 1.540E-18 1.000 27 | 275.0 1.160E-18 1.000 28 | 280.0 8.800E-19 1.000 29 | 285.0 6.300E-19 1.000 30 | 290.0 4.400E-19 1.000 31 | 295.0 3.000E-19 1.000 32 | 300.0 2.000E-19 1.000 33 | 305.0 1.500E-19 1.000 34 | 310.0 1.100E-19 1.000 35 | 315.0 1.100E-19 1.000 36 | 320.0 1.000E-19 1.000 37 | 325.0 1.200E-19 1.000 38 | 330.0 1.300E-19 1.000 39 | 335.0 1.400E-19 1.000 40 | 340.0 1.600E-19 1.000 41 | 345.0 1.500E-19 1.000 42 | 350.0 1.600E-19 1.000 43 | 355.0 1.600E-19 1.000 44 | 360.0 1.800E-19 1.000 45 | 365.0 1.900E-19 1.000 46 | 370.0 1.700E-19 1.000 47 | 375.0 1.800E-19 1.000 48 | 380.0 1.700E-19 1.000 49 | 385.0 1.700E-19 1.000 50 | 390.0 1.600E-19 1.000 51 | 395.0 1.500E-19 1.000 52 | 400.0 1.400E-19 1.000 53 | 405.0 1.400E-19 1.000 54 | 410.0 1.300E-19 1.000 55 | 415.0 1.200E-19 1.000 56 | 420.0 1.100E-19 1.000 57 | 425.0 1.000E-19 1.000 58 | 430.0 9.000E-20 1.000 59 | 435.0 8.000E-20 1.000 60 | 440.0 7.000E-20 1.000 61 | 445.0 7.000E-20 1.000 62 | 450.0 6.000E-20 1.000 63 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOrad_RADM88: -------------------------------------------------------------------------------- 1 | HCHOrad_RADM88 2 | ! Formaldehyde Photolysis to radical (HCHOrad) 3 | ! HCHO + hv -> H + HCO 4 | ! Abs CS: Avg of Moortgat et al. [1980,1983] and Bass et al. [1980] 5 | ! QY from Moortgat et al. [1983]; Horowitz and Calvert [1978] 6 | ! format: wl, abs_cs, qy 7 | Beginning 8 | ! With FAC, units are (cm^2/molecule) 9 | FAC=1.0 10 | 246.914 0.000E+00 5.671E-03 11 | 250.000 3.910E-22 3.405E-01 12 | 253.165 1.183E-21 3.228E-01 13 | 256.410 2.807E-21 3.169E-01 14 | 259.740 5.063E-21 3.194E-01 15 | 263.158 5.548E-21 3.325E-01 16 | 266.667 9.348E-21 3.647E-01 17 | 270.270 1.160E-20 4.055E-01 18 | 273.973 1.602E-20 4.556E-01 19 | 277.778 1.584E-20 5.223E-01 20 | 281.690 2.267E-20 6.061E-01 21 | 285.714 2.126E-20 6.805E-01 22 | 289.855 2.264E-20 7.243E-01 23 | 294.118 2.988E-20 7.423E-01 24 | 298.500 1.523E-20 7.502E-01 25 | 302.500 2.281E-20 7.530E-01 26 | 303.500 6.326E-20 7.540E-01 27 | 304.500 4.668E-20 7.548E-01 28 | 305.500 4.497E-20 7.540E-01 29 | 306.500 2.035E-20 7.530E-01 30 | 307.500 1.412E-20 7.520E-01 31 | 308.500 2.959E-20 7.510E-01 32 | 309.500 1.745E-20 7.495E-01 33 | 310.500 7.280E-21 7.450E-01 34 | 311.500 1.340E-20 7.396E-01 35 | 312.500 1.247E-20 7.317E-01 36 | 313.500 3.917E-20 7.233E-01 37 | 314.500 3.947E-20 6.903E-01 38 | 317.500 1.526E-20 5.931E-01 39 | 322.500 2.110E-20 4.581E-01 40 | 327.500 1.923E-20 3.050E-01 41 | 332.500 2.134E-21 1.223E-01 42 | 337.500 1.632E-20 3.429E-03 43 | 342.500 6.668E-21 0.000E+00 44 | 347.500 1.519E-21 0.000E+00 45 | 352.500 7.166E-21 0.000E+00 46 | 357.500 9.075E-23 0.000E+00 47 | 362.500 0.000E+00 0.000E+00 48 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BRNO2_IUPAC10: -------------------------------------------------------------------------------- 1 | BRNO2_IUPAC10 2 | ! BRNO2 + HV = BR + NO2 3 | ! BRNO2 Photolysis data 4 | ! Supplied by Brett Gantt 5 | ! Created from IUPAC dataset PBr6 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 185.0 2.048E-17 1.000 10 | 190.0 3.601E-17 1.000 11 | 195.0 5.013E-17 1.000 12 | 200.0 5.386E-17 1.000 13 | 205.0 4.499E-17 1.000 14 | 210.0 2.521E-17 1.000 15 | 215.0 1.170E-17 1.000 16 | 220.0 5.540E-18 1.000 17 | 225.0 3.730E-18 1.000 18 | 230.0 3.430E-18 1.000 19 | 235.0 3.620E-18 1.000 20 | 240.0 3.870E-18 1.000 21 | 245.0 3.900E-18 1.000 22 | 250.0 3.630E-18 1.000 23 | 255.0 3.100E-18 1.000 24 | 260.0 2.510E-18 1.000 25 | 265.0 1.970E-18 1.000 26 | 270.0 1.540E-18 1.000 27 | 275.0 1.160E-18 1.000 28 | 280.0 8.800E-19 1.000 29 | 285.0 6.300E-19 1.000 30 | 290.0 4.400E-19 1.000 31 | 295.0 3.000E-19 1.000 32 | 300.0 2.000E-19 1.000 33 | 305.0 1.500E-19 1.000 34 | 310.0 1.100E-19 1.000 35 | 315.0 1.100E-19 1.000 36 | 320.0 1.000E-19 1.000 37 | 325.0 1.200E-19 1.000 38 | 330.0 1.300E-19 1.000 39 | 335.0 1.400E-19 1.000 40 | 340.0 1.600E-19 1.000 41 | 345.0 1.500E-19 1.000 42 | 350.0 1.600E-19 1.000 43 | 355.0 1.600E-19 1.000 44 | 360.0 1.800E-19 1.000 45 | 365.0 1.900E-19 1.000 46 | 370.0 1.700E-19 1.000 47 | 375.0 1.800E-19 1.000 48 | 380.0 1.700E-19 1.000 49 | 385.0 1.700E-19 1.000 50 | 390.0 1.600E-19 1.000 51 | 395.0 1.500E-19 1.000 52 | 400.0 1.400E-19 1.000 53 | 405.0 1.400E-19 1.000 54 | 410.0 1.300E-19 1.000 55 | 415.0 1.200E-19 1.000 56 | 420.0 1.100E-19 1.000 57 | 425.0 1.000E-19 1.000 58 | 430.0 9.000E-20 1.000 59 | 435.0 8.000E-20 1.000 60 | 440.0 7.000E-20 1.000 61 | 445.0 7.000E-20 1.000 62 | 450.0 6.000E-20 1.000 63 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOmol_NASA94: -------------------------------------------------------------------------------- 1 | HCHOmol_NASA94 2 | ! Formaldehyde Photolysis to molecular hydrogen (HCHOmol) 3 | ! HCHO + hv -> H2 + CO 4 | ! Taken from the original RADM data, with NASA (1994) updates 5 | ! format: wl, abs_cs, qy 6 | Centered 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 245.400 0.000E+00 0.000E+00 10 | 248.500 0.000E+00 7.697E-03 11 | 251.600 3.910E-22 4.797E-01 12 | 254.800 1.183E-21 4.889E-01 13 | 258.100 2.807E-21 4.943E-01 14 | 261.400 5.063E-21 4.980E-01 15 | 264.900 5.548E-21 4.945E-01 16 | 268.500 9.348E-21 4.845E-01 17 | 272.100 1.160E-20 4.566E-01 18 | 275.900 1.602E-20 3.861E-01 19 | 279.700 1.584E-20 3.418E-01 20 | 283.700 2.267E-20 3.251E-01 21 | 287.800 2.126E-20 3.061E-01 22 | 292.000 2.264E-20 2.871E-01 23 | 296.300 2.988E-20 2.698E-01 24 | 300.500 8.500E-21 2.546E-01 25 | 303.000 4.330E-20 2.470E-01 26 | 304.000 4.330E-20 2.470E-01 27 | 305.000 3.790E-20 2.470E-01 28 | 306.000 3.250E-20 2.470E-01 29 | 307.000 3.250E-20 2.470E-01 30 | 308.000 2.220E-20 2.520E-01 31 | 309.000 2.220E-20 2.520E-01 32 | 310.000 1.575E-20 2.565E-01 33 | 311.000 9.310E-21 2.610E-01 34 | 312.000 9.310E-21 2.610E-01 35 | 313.000 3.400E-20 2.760E-01 36 | 314.000 3.400E-20 2.760E-01 37 | 316.000 3.808E-20 3.093E-01 38 | 320.000 1.415E-20 3.955E-01 39 | 325.000 2.456E-20 5.150E-01 40 | 330.000 1.785E-20 6.655E-01 41 | 335.000 1.270E-21 7.335E-01 42 | 340.000 2.148E-20 6.345E-01 43 | 345.000 6.655E-21 5.020E-01 44 | 350.000 1.375E-21 3.710E-01 45 | 355.000 8.375E-21 2.310E-01 46 | 360.000 0.000E+00 1.036E-01 47 | 365.000 0.000E+00 5.906E-03 48 | 370.000 0.000E+00 0.000E+00 49 | -------------------------------------------------------------------------------- /DOCS/Release_Notes/CMAQ-Release-Notes:-Dry-Deposition-Air-Surface-Exchange:-Generalized-Changes.md: -------------------------------------------------------------------------------- 1 | ## Activate Dry Deposition Diagnostic Output for PMOTHR 2 | [Ben Murphy](mailto:murphy.ben@epa.gov), U.S. Environmental Protection Agency 3 | **Type of update**: Science Update 4 | **Release Version/Date**: CMAQv5.4 5 | **Description**: 6 | The diagnostic output for dry deposition of PMOTHR species was activated in the AE namelist by default. 7 | 8 | **Significance and Impact**: None. 9 | 10 | |Merge Commit | Internal record| 11 | |:------:|:-------:| 12 | |[Merge for PR#808](https://github.com/USEPA/CMAQ/commit/20ffc395a7d2e6c4686621dc43ea6d65f00b3679) | [PR#808](https://github.com/USEPA/CMAQ_Dev/pull/808) | 13 | 14 | ## Remove Remnants of Reading Dry Deposition Velocities from MCIP 15 | [Chris Nolte](mailto:nolte.chris@epa.gov), U.S. Environmental Protection Agency 16 | 17 | **Type of Update**: Bug Fix 18 | **Release Version/Date**: CMAQv5.4 19 | 20 | **Description**: 21 | Dry deposition velocities used to be computed in MCIP, then read by CMAQ. The capability to compute deposition velocities online (or "inline") was added in CMAQv4.7 in December 2008. The computation of deposition velocities was later removed from MCIP. However, the CMAQ code still had `ILDEPV` as a commented-out flag in `DEPV_DEFN`, as well as the `RDDEPV` routine, which was never called. These remnants have all been removed. 22 | 23 | **Significance and Impact**: Removes non-working option that had the potential for confusing users. 24 | 25 | |Merge Commit | Internal record| 26 | |:------:|:-------:| 27 | |[Merge for PR#679](https://github.com/USEPA/CMAQ/commit/e3021a6aadc355f3fad85d9bf325bbd6d871c2e8) | [PR#679](https://github.com/USEPA/CMAQ_Dev/pull/679) | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/BRNO2_IUPAC2014: -------------------------------------------------------------------------------- 1 | BRNO2 2 | ! BRNO2 + HV = BR + NO2 3 | ! BRNO2 Photolysis data 4 | ! Supplied by Brett Gantt 5 | ! Created from IUPAC dataset 3-Mar-2014 10:00 6 | Points (These data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 185.0 2.048E-17 1.000 10 | 190.0 3.601E-17 1.000 11 | 195.0 5.013E-17 1.000 12 | 200.0 5.386E-17 1.000 13 | 205.0 4.499E-17 1.000 14 | 210.0 2.521E-17 1.000 15 | 215.0 1.170E-17 1.000 16 | 220.0 5.540E-18 1.000 17 | 225.0 3.730E-18 1.000 18 | 230.0 3.430E-18 1.000 19 | 235.0 3.620E-18 1.000 20 | 240.0 3.870E-18 1.000 21 | 245.0 3.900E-18 1.000 22 | 250.0 3.630E-18 1.000 23 | 255.0 3.100E-18 1.000 24 | 260.0 2.510E-18 1.000 25 | 265.0 1.970E-18 1.000 26 | 270.0 1.540E-18 1.000 27 | 275.0 1.160E-18 1.000 28 | 280.0 8.800E-19 1.000 29 | 285.0 6.300E-19 1.000 30 | 290.0 4.400E-19 1.000 31 | 295.0 3.000E-19 1.000 32 | 300.0 2.000E-19 1.000 33 | 305.0 1.500E-19 1.000 34 | 310.0 1.100E-19 1.000 35 | 315.0 1.100E-19 1.000 36 | 320.0 1.000E-19 1.000 37 | 325.0 1.200E-19 1.000 38 | 330.0 1.300E-19 1.000 39 | 335.0 1.400E-19 1.000 40 | 340.0 1.600E-19 1.000 41 | 345.0 1.500E-19 1.000 42 | 350.0 1.600E-19 1.000 43 | 355.0 1.600E-19 1.000 44 | 360.0 1.800E-19 1.000 45 | 365.0 1.900E-19 1.000 46 | 370.0 1.700E-19 1.000 47 | 375.0 1.800E-19 1.000 48 | 380.0 1.700E-19 1.000 49 | 385.0 1.700E-19 1.000 50 | 390.0 1.600E-19 1.000 51 | 395.0 1.500E-19 1.000 52 | 400.0 1.400E-19 1.000 53 | 405.0 1.400E-19 1.000 54 | 410.0 1.300E-19 1.000 55 | 415.0 1.200E-19 1.000 56 | 420.0 1.100E-19 1.000 57 | 425.0 1.000E-19 1.000 58 | 430.0 9.000E-20 1.000 59 | 435.0 8.000E-20 1.000 60 | 440.0 7.000E-20 1.000 61 | 445.0 7.000E-20 1.000 62 | 450.0 6.000E-20 1.000 63 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/input/cb05e51_ae6_aq/NR_cb05e51_ae6_aq.nml: -------------------------------------------------------------------------------- 1 | ! RCS file, release, date & time of last delta, author, state, [and locker] 2 | ! $Header: /project/yoj/arc/MECHS/src/cb05tucl_ae6_aq/NR_cb05tucl_ae6_aq.nml,v 1.1 2011/04/06 16:57:21 sjr Exp $ 3 | 4 | &NR_nml 5 | 6 | n_surr1 = 4, 7 | n_surr2 = 2, 8 | n_ctrl = 4, 9 | 10 | TYPE_HEADER = 11 | 'SPC:MOLWT:EMIS_SUR:EMIS_FAC:DEPV_SUR:DEPV_FAC:ICBC_SUR:ICBC_FAC:SCAV_SUR:SCAV_FAC:N2AE_SUR:N2AQ_SUR:TRNS:DDEP:WDEP:CONC', 12 | TYPE_MATRIX = 13 | 'NH3: 17.0:NH3:1.0:VD_NH3:1.0:::NH3:1.0:NH3:NH3:Yes:Yes:Yes:Yes', 14 | 'SV_ALK1:225.0:::VD_SVALK1:1.0:::SVALK1:1.0:SV_ALK1::Yes:Yes:Yes:Yes', 15 | 'SV_ALK2:205.1:::VD_SVALK2:1.0:::SVALK2:1.0:SV_ALK2::Yes:Yes:Yes:Yes', 16 | 'SV_XYL1:174.0:::VD_SVXYL1:1.0:::SVXYL1:1.0:SV_XYL1::Yes:Yes:Yes:Yes', 17 | 'SV_XYL2:185.0:::VD_SVXYL2:1.0:::SVXYL2:1.0:SV_XYL2::Yes:Yes:Yes:Yes', 18 | 'SV_TOL1:163.0:::VD_SVTOL1:1.0:::SVTOL1:1.0:SV_TOL1::Yes:Yes:Yes:Yes', 19 | 'SV_TOL2:175.0:::VD_SVTOL2:1.0:::SVTOL2:1.0:SV_TOL2::Yes:Yes:Yes:Yes', 20 | 'SV_BNZ1:161.0:::VD_SVBNZ1:1.0:::SVBNZ1:1.0:SV_BNZ1::Yes:Yes:Yes:Yes', 21 | 'SV_BNZ2:134.0:::VD_SVBNZ2:1.0:::SVBNZ2:1.0:SV_BNZ2::Yes:Yes:Yes:Yes', 22 | 'SV_PAH1:195.6:::VD_SVPAH1:1.0:::SVPAH1:1.0:SV_PAH1::Yes:Yes:Yes:Yes', 23 | 'SV_PAH2:178.7:::VD_SVPAH2:1.0:::SVPAH2:1.0:SV_PAH2::Yes:Yes:Yes:Yes', 24 | 'SV_TRP1:177.0:::VD_SVTRP1:1.0:::SVTRP1:1.0:SV_TRP1::Yes:Yes:Yes:Yes', 25 | 'SV_TRP2:198.0:::VD_SVTRP2:1.0:::SVTRP2:1.0:SV_TRP2::Yes:Yes:Yes:Yes', 26 | 'SV_ISO1:132.0:::VD_SVISO1:1.0:::SVISO1:1.0:SV_ISO1::Yes:Yes:Yes:Yes', 27 | 'SV_ISO2:133.0:::VD_SVISO2:1.0:::SVISO2:1.0:SV_ISO2::Yes:Yes:Yes:Yes', 28 | 'SV_SQT:273.0:::VD_SVSQT:1.0:::SVSQT:1.0:SV_SQT::Yes:Yes:Yes:Yes', 29 | 'LV_PCSOG:170.0:::VD_ORA:1.0:::ADIPIC_ACID:1.0:LV_PCSOG::Yes:::Yes' 30 | / 31 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOmol_RADM88: -------------------------------------------------------------------------------- 1 | HCHOmol_RADM88 2 | ! Formaldehyde Photolysis to molecular hydrogen (HCHOmol) 3 | ! HCHO + hv -> H2 + CO 4 | ! Abs CS: Avg of Moortgat et al. [1980,1983] and Bass et al. [1980] 5 | ! QY from Moortgat et al. [1983]; Horowitz and Calvert [1978] 6 | ! format: wl, abs_cs, qy 7 | Beginning 8 | ! With FAC, units are (cm^2/molecule) 9 | FAC=1.0 10 | 246.914 0.000E+00 7.697E-03 11 | 250.000 3.910E-22 4.797E-01 12 | 253.165 1.183E-21 4.889E-01 13 | 256.410 2.807E-21 4.943E-01 14 | 259.740 5.063E-21 4.980E-01 15 | 263.158 5.548E-21 4.945E-01 16 | 266.667 9.348E-21 4.845E-01 17 | 270.270 1.160E-20 4.566E-01 18 | 273.973 1.602E-20 3.861E-01 19 | 277.778 1.584E-20 3.418E-01 20 | 281.690 2.267E-20 3.251E-01 21 | 285.714 2.126E-20 3.061E-01 22 | 289.855 2.264E-20 2.871E-01 23 | 294.118 2.988E-20 2.698E-01 24 | 298.500 1.523E-20 2.546E-01 25 | 302.500 2.281E-20 2.490E-01 26 | 303.500 6.326E-20 2.470E-01 27 | 304.500 4.668E-20 2.456E-01 28 | 305.500 4.497E-20 2.480E-01 29 | 306.500 2.035E-20 2.510E-01 30 | 307.500 1.412E-20 2.540E-01 31 | 308.500 2.959E-20 2.570E-01 32 | 309.500 1.745E-20 2.602E-01 33 | 310.500 7.280E-21 2.645E-01 34 | 311.500 1.340E-20 2.690E-01 35 | 312.500 1.247E-20 2.735E-01 36 | 313.500 3.917E-20 2.789E-01 37 | 314.500 3.947E-20 3.103E-01 38 | 317.500 1.526E-20 3.941E-01 39 | 322.500 2.110E-20 5.081E-01 40 | 327.500 1.923E-20 6.761E-01 41 | 332.500 2.134E-21 7.593E-01 42 | 337.500 1.632E-20 6.361E-01 43 | 342.500 6.668E-21 5.015E-01 44 | 347.500 1.519E-21 3.734E-01 45 | 352.500 7.166E-21 2.290E-01 46 | 357.500 9.075E-23 1.036E-01 47 | 362.500 0.000E+00 5.906E-03 48 | 367.500 0.000E+00 0.000E+00 49 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/OIO_06: -------------------------------------------------------------------------------- 1 | OIO_06 2 | ! OIO + HV = I + O2 3 | ! OIO Photolysis data 4 | ! Supplied by Golam Sarwar 5 | ! Created from NASA/JPL dataset 6 | Points (these data can be treated as point values) 7 | ! With FAC, units are (cm^2/molecule) 8 | FAC=1.0 9 | 516.0 8.330E-18 1.000 10 | 517.0 6.960E-18 1.000 11 | 518.0 5.650E-18 1.000 12 | 519.0 5.990E-18 1.000 13 | 520.0 7.190E-18 1.000 14 | 521.0 6.260E-18 1.000 15 | 522.0 5.730E-18 1.000 16 | 523.0 5.170E-18 1.000 17 | 524.0 4.960E-18 1.000 18 | 525.0 5.340E-18 1.000 19 | 526.0 7.540E-18 1.000 20 | 527.0 8.400E-18 1.000 21 | 528.0 6.970E-18 1.000 22 | 529.0 6.260E-18 1.000 23 | 530.0 6.510E-18 1.000 24 | 531.0 9.890E-18 1.000 25 | 532.0 1.012E-17 1.000 26 | 533.0 7.790E-18 1.000 27 | 534.0 6.360E-18 1.000 28 | 535.0 5.190E-18 1.000 29 | 536.0 6.430E-18 1.000 30 | 537.0 7.090E-18 1.000 31 | 538.0 6.480E-18 1.000 32 | 539.0 5.480E-18 1.000 33 | 540.0 4.700E-18 1.000 34 | 541.0 4.510E-18 1.000 35 | 542.0 4.940E-18 1.000 36 | 543.0 7.150E-18 1.000 37 | 544.0 8.170E-18 1.000 38 | 545.0 6.760E-18 1.000 39 | 546.0 5.820E-18 1.000 40 | 547.0 5.130E-18 1.000 41 | 548.0 6.650E-18 1.000 42 | 549.0 1.030E-17 1.000 43 | 550.0 8.420E-18 1.000 44 | 551.0 5.750E-18 1.000 45 | 552.0 4.290E-18 1.000 46 | 553.0 3.770E-18 1.000 47 | 554.0 6.090E-18 1.000 48 | 555.0 6.610E-18 1.000 49 | 556.0 6.040E-18 1.000 50 | 557.0 4.740E-18 1.000 51 | 558.0 3.930E-18 1.000 52 | 559.0 3.730E-18 1.000 53 | 560.0 3.500E-18 1.000 54 | 561.0 4.760E-18 1.000 55 | 562.0 7.690E-18 1.000 56 | 563.0 7.090E-18 1.000 57 | 564.0 5.240E-18 1.000 58 | 565.0 4.420E-18 1.000 59 | 566.0 3.840E-18 1.000 60 | 567.0 6.130E-18 1.000 61 | 568.0 9.370E-18 1.000 62 | 569.0 6.990E-18 1.000 63 | 570.0 4.750E-18 1.000 64 | 571.0 3.220E-18 1.000 65 | 572.0 2.240E-18 1.000 -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HCHOrad_CBIV88: -------------------------------------------------------------------------------- 1 | HCHOrad_CBIV88 2 | ! Formaldehyde Photolysis to radical (HCHOrad) 3 | ! HCHO + hv -> H + HCO 4 | ! Taken from Gery et al. (1988); Absorption CS from Bass (1980); QY from 5 | ! Calvert (1980) fit to his data and Moortgat and coworkers (1978, 1979). 6 | ! format: wl, abs_cs, qy 7 | Centered 8 | ! With FAC, units are (cm^2/molecule) 9 | FAC=1.0E-20 10 | 280 2.34 0.560 11 | 281 1.65 0.580 12 | 282 0.76 0.600 13 | 283 0.46 0.620 14 | 284 3.93 0.630 15 | 285 3.46 0.650 16 | 286 2.32 0.670 17 | 287 0.95 0.680 18 | 288 2.32 0.700 19 | 289 2.50 0.710 20 | 290 1.43 0.720 21 | 291 1.32 0.730 22 | 292 0.66 0.750 23 | 293 5.22 0.760 24 | 294 4.30 0.760 25 | 295 3.21 0.770 26 | 296 1.59 0.780 27 | 297 1.96 0.790 28 | 298 3.66 0.790 29 | 299 1.55 0.790 30 | 300 0.72 0.800 31 | 301 1.51 0.800 32 | 302 0.74 0.800 33 | 303 4.35 0.800 34 | 304 4.79 0.800 35 | 305 4.94 0.790 36 | 306 3.02 0.790 37 | 307 1.16 0.790 38 | 308 2.18 0.780 39 | 309 2.25 0.770 40 | 310 1.03 0.760 41 | 311 0.81 0.750 42 | 312 1.49 0.740 43 | 313 1.55 0.730 44 | 314 3.99 0.720 45 | 315 2.88 0.700 46 | 316 2.79 0.690 47 | 317 3.59 0.670 48 | 318 1.65 0.650 49 | 319 0.73 0.630 50 | 320 1.71 0.610 51 | 321 1.32 0.590 52 | 322 0.43 0.570 53 | 323 0.60 0.540 54 | 324 0.75 0.510 55 | 325 2.19 0.490 56 | 326 3.44 0.460 57 | 327 1.75 0.430 58 | 328 1.01 0.390 59 | 329 3.03 0.360 60 | 330 1.96 0.330 61 | 331 0.79 0.290 62 | 332 0.32 0.250 63 | 333 0.15 0.210 64 | 334 0.17 0.170 65 | 335 0.02 0.130 66 | 336 0.17 0.083 67 | 337 0.32 0.038 68 | 338 1.93 0.000 69 | 339 2.15 0.000 70 | 340 1.07 0.000 71 | 72 | -------------------------------------------------------------------------------- /UTIL/inline_phot_preproc/photolysis_CSQY_data/HNO4_06: -------------------------------------------------------------------------------- 1 | HNO4-06 2 | ! HO2NO2 + HV = PRODUCTS 3 | ! NASA (2011) 4 | ! 5 | Points (the mechanism evaluated with this format) 6 | ! With FAC, units are (cm^2/molecule) 7 | FAC=1.0 8 | 190.0 1.01e-17 1.000 9 | 195.0 8.16e-18 1.000 10 | 200.0 5.63e-18 1.000 11 | 205.0 3.67e-18 1.000 12 | 210.0 2.39e-18 1.000 13 | 215.0 1.61e-18 1.000 14 | 220.0 1.18e-18 1.000 15 | 225.0 9.35e-19 1.000 16 | 230.0 7.92e-19 1.000 17 | 235.0 6.83e-19 1.000 18 | 240.0 5.81e-19 1.000 19 | 245.0 4.90e-19 1.000 20 | 250.0 4.13e-19 1.000 21 | 255.0 3.50e-19 1.000 22 | 260.0 2.85e-19 1.000 23 | 265.0 2.30e-19 1.000 24 | 270.0 1.81e-19 1.000 25 | 275.0 1.34e-19 1.000 26 | 280.0 9.29e-20 1.000 27 | 282.0 8.11e-20 1.000 28 | 284.0 6.93e-20 1.000 29 | 286.0 5.86e-20 1.000 30 | 288.0 4.91e-20 1.000 31 | 290.0 3.95e-20 1.000 32 | 292.0 3.37e-20 1.000 33 | 294.0 2.78e-20 1.000 34 | 296.0 2.30e-20 1.000 35 | 298.0 1.91e-20 1.000 36 | 300.0 1.52e-20 1.000 37 | 302.0 1.28e-20 1.000 38 | 304.0 1.05e-20 1.000 39 | 306.0 8.53e-21 1.000 40 | 308.0 7.02e-21 1.000 41 | 310.0 5.51e-21 1.000 42 | 312.0 4.65e-21 1.000 43 | 314.0 3.80e-21 1.000 44 | 316.0 3.13e-21 1.000 45 | 318.0 2.65e-21 1.000 46 | 320.0 2.16e-21 1.000 47 | 322.0 1.84e-21 1.000 48 | 324.0 1.52e-21 1.000 49 | 326.0 1.28e-21 1.000 50 | 328.0 1.10e-21 1.000 51 | 330.0 9.26e-22 1.000 52 | 332.0 7.88e-22 1.000 53 | 334.0 6.50e-22 1.000 54 | 336.0 5.40e-22 1.000 55 | 338.0 4.56e-22 1.000 56 | 340.0 3.72e-22 1.000 57 | 342.0 3.20e-22 1.000 58 | 344.0 2.68e-22 1.000 59 | 346.0 2.28e-22 1.000 60 | 348.0 1.98e-22 1.000 61 | 350.0 1.68e-22 1.000 62 | 351.0 0.000000 0.000 63 | --------------------------------------------------------------------------------