├── INSTALL_VTrails.m ├── LICENSE ├── README ├── README.md ├── docs ├── _config.yml ├── imgs │ ├── ImageList │ └── VTrails_logo_github.png └── index.md ├── libs ├── 0_NIfTI_IO │ ├── FAQ.pdf │ ├── NIfTI_tools.pdf │ ├── UseANALYZE.pdf │ ├── affine.m │ ├── bipolar.m │ ├── bresenham_line3d.m │ ├── clip_nii.m │ ├── collapse_nii_scan.m │ ├── examples.txt │ ├── expand_nii_scan.m │ ├── extra_nii_hdr.m │ ├── flip_lr.m │ ├── get_nii_frame.m │ ├── license.txt │ ├── load_nii.m │ ├── load_nii_ext.m │ ├── load_nii_hdr.m │ ├── load_nii_img.m │ ├── load_untouch0_nii_hdr.m │ ├── load_untouch_header_only.m │ ├── load_untouch_nii.m │ ├── load_untouch_nii_hdr.m │ ├── load_untouch_nii_img.m │ ├── make_ana.m │ ├── make_nii.m │ ├── mat_into_hdr.m │ ├── pad_nii.m │ ├── reslice_nii.m │ ├── rri_file_menu.m │ ├── rri_orient.m │ ├── rri_orient_ui.m │ ├── rri_select_file.m │ ├── rri_xhair.m │ ├── rri_zoom_menu.m │ ├── save_nii.m │ ├── save_nii_ext.m │ ├── save_nii_hdr.m │ ├── save_untouch0_nii_hdr.m │ ├── save_untouch_header_only.m │ ├── save_untouch_nii.m │ ├── save_untouch_nii_hdr.m │ ├── save_untouch_slice.m │ ├── unxform_nii.m │ ├── verify_nii_ext.m │ ├── view_nii.m │ ├── view_nii_menu.m │ └── xform_nii.m ├── 1_ImageFilter_MEXCompiler │ ├── VTF3D_computeGradients2ndOrd.m │ ├── VTF3D_computeGradients2ndOrd.prj │ ├── VTF3D_configTFSynthesis.m │ ├── VTF3D_configTFSynthesis.prj │ ├── VTF3D_eigenDecompBlock3D.m │ ├── VTF3D_eigenDecompBlock3D.prj │ ├── VTF3D_synthTF.m │ └── VTF3D_synthTF.prj ├── 2_GeodesicConnect_MEXCompiler │ ├── AnisotropicFastMarching4Graph │ │ ├── AnisotropicFastMarching4Graph.cpp │ │ ├── Auxillary4Graph.cpp │ │ ├── COPYRIGHT │ │ ├── README │ │ ├── UpdateNeighborhood4Graph.cpp │ │ ├── mxAnisoDistanceTransform4Graph.cpp │ │ └── mxAnisoDistanceTransform4Graph.h │ ├── Gradient3D │ │ ├── gradient3Dcpp.m │ │ └── gradient3Dcpp.prj │ └── Linterp │ │ ├── boost_1_49_0_split.z01 │ │ ├── boost_1_49_0_split.z02 │ │ ├── boost_1_49_0_split.z03 │ │ ├── boost_1_49_0_split.z04 │ │ ├── boost_1_49_0_split.zip │ │ └── rncarpio-linterp-ca556a0.zip ├── 3_RefineTree_MEXCompiler │ ├── VTR3D_getPairs2BeEvaluated.m │ ├── VTR3D_getPairs2BeEvaluated.prj │ ├── VTR3D_notUnique.m │ ├── VTR3D_notUnique.prj │ ├── VTR3D_repeatedValue.m │ ├── VTR3D_repeatedValue.prj │ ├── VTR3D_repeatedValueSymm.m │ └── VTR3D_repeatedValueSymm.prj ├── DFKs_MAIN.mat ├── VTA3D_visualiseConnectingGeodesicGraph.m ├── VTA3D_visualiseGeodesicMinimumSpanningTree.m ├── VTA3D_visualiseRiemannianVesselness.m ├── VTF3D_AlignVesselSeeds3D.m ├── VTF3D_IntegrateMaxMultiScaleResponses.m └── VTF3D_SortConnectedComponents.m ├── main ├── PIPELINE.m ├── VTrailsConnectingGeodesicGraph3D_MAIN.m ├── VTrailsFilter3D_MAIN.m └── VTrailsRefine3D_ConnectedGraph2VTrailsTree_MAIN.m └── test_imgs ├── VTrailsDEMO_01.m ├── VTrailsDEMO_02.m ├── test_img01.nii.gz └── test_img02.nii.gz /INSTALL_VTrails.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/INSTALL_VTrails.m -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/LICENSE -------------------------------------------------------------------------------- /README: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/README -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/README.md -------------------------------------------------------------------------------- /docs/_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/docs/_config.yml -------------------------------------------------------------------------------- /docs/imgs/ImageList: -------------------------------------------------------------------------------- 1 | List here the Images: 2 | - VTrails Logo 3 | -------------------------------------------------------------------------------- /docs/imgs/VTrails_logo_github.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/docs/imgs/VTrails_logo_github.png -------------------------------------------------------------------------------- /docs/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/docs/index.md -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/FAQ.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/FAQ.pdf -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/NIfTI_tools.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/NIfTI_tools.pdf -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/UseANALYZE.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/UseANALYZE.pdf -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/affine.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/affine.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/bipolar.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/bipolar.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/bresenham_line3d.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/bresenham_line3d.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/clip_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/clip_nii.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/collapse_nii_scan.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/collapse_nii_scan.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/examples.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/examples.txt -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/expand_nii_scan.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/expand_nii_scan.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/extra_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/extra_nii_hdr.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/flip_lr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/flip_lr.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/get_nii_frame.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/get_nii_frame.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/license.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/license.txt -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/load_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/load_nii.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/load_nii_ext.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/load_nii_ext.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/load_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/load_nii_hdr.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/load_nii_img.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/load_nii_img.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/load_untouch0_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/load_untouch0_nii_hdr.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/load_untouch_header_only.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/load_untouch_header_only.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/load_untouch_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/load_untouch_nii.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/load_untouch_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/load_untouch_nii_hdr.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/load_untouch_nii_img.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/load_untouch_nii_img.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/make_ana.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/make_ana.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/make_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/make_nii.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/mat_into_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/mat_into_hdr.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/pad_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/pad_nii.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/reslice_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/reslice_nii.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/rri_file_menu.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/rri_file_menu.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/rri_orient.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/rri_orient.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/rri_orient_ui.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/rri_orient_ui.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/rri_select_file.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/rri_select_file.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/rri_xhair.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/rri_xhair.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/rri_zoom_menu.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/rri_zoom_menu.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/save_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/save_nii.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/save_nii_ext.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/save_nii_ext.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/save_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/save_nii_hdr.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/save_untouch0_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/save_untouch0_nii_hdr.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/save_untouch_header_only.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/save_untouch_header_only.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/save_untouch_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/save_untouch_nii.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/save_untouch_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/save_untouch_nii_hdr.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/save_untouch_slice.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/save_untouch_slice.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/unxform_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/unxform_nii.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/verify_nii_ext.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/verify_nii_ext.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/view_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/view_nii.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/view_nii_menu.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/view_nii_menu.m -------------------------------------------------------------------------------- /libs/0_NIfTI_IO/xform_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/0_NIfTI_IO/xform_nii.m -------------------------------------------------------------------------------- /libs/1_ImageFilter_MEXCompiler/VTF3D_computeGradients2ndOrd.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/1_ImageFilter_MEXCompiler/VTF3D_computeGradients2ndOrd.m -------------------------------------------------------------------------------- /libs/1_ImageFilter_MEXCompiler/VTF3D_computeGradients2ndOrd.prj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/1_ImageFilter_MEXCompiler/VTF3D_computeGradients2ndOrd.prj -------------------------------------------------------------------------------- /libs/1_ImageFilter_MEXCompiler/VTF3D_configTFSynthesis.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/1_ImageFilter_MEXCompiler/VTF3D_configTFSynthesis.m -------------------------------------------------------------------------------- /libs/1_ImageFilter_MEXCompiler/VTF3D_configTFSynthesis.prj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/1_ImageFilter_MEXCompiler/VTF3D_configTFSynthesis.prj -------------------------------------------------------------------------------- /libs/1_ImageFilter_MEXCompiler/VTF3D_eigenDecompBlock3D.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/1_ImageFilter_MEXCompiler/VTF3D_eigenDecompBlock3D.m -------------------------------------------------------------------------------- /libs/1_ImageFilter_MEXCompiler/VTF3D_eigenDecompBlock3D.prj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/1_ImageFilter_MEXCompiler/VTF3D_eigenDecompBlock3D.prj -------------------------------------------------------------------------------- /libs/1_ImageFilter_MEXCompiler/VTF3D_synthTF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/1_ImageFilter_MEXCompiler/VTF3D_synthTF.m -------------------------------------------------------------------------------- /libs/1_ImageFilter_MEXCompiler/VTF3D_synthTF.prj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/1_ImageFilter_MEXCompiler/VTF3D_synthTF.prj -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/AnisotropicFastMarching4Graph.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/AnisotropicFastMarching4Graph.cpp -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/Auxillary4Graph.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/Auxillary4Graph.cpp -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/COPYRIGHT: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/COPYRIGHT -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/README: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/README -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/UpdateNeighborhood4Graph.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/UpdateNeighborhood4Graph.cpp -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/mxAnisoDistanceTransform4Graph.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/mxAnisoDistanceTransform4Graph.cpp -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/mxAnisoDistanceTransform4Graph.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/AnisotropicFastMarching4Graph/mxAnisoDistanceTransform4Graph.h -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/Gradient3D/gradient3Dcpp.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/Gradient3D/gradient3Dcpp.m -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/Gradient3D/gradient3Dcpp.prj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/Gradient3D/gradient3Dcpp.prj -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/Linterp/boost_1_49_0_split.z01: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/Linterp/boost_1_49_0_split.z01 -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/Linterp/boost_1_49_0_split.z02: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/Linterp/boost_1_49_0_split.z02 -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/Linterp/boost_1_49_0_split.z03: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/Linterp/boost_1_49_0_split.z03 -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/Linterp/boost_1_49_0_split.z04: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/Linterp/boost_1_49_0_split.z04 -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/Linterp/boost_1_49_0_split.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/Linterp/boost_1_49_0_split.zip -------------------------------------------------------------------------------- /libs/2_GeodesicConnect_MEXCompiler/Linterp/rncarpio-linterp-ca556a0.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/2_GeodesicConnect_MEXCompiler/Linterp/rncarpio-linterp-ca556a0.zip -------------------------------------------------------------------------------- /libs/3_RefineTree_MEXCompiler/VTR3D_getPairs2BeEvaluated.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/3_RefineTree_MEXCompiler/VTR3D_getPairs2BeEvaluated.m -------------------------------------------------------------------------------- /libs/3_RefineTree_MEXCompiler/VTR3D_getPairs2BeEvaluated.prj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/3_RefineTree_MEXCompiler/VTR3D_getPairs2BeEvaluated.prj -------------------------------------------------------------------------------- /libs/3_RefineTree_MEXCompiler/VTR3D_notUnique.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/3_RefineTree_MEXCompiler/VTR3D_notUnique.m -------------------------------------------------------------------------------- /libs/3_RefineTree_MEXCompiler/VTR3D_notUnique.prj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/3_RefineTree_MEXCompiler/VTR3D_notUnique.prj -------------------------------------------------------------------------------- /libs/3_RefineTree_MEXCompiler/VTR3D_repeatedValue.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/3_RefineTree_MEXCompiler/VTR3D_repeatedValue.m -------------------------------------------------------------------------------- /libs/3_RefineTree_MEXCompiler/VTR3D_repeatedValue.prj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/3_RefineTree_MEXCompiler/VTR3D_repeatedValue.prj -------------------------------------------------------------------------------- /libs/3_RefineTree_MEXCompiler/VTR3D_repeatedValueSymm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/3_RefineTree_MEXCompiler/VTR3D_repeatedValueSymm.m -------------------------------------------------------------------------------- /libs/3_RefineTree_MEXCompiler/VTR3D_repeatedValueSymm.prj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/3_RefineTree_MEXCompiler/VTR3D_repeatedValueSymm.prj -------------------------------------------------------------------------------- /libs/DFKs_MAIN.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/DFKs_MAIN.mat -------------------------------------------------------------------------------- /libs/VTA3D_visualiseConnectingGeodesicGraph.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/VTA3D_visualiseConnectingGeodesicGraph.m -------------------------------------------------------------------------------- /libs/VTA3D_visualiseGeodesicMinimumSpanningTree.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/VTA3D_visualiseGeodesicMinimumSpanningTree.m -------------------------------------------------------------------------------- /libs/VTA3D_visualiseRiemannianVesselness.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/VTA3D_visualiseRiemannianVesselness.m -------------------------------------------------------------------------------- /libs/VTF3D_AlignVesselSeeds3D.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/VTF3D_AlignVesselSeeds3D.m -------------------------------------------------------------------------------- /libs/VTF3D_IntegrateMaxMultiScaleResponses.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/VTF3D_IntegrateMaxMultiScaleResponses.m -------------------------------------------------------------------------------- /libs/VTF3D_SortConnectedComponents.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/libs/VTF3D_SortConnectedComponents.m -------------------------------------------------------------------------------- /main/PIPELINE.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/main/PIPELINE.m -------------------------------------------------------------------------------- /main/VTrailsConnectingGeodesicGraph3D_MAIN.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/main/VTrailsConnectingGeodesicGraph3D_MAIN.m -------------------------------------------------------------------------------- /main/VTrailsFilter3D_MAIN.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/main/VTrailsFilter3D_MAIN.m -------------------------------------------------------------------------------- /main/VTrailsRefine3D_ConnectedGraph2VTrailsTree_MAIN.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/main/VTrailsRefine3D_ConnectedGraph2VTrailsTree_MAIN.m -------------------------------------------------------------------------------- /test_imgs/VTrailsDEMO_01.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/test_imgs/VTrailsDEMO_01.m -------------------------------------------------------------------------------- /test_imgs/VTrailsDEMO_02.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/test_imgs/VTrailsDEMO_02.m -------------------------------------------------------------------------------- /test_imgs/test_img01.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/test_imgs/test_img01.nii.gz -------------------------------------------------------------------------------- /test_imgs/test_img02.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VTrails/VTrailsToolkit/HEAD/test_imgs/test_img02.nii.gz --------------------------------------------------------------------------------