├── LICENSE ├── README.md ├── examples ├── cn_table_example.tsv ├── snv_table_example.tsv └── subclone_table_example.tsv ├── gritic ├── __init__.py ├── dataloader.py ├── distributiontools.py ├── gritictimer.py ├── hitandrun.py ├── multiplicityoptimiser.py ├── posteriortablegen.py ├── route_tree.py ├── sampletools.py ├── timingranges.py ├── treegenerator.py └── treetools.py ├── rungritic.py ├── rungritic_cmd.py └── setup.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VanLoo-lab/gritic/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VanLoo-lab/gritic/HEAD/README.md -------------------------------------------------------------------------------- /examples/cn_table_example.tsv: 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