├── .gitignore ├── LICENSE ├── README.md ├── data ├── esm2_t33_650M_UR50D.json └── protein_sequences.csv ├── downstream ├── Antibody │ ├── flab │ │ ├── README.md │ │ └── finetune_flab.py │ └── in_silico │ │ ├── README.md │ │ ├── finetune_in_silico.py │ │ └── rcsb_pdb_2G75.fasta ├── CovidVariants │ ├── README.md │ ├── calculate_metrics.ipynb │ ├── prepare_data.ipynb │ └── train.py ├── GeneralPPI │ ├── README.md │ ├── SKEMPI_v2 │ │ ├── README.md │ │ └── prepare_data.ipynb │ ├── baselines.py │ ├── embeddings_baselines.py │ ├── embeddings_mint.py │ ├── finetune_general.py │ ├── human-ppi │ │ ├── README.md │ │ └── prepare_data.ipynb │ ├── mutational-ppi │ │ ├── README.md │ │ └── prepare_data.ipynb │ ├── pdb-bind │ │ ├── README.md │ │ └── prepare_data.ipynb │ ├── ppi │ │ ├── README.md │ │ └── prepare_data.ipynb │ ├── tasks.py │ └── yeast-ppi │ │ ├── README.md │ │ └── prepare_data.ipynb ├── TCR-Epitope │ ├── tcr-interface │ │ ├── README.md │ │ ├── teim_utils.py │ │ ├── train_res.py │ │ └── 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