├── .github └── workflows │ ├── build.yml │ ├── deploy.yml │ ├── filesize.yml │ └── release.yml ├── .gitignore ├── Dockerfile ├── LICENSE ├── README.md ├── demo ├── README.md ├── app.py ├── requirements.txt └── src │ ├── __init__.py │ ├── compute.py │ ├── convert.py │ ├── gui.py │ └── utils.py ├── lungtumormask ├── __init__.py ├── __main__.py ├── dataprocessing.py ├── mask.py └── network.py ├── setup.cfg ├── setup.py └── training ├── .gitignore ├── Engine ├── __init__.py ├── evaluate.py ├── inference.py ├── seg_test.py ├── train.py └── utils.py ├── LICENSE ├── Networks ├── UNet4.py ├── UNet5_Teacher.py ├── UNet5_decoder_teacher.py ├── UNet5_filter_teacher.py ├── UNet_concat_double_student.py ├── UNet_test.py ├── __init__.py ├── monai_student.py ├── monai_unet.py └── network.py ├── README.md ├── Resources ├── Evaluate │ └── malvik.yaml ├── Idun_Train_1 │ ├── cropped.yaml │ ├── full_size.yaml │ ├── train_25.yaml │ ├── train_50.yaml │ ├── train_75.yaml │ ├── train_full_filter_cropped.yaml │ ├── train_full_filter_full_image.yaml │ └── train_half_filter_cropped.yaml ├── Idun_Train_2 │ ├── data.yaml │ ├── lungdx_data.yaml │ ├── msd_data.yaml │ ├── train_16.yaml │ ├── train_32.yaml │ ├── train_48.yaml │ ├── train_64.yaml │ ├── train_focal.yaml │ ├── train_tversky.yaml │ ├── train_ud.yaml │ └── train_us.yaml ├── Inference │ ├── inference.yaml │ ├── malvik.yaml │ ├── malvik_inference_data.yaml │ ├── malvik_inference_data2.yaml │ └── teacher_inference_data.yaml ├── Malvik │ ├── inference.yaml │ ├── inference_data.yaml │ ├── lungdx_dataset.yaml │ ├── msd_dataset.yaml │ ├── student.yaml │ ├── teacher.yaml │ └── teacher_data.yaml ├── Malvik_train_1 │ ├── config_fullfeature_cropped.yaml │ ├── cropped.yaml │ ├── standard.yaml │ ├── test.yaml │ └── test_data.yaml ├── Student_Train │ ├── data.yaml │ ├── data_test.yaml │ └── train.yaml ├── Test │ ├── data_inference.yaml │ ├── data_test_train.yaml │ ├── test_inference.yaml │ └── test_train.yaml ├── Windows_Files │ ├── evaluate_data.yaml │ ├── evaluate_data_msd.yaml │ └── win_eval.yaml └── requirements.txt ├── Runable ├── Evaluate │ ├── eval.py │ └── eval_malvik.py ├── Inference │ └── inference.py ├── Test │ ├── inf_test.py │ └── test_sevlus.py ├── Train │ ├── train_16.py │ ├── train_25.py │ ├── train_32.py │ ├── train_48.py │ ├── train_50.py │ ├── train_64.py │ ├── train_75.py │ ├── train_focal.py │ ├── train_full_images.py │ ├── train_half_filter.py │ ├── train_student.py │ ├── train_tver.py │ ├── train_ud.py │ └── train_us.py └── __init__.py ├── Utils ├── MSD_utilities.py ├── PETCT_LungDx_utilities.py ├── __init__.py ├── conv_to_win.py ├── crop.py ├── crop_lungs.py ├── fileconverter.py ├── plot.py ├── radiomics_formatting.py ├── segment_to_segmentbox.py └── volume_histogram.py ├── interface.py └── setup.py /.github/workflows/build.yml: -------------------------------------------------------------------------------- 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