├── .gitignore ├── .readthedocs.yaml ├── LICENSE ├── README.md ├── docs ├── Makefile ├── img │ └── BrightEyesISMlogo.jpg ├── make.bat ├── requirements.txt └── source │ ├── brighteyes_ism.analysis.APR_lib.rst │ ├── brighteyes_ism.analysis.Deconv_lib.rst │ ├── brighteyes_ism.analysis.FRC_lib.rst │ ├── brighteyes_ism.analysis.FocusISM_lib.rst │ ├── brighteyes_ism.analysis.Graph_lib.rst │ ├── brighteyes_ism.analysis.Tools_lib.rst │ ├── brighteyes_ism.analysis.rst │ ├── brighteyes_ism.dataio.mcs.rst │ ├── brighteyes_ism.dataio.rst │ ├── brighteyes_ism.rst │ ├── brighteyes_ism.simulation.PSF_sim.rst │ ├── brighteyes_ism.simulation.Tubulin_sim.rst │ ├── brighteyes_ism.simulation.detector.rst │ ├── brighteyes_ism.simulation.rst │ ├── brighteyes_ism.simulation.simulator.rst │ ├── conf.py │ ├── index.rst │ ├── installation.rst │ └── modules.rst ├── examples ├── BrightEyes_ISM_analysis_demo.ipynb └── BrightEyes_ISM_simulation_demo.ipynb ├── pyproject.toml ├── requirements.txt ├── setup.cfg ├── setup.py ├── src └── brighteyes_ism │ ├── __init__.py │ ├── analysis │ ├── APR_lib.py │ ├── Deconv_lib.py │ ├── FRC_lib.py │ ├── FocusISM_lib.py │ ├── Graph_lib.py │ ├── Tools_lib.py │ └── __init__.py │ ├── dataio │ ├── __init__.py │ └── mcs.py │ └── simulation │ ├── PSF_sim.py │ ├── Tubulin_sim.py │ ├── __init__.py │ ├── detector.py │ ├── simulator.py │ └── utils.py └── tox.ini /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VicidominiLab/BrightEyes-ISM/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/VicidominiLab/BrightEyes-ISM/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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