├── .gitignore ├── LICENSE ├── README.rst ├── RNAsketch ├── Design.py ├── HotKnots.py ├── RNARedPrintSampler.py ├── RNAshapes.py ├── State.py ├── Structure.py ├── __init__.py ├── nupack.py └── pKiss.py ├── bin ├── design-cofold.py ├── design-energyshift.py ├── design-generategraphml.py ├── design-ligand_switch.py ├── design-ligandswitch.py ├── design-multistate.py ├── design-printgraphml.py ├── design-redprint-multistate.py └── design-thermoswitch.py ├── doc ├── Makefile ├── classes.rst ├── conf.py ├── data │ ├── barriers.png │ ├── cofold.png │ ├── energyshift.png │ ├── graph.png │ ├── ligandswitch.png │ └── thermoswitch.png ├── index.rst ├── module.rst ├── rnasketch.png └── rnasketch.svg ├── setup.py └── tests ├── __init__.py ├── test_Design.py └── test_State.py /.gitignore: -------------------------------------------------------------------------------- 1 | *.pyc 2 | -------------------------------------------------------------------------------- /LICENSE: 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