├── LICENSE ├── README.md ├── forna.py ├── forna_db.py ├── forna_server.py ├── gallery ├── .adenine_riboswitch.un~ ├── 1MFQ.svg ├── 1MFQ_arbitrary_coloring.png ├── 1MFQ_arbitrary_coloring.svg ├── 1S72.json ├── 1S72_by_position.svg ├── 1S72_by_structure.svg ├── 4FAW_by_structure.svg ├── 4faw.png ├── adenine_riboswitch ├── adenine_riboswitch_probing.png ├── adenine_riboswitch_probing.svg ├── copa_copt.fa ├── drawing_an_rna_from_scratch.png ├── drawing_an_rna_from_scratch.svg ├── kissing_hairpins.fa ├── kissing_hairpins.png ├── kissing_hairpins.svg ├── mir21.png ├── probing_examples.png ├── probing_examples.svg ├── pseudoknots.png ├── pseudoknots.svg ├── rna_probing_1.input ├── rna_probing_1.png ├── rna_probing_2.input ├── rna_probing_2.png ├── rna_probing_2.svg ├── two_pseudoknots.png └── two_pseudoknots.svg ├── htdocs ├── .htaccess ├── css │ ├── bootstrap-slider.min.css │ ├── bootstrap-switch.css │ ├── bootstrap-theme.css │ ├── bootstrap-theme.css.map │ ├── bootstrap-theme.min.css │ ├── bootstrap.css │ ├── bootstrap.css.map │ ├── bootstrap.min.css │ ├── fornac.css │ └── interface.css ├── favicon.ico ├── fonts │ ├── glyphicons-halflings-regular.eot │ ├── glyphicons-halflings-regular.svg │ ├── glyphicons-halflings-regular.ttf │ └── glyphicons-halflings-regular.woff ├── img │ ├── favicon-16x16.png │ ├── favicon-192x192.png │ ├── favicon-32x32.png │ ├── favicon.svg │ ├── forna-container-screenshot.png │ └── icon-128.png ├── index.html ├── js │ ├── FileSaver.min.js │ ├── bootstrap-slider.min.js │ ├── bootstrap-switch.js │ ├── bootstrap.js │ ├── bootstrap.min.js │ ├── d3.js │ ├── d3.tip.v0.6.3.js │ ├── fornac.js │ ├── interface.js │ ├── jquery.js │ ├── knockout-3.2.0.js │ ├── knockout-bindings.js │ ├── saveSvgAsPng.js │ └── tests.js ├── manifest.webapp └── sitemap.xml └── test ├── __init__.py ├── data ├── 1MFQ.pdb ├── 3UZT.pdb ├── 4GV9.pdb ├── rna.fasta └── rna.json ├── forna_test.py └── restserver_test.py /LICENSE: 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