├── .gitignore ├── LICENSE ├── Python └── tests │ └── manual_test_imsave.py ├── README.md ├── environment-CUDA.yml ├── environment-no-CUDA.yml ├── examples ├── 00_Lattice_Light_Sheet_Deskew.ipynb ├── 01_Lattice_Light_Sheet_Deconvolution.ipynb ├── 02_Batch_Process.ipynb ├── cProfile.ipynb ├── find_PSF_support.ipynb └── notebook_illustrations │ ├── angle_post_scaling.JPG │ ├── angle_pre_scaling.JPG │ ├── cards1.jpg │ ├── cards2.jpg │ └── cards3.jpg ├── folder_structure.md ├── lls_dd ├── __init__.py ├── batch_run.py ├── cmdline.py ├── deconv_gputools.py ├── deconvolution.py ├── experiment_folder.py ├── extract_metadata.py ├── fixed_settings.json ├── gputools_wrapper.py ├── imsave.py ├── plain_deconv_test.py ├── process_llsm_experiment.py ├── psf_tools.py ├── requirements.txt ├── settings.py ├── transform_helpers.py ├── transforms.py └── utils.py ├── readme_illustration.png └── setup.py /.gitignore: -------------------------------------------------------------------------------- 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