├── .gitignore ├── Intervar.py ├── README.md ├── config.ini ├── docs ├── favicon.ico ├── img │ └── new.png ├── index.md ├── misc │ ├── contributing.md │ ├── credit.md │ ├── faq.md │ └── whatsnew.md └── user-guide │ ├── download.md │ ├── manual.md │ └── startup.md ├── example └── ex1.avinput ├── intervardb ├── BP1.genes.hg19 ├── BP1.genes.hg38 ├── BS2_hom_het.hg19 ├── BS2_hom_het.hg38 ├── PM1_domains_with_benigns.hg19 ├── PM1_domains_with_benigns.hg38 ├── PP2.genes.hg19 ├── PP2.genes.hg38 ├── PS1.AA.change.patho.hg19 ├── PS1.AA.change.patho.hg38 ├── PS4.variants.hg19 ├── PS4.variants.hg38 ├── PVS1.LOF.genes.hg19 ├── PVS1.LOF.genes.hg38 ├── ext.variants.hg19 ├── ext.variants.hg38 ├── knownGeneCanonical.txt.hg19 ├── knownGeneCanonical.txt.hg38 ├── mim_adultonset.txt ├── mim_domin.txt ├── mim_orpha.txt ├── mim_pheno.txt ├── mim_recessive.txt ├── orpha.txt └── orpha.txt.utf8 └── mkdocs.yml /.gitignore: -------------------------------------------------------------------------------- 1 | # Byte-compiled / optimized / DLL files 2 | __pycache__/ 3 | *.py[cod] 4 | 5 | # C extensions 6 | *.so 7 | 8 | # Distribution / packaging 9 | .Python 10 | env/ 11 | build/ 12 | develop-eggs/ 13 | dist/ 14 | downloads/ 15 | eggs/ 16 | .eggs/ 17 | lib/ 18 | lib64/ 19 | parts/ 20 | sdist/ 21 | var/ 22 | *.egg-info/ 23 | .installed.cfg 24 | *.egg 25 | 26 | # PyInstaller 27 | # Usually these files are written by a python script from a template 28 | # before PyInstaller builds the exe, so as to inject date/other infos into it. 29 | *.manifest 30 | *.spec 31 | 32 | # Installer logs 33 | pip-log.txt 34 | pip-delete-this-directory.txt 35 | 36 | # Unit test / coverage reports 37 | htmlcov/ 38 | .tox/ 39 | .coverage 40 | .coverage.* 41 | .cache 42 | nosetests.xml 43 | coverage.xml 44 | *,cover 45 | 46 | # Translations 47 | *.mo 48 | *.pot 49 | 50 | # Django stuff: 51 | *.log 52 | 53 | # Sphinx documentation 54 | docs/_build/ 55 | 56 | # PyBuilder 57 | target/ 58 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # InterVar 2 | A bioinformatics software tool for clinical interpretation of genetic variants by the ACMG-AMP 2015 guidelines 3 | 4 | ## SYNOPSIS 5 | 6 | Intervar.py [options] 7 | 8 | ## WHAT DOES IT DO 9 | 10 | InterVar is a python script for variant interpretation of clinical significance. 11 | 12 | ## PREREQUISITE 13 | 14 | 1. You need install Python >=2.6.6. 15 | 2. You need install [ANNOVAR](http://annovar.openbioinformatics.org/en/latest/) version >= 2016-02-01. 16 | 3. You need download other files such as mim2gene.txt from [OMIM](http://www.omim.org/downloads). 17 | 4. Please use the updated files(should be generated: >= 2016-09) from OMIM, outdated files will bring problems of InterVar. 18 | 19 | ## OPTIONS 20 | 21 | - -h, --help 22 | show this help message and exit 23 | 24 | - --version 25 | show program''s version number and exit 26 | 27 | - --config=config.ini 28 | Load your config file. The config file contains all options. 29 | 30 | if you use this options,you can ignore all the other options bellow. 31 | 32 | - -i INPUTFILE, --input=INPUTFILE 33 | input file of variants for analysis 34 | 35 | - --input_type=AVinput 36 | The input file type, it can be AVinput(Annovar''sformat),VCF 37 | 38 | - -o OUTPUTFILE, --output=OUTPUTFILE 39 | prefix the output file (default:output) 40 | 41 | - -b BUILDVER, --buildver=BUILDVER 42 | version of reference genome: hg18, hg19(default) 43 | 44 | - -t intervardb, --database_intervar=intervardb 45 | The database location/dir for the InterVar dataset files 46 | 47 | - -s your_evidence_file, --evidence_file=your_evidence_file 48 | 49 | This potion is for user specified evidence file for each variant, 50 | 51 | How to add your own Evidence for each Variant: 52 | 53 | Prepare your own evidence file as tab-delimited,the line format: 54 | 55 | (The code for additional evidence should be as: PS5/PM7/PP6/BS5/BP8 ; 56 | 57 | The format for upgrad/downgrade of criteria should be like: 58 | 59 | grade_PS1=2; 1 for Strong; 2 for Moderate; 3 for Supporting) 60 | 61 | ``` 62 | Chr Pos Ref_allele Alt_allele evidence_list 63 | 64 | 1 123456 A G PM1=1;BS2=1;BP3=0;PS5=1;grade_PM1=1 65 | ``` 66 | 67 | - --table_annovar=./table_annovar.pl 68 | The Annovar perl script of table_annovar.pl 69 | 70 | - --convert2annovar=./convert2annovar.pl 71 | The Annovar perl script of convert2annovar.pl 72 | 73 | - --annotate_variation=./annotate_variation.pl 74 | The Annovar perl script of annotate_variation.pl 75 | 76 | - -d humandb, --database_locat=humandb 77 | The database location/dir for the Annovar annotation datasets 78 | 79 | 80 | ## EXAMPLE 81 | ``` 82 | ./InterVar.py -c config.ini # Run the examples in config.ini 83 | ./InterVar.py -b hg19 -i your_input --input_type=VCF -o your_output 84 | ``` 85 | 86 | ## HOW DOES IT WORK 87 | 88 | InterVar takes either pre-annotated files, or unannotated input files in VCF format or ANNOVAR input format, where each line corresponds to one genetic variant; if the input files are unannotated, InterVar will call ANNOVAR to generate necessary annotations. The execution of InterVar mainly consists of two major steps: 1) automatically interpret 28 evidence codes; and 2) manual adjustment by users to re-interpret the clinical significance. However, users can specify their own evidence code and import into InterVar by using the argument "-evidence_file=your_evidence_file" so that one single step is sufficient to generate the final results. In the output, based on all 28 pieces of evidence codes that are either automatically generated or supplied by the user, each variant will be assigned as "pathogenic", "likely pathogenic", "uncertain significance", "likely benign" or "benign" by rules specified in the ACMG2015 guidelines 24. 89 | 90 | We also developed a web server of InterVar called wInterVar, which can be accessed at [http://wintervar.wglab.org](http://wintervar.wglab.org). The user can directly input their missense variants in wInterVar by chromosomal position, by dbSNP identifier, or by gene name with nucleic acid change information. The wInterVar server will provide full details on the variants, including all the evidence codes for the variants. The user then has the ability to manually adjust these evidence codes and resubmit to the server to perform re-interpretation. Since all evidence codes for all possible non-synonymous variants have been pre-computed by us, the execution of wInterVar is very fast, typically less than 1 second to obtain the results. However, the wInterVar server cannot process other types of variants (such as indels), and the user will need to use InterVar instead. 91 | 92 | ## Web server 93 | wInterVar: [http://wintervar.wglab.org](http://wintervar.wglab.org) 94 | 95 | ## LICENSE 96 | 97 | InterVar is free for non-commercial use without warranty. Users need to obtain licenses such as OMIM and ANNOVAR by themselves. Please contact the authors for commercial use. 98 | 99 | ## REFERENCE 100 | Quan Li and Kai Wang. InterVar: Clinical interpretation of genetic variants by ACMG-AMP 2015 guideline. The American Journal of Human Genetics 100(2):267-280, 2017,[http://dx.doi.org/10.1016/j.ajhg.2017.01.004](http://dx.doi.org/10.1016/j.ajhg.2017.01.004) 101 | 102 | [The ACMG 2015 guide](http://www.ncbi.nlm.nih.gov/pubmed/25741868) 103 | Richards, S. et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genetics in medicine : official journal of the American College of Medical Genetics 17, 405-424 (2015). 104 | 105 | -------------------------------------------------------------------------------- /config.ini: -------------------------------------------------------------------------------- 1 | [InterVar] 2 | buildver = hg19 3 | # hg19 4 | inputfile = example/ex1.avinput 5 | # the inputfile and the path example/ex1.avinput hg19_clinvar_20151201.avinput 6 | # tab-delimited will be better for including the other information 7 | inputfile_type = AVinput 8 | # the input file type VCF(vcf file with single sample),AVinput,VCF_m(vcf file with multiple samples) 9 | outfile = example/myanno 10 | # the output file location and prefix of output file 11 | database_intervar = intervardb 12 | # the database location/dir for Intervar 13 | lof_genes = %(database_intervar)s/PVS1.LOF.genes 14 | pm1_domain = %(database_intervar)s/PM1_domains_with_benigns 15 | mim2gene = %(database_intervar)s/mim2gene.txt 16 | # morbidmap = %(database_intervar)s/morbidmap.txt 17 | # disabled for BP5 as reviewer suggested. for OMIM, only mim2gene.txt needed. 18 | mim_recessive = %(database_intervar)s/mim_recessive.txt 19 | mim_domin = %(database_intervar)s/mim_domin.txt 20 | mim_adultonset = %(database_intervar)s/mim_adultonset.txt 21 | mim_pheno = %(database_intervar)s/mim_pheno.txt 22 | mim_orpha = %(database_intervar)s/mim_orpha.txt 23 | #orpha = %(database_intervar)s/orpha.txt 24 | orpha = %(database_intervar)s/orpha.txt.utf8 25 | knowngenecanonical = %(database_intervar)s/knownGeneCanonical.txt 26 | pp2_genes = %(database_intervar)s/PP2.genes 27 | bp1_genes = %(database_intervar)s/BP1.genes 28 | ps1_aa = %(database_intervar)s/PS1.AA.change.patho 29 | # do not add the builder version 30 | ps4_snps = %(database_intervar)s/PS4.variants 31 | # do not add the builder version 32 | bs2_snps = %(database_intervar)s/BS2_hom_het 33 | # do not add the builder version 34 | exclude_snps = %(database_intervar)s/ext.variants 35 | # do not add the builder version,the variant in this list will not check the frequency, it is causal. 36 | # the list should be tab-delimited,format like this: 37 | # Chr Pos Ref_allele Alt_allele 38 | evidence_file = None 39 | # add your own Evidence file for each Variant: 40 | # evidence file as tab-delimited,format like this: 41 | # Chr Pos Ref_allele Alt_allele PM1=1;BS2=1;PP2=0 42 | disorder_cutoff = 0.01 43 | #It is for BS1: Allele frequency is greater than expected for disorder 44 | [InterVar_Bool] 45 | onetranscript = FALSE 46 | # TRUE or FALSE: print out only one transcript for exonic variants (default: FALSE/all transcripts) 47 | otherinfo = TRUE 48 | # TRUE or FALSE: print out otherinfo (infomration in fifth column in queryfile,default: FALSE) 49 | # this option only perform well with AVinput file,and the other information only can be put in the fifth column. The information in >5th column will be lost. 50 | # When input as VCF or VCF_m files with otherinfo option, only het/hom will be kept, depth and qual will be lost. 51 | [Annovar] 52 | # the ANNOVAR version should be >= 2016-02-01, older verions of ANNOVAR will bring problems. 53 | convert2annovar = ./convert2annovar.pl 54 | #convert input file to annovar format 55 | table_annovar = ./table_annovar.pl 56 | # table_annovar.pl of file location 57 | annotate_variation = ./annotate_variation.pl 58 | # annotate_variation of file location 59 | database_locat = humandb 60 | # the database location/dir from annnovar check if database file exists 61 | #database_names = refGene esp6500siv2_all 1000g2015aug avsnp147 dbnsfp33a clinvar_20190305 gnomad_genome dbscsnv11 dbnsfp31a_interpro rmsk ensGene knownGene 62 | database_names = refGene esp6500siv2_all 1000g2015aug avsnp147 dbnsfp42a clinvar_20210501 gnomad_genome dbscsnv11 rmsk ensGene knownGene 63 | # specify the database_names from ANNOVAR or UCSC 64 | [Other] 65 | current_version = Intervar_20210727 66 | # pipeline version 67 | public_dev = https://github.com/WGLab/InterVar/releases 68 | -------------------------------------------------------------------------------- /docs/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WGLab/InterVar/4801682d37982bb3e99b50392790878a568b42cd/docs/favicon.ico -------------------------------------------------------------------------------- /docs/img/new.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WGLab/InterVar/4801682d37982bb3e99b50392790878a568b42cd/docs/img/new.png -------------------------------------------------------------------------------- /docs/index.md: -------------------------------------------------------------------------------- 1 | # InterVar 2 | 3 | InterVar is a bioinformatics software tool for clinical interpretation of genetic variants by the ACMG2015 guideline. The input to InterVar is an annotated file generated from ANNOVAR, while the output of InterVar is the classification of variants into 'benign', 'likely benign', 'VUS', 'likely pathogenic' and 'pathogenic', together with detailed evidence code. 4 | 5 | - **Automated interpretation**: The ACMG-AMP published in 2015 the updated standards and guidelines for the clinical interpretation of sequence variants with respect to human diseases, based on 28 criteria. The InterVar can generate automated interpretation on 18 criteria: (PVS1, PS1, PS4, PM1, PM2, PM4, PM5, PP2, PP3, PP5, BA1, BS1, BS2, BP1, BP3, BP4, BP6, BP7) 6 | 7 | - **Manual interpretation**: The rest of criteria (PS2, PS3, PM3, PM6, PP1, PP4, BS3, BS4, BP2, BP5) requires user input in the manual adjustment step. The user can provide these criteria in the evidence file. 8 | 9 | - **Flexible interpretation**: 1.Enable fine-tuned adjustment of the strength of the criteria,we add the option for upgrade/downgrade (strong, moderate and supporting) in each category of criteria. 2. Additional criteria are being added to the ACMG/AMP framework guideline. We suppose that,for each of criteria category as strong,moderate or supporting, it will have up to 10 additional user-provided or outside criteria. We named all these additional criteria as PS5,PM7,PP6,BS5,BP8. All the information of Flexible interpretation can be provided in the evidence file. 10 | 11 | # Pipeline 12 | 13 | Check [here](misc/whatsnew.md) to see what is new in InterVar. 14 | 15 | --- 16 | 17 | ![new](img/new.png) 2017Jan26: The InterVar paper is published online now [here](http://www.sciencedirect.com/science/article/pii/S0002929717300046). 18 | 19 | ![new](img/new.png) 2016Jan24: The web server of InterVar as wInterVar is online now [here](http://wintervar.wglab.org). 20 | 21 | ![new](img/new.png) 2015Nov16: The GitHub repository for InterVar is created. 22 | 23 | --- 24 | 25 | ## Reference 26 | 27 | - Li Q, Wang K. InterVar: Clinical Interpretation of Genetic Variants by the 2015 ACMG-AMP Guidelines. _American Journal of Human Genetics_, 2:267-280, 2017 28 | 29 | 30 | -------------------------------------------------------------------------------- /docs/misc/contributing.md: -------------------------------------------------------------------------------- 1 | ## Contributing custom interpretation pipeline 2 | 3 | If you would like to share an interpretation pipeline, please drop me an email at kai@openbioinformatics.org and we can discuss appropriate ways to host and share it to other users. 4 | 5 | ## Contributing to source codes and documentation 6 | 7 | Please fork the [GitHub repository](https://github.com/WGLab/InterVar), modify it, and submit a pull request to us. We will incorporate the change promptly after review. 8 | 9 | 10 | -------------------------------------------------------------------------------- /docs/misc/credit.md: -------------------------------------------------------------------------------- 1 | ## Acknowledgements 2 | 3 | The InterVar software was developed by Dr. Quan Li. Numerous users have provided valuable feedbak and suggestions to improve the functionality of InterVar and I am indebted to them for their invaluable help. 4 | 5 | 6 | ## Citations 7 | 8 | - Li Q, Wang K. [InterVar:Clinical interpretation of genetic variants by ACMG-AMP 2015 guideline.](http://dx.doi.org/10.1016/j.ajhg.2017.01.004) The American Journal of Human Genetics,Feb 2017 9 | 10 | -------------------------------------------------------------------------------- /docs/misc/faq.md: -------------------------------------------------------------------------------- 1 | 1. **How to report a bug or to ask a question?** 2 | 3 | The best way is: First, do read the website thoroughly especially FAQ. I received too many emails whose answers can easily be found in FAQ. Second, if you cannot find answer in FAQ or do not understand the answer well, then drop me an email as which should contain (1) command line argument (2) error message in screen or the LOG file (3) sometimes example inputfile (4) in case you use Mac or Windows, let me know. The reason is that I can fix something or diagnose something only if I can understand the question and reproduce the results. So do yourself a favor and do me a favor, include details in your email to avoid wasting our mutual time sending multiple emails. 4 | 5 | 2. **Can I use wInterVar in batch mode?** 6 | 7 | Unfortunately the wInterVar server only takes variants one by one. You will need to download InterVar and run the command line tools to analyze many variants, such as an entire exome. 8 | 9 | 3. **What is the difference between the pre-built InterVar scores in ANNOVAR versus using InterVar?** 10 | 11 | To facilitate people with quick-and-dirty analysis of variants, we pre-computed InterVar step 1 (automated interpretation) scores for ~80 million missense/nonsense variants (based on refGene definition) and provide this database through ANNOVAR. However, please note that these scores are only for missense/nonsense variants based on 18 criteria, also you cannot interpret indels by this database. Furthermore, the variant definitions were purely based on RefSeq and it may miss some genuine missense/nonsense variants not defined in that particular version of RefSeq. Finally, the results are generated using all default parameters in InterVar, and they may not suit the specific needs of a user. For these reasons, caution should be exercised when using these results. 12 | 4. **I get error of "IndexError: list index out of range"** 13 | 14 | Make sure all your datasets are updated such as OMIM(mim2gene and morbidmap), outdated file will bring these errors. 15 | 16 | 17 | -------------------------------------------------------------------------------- /docs/misc/whatsnew.md: -------------------------------------------------------------------------------- 1 | ![new](../img/new.png) 2015Nov16: The GitHub repository for InterVar is created. 2 | 3 | -------------------------------------------------------------------------------- /docs/user-guide/download.md: -------------------------------------------------------------------------------- 1 | ## InterVar main package 2 | 3 | The latest version of InterVar can be downloaded [here](https://github.com/WGLab/InterVar/releases). 4 | 5 | 6 | ## Web server of InterVar 7 | 8 | The web server(wInterVar) of InterVar can be visited at [here](https://wintervar.wglab.org). 9 | 10 | ## Third-party Program and datasets 11 | 12 | Several third-party researchers have provided additional annotation datasets that can be used by InterVar directly. However, users need to agree to specific license terms set forth by the third parties: 13 | 14 | 15 | * ANNOVAR main package : Please join the ANNOVAR mailing list at google groups [here](https://groups.google.com/forum/#!forum/annovar) to receive announcements on software updates. The latest version of ANNOVAR (2016Feb01) can be downloaded [here](http://www.openbioinformatics.org/annovar/annovar_download_form.php) (registration required). A patch to table_annovar.pl can be downloaded [here](http://www.openbioinformatics.org/annovar/download/table_annovar.pl) that fixed an error when `-separate` is used within `-arg` argument. ANNOVAR is written in Perl and can be run as a standalone application on diverse hardware systems where standard Perl modules are installed. 16 | 17 | * OMIM dataset: Please download the mim2gene.txt and morbidmap from OMIM at [here](http://www.omim.org/downloads),Please use the updated files from OMIM, outdated files will bring problems of InterVar. 18 | 19 | 20 | --- 21 | 22 | -------------------------------------------------------------------------------- /docs/user-guide/manual.md: -------------------------------------------------------------------------------- 1 | ## Warning: All the following steps are in the Linux system 2 | 3 | ## Download and unzip the main package 4 | 5 | Download the InterVar zip package at [here](https://github.com/WGLab/InterVar/archive/master.zip) using `wget https://github.com/WGLab/InterVar/archive/master.zip -O InterVar.zip`: 6 | 7 | ``` 8 | qli@sched1|:~> wget https://github.com/WGLab/InterVar/archive/master.zip -O InterVar.zip 9 | --2017-02-21 11:09:52-- https://github.com/WGLab/InterVar/archive/master.zip 10 | Resolving github.com... 192.30.253.112, 192.30.253.113 11 | Connecting to github.com|192.30.253.112|:443... connected. 12 | HTTP request sent, awaiting response... 302 Found 13 | Location: https://codeload.github.com/WGLab/InterVar/zip/master [following] 14 | --2017-02-21 11:09:52-- https://codeload.github.com/WGLab/InterVar/zip/master 15 | Resolving codeload.github.com... 192.30.253.121, 192.30.253.120 16 | Connecting to codeload.github.com|192.30.253.121|:443... connected. 17 | HTTP request sent, awaiting response... 200 OK 18 | Length: unspecified [application/zip] 19 | Saving to: "InterVar.zip" 20 | 21 | [ <=> ] 23,586,075 13.4M/s in 1.7s 22 | 23 | 2017-02-21 11:09:55 (13.4 MB/s) - "InterVar.zip" saved [23586075] 24 | ``` 25 | 26 | 27 | 28 | Assume that we have successfully downloaded the InterVar package as `InterVar.zip` and used `unzip InterVar.zip` to unpack the package. 29 | 30 | ``` 31 | qli@sched1|:~> unzip InterVar.zip 32 | Archive: InterVar.zip 33 | 7182a4e6e4d01349dd699d2aa55fa955028fc0b4 34 | creating: InterVar-master/ 35 | inflating: InterVar-master/.gitignore 36 | inflating: InterVar-master/Intervar.py 37 | inflating: InterVar-master/LICENSE 38 | inflating: InterVar-master/README.md 39 | inflating: InterVar-master/config.ini 40 | creating: InterVar-master/docs/ 41 | inflating: InterVar-master/docs/favicon.ico 42 | creating: InterVar-master/docs/img/ 43 | extracting: InterVar-master/docs/img/new.png 44 | inflating: InterVar-master/docs/index.md 45 | creating: InterVar-master/docs/misc/ 46 | inflating: InterVar-master/docs/misc/contributing.md 47 | inflating: InterVar-master/docs/misc/credit.md 48 | inflating: InterVar-master/docs/misc/faq.md 49 | extracting: InterVar-master/docs/misc/whatsnew.md 50 | creating: InterVar-master/docs/user-guide/ 51 | inflating: InterVar-master/docs/user-guide/download.md 52 | inflating: InterVar-master/docs/user-guide/manual.md 53 | inflating: InterVar-master/docs/user-guide/startup.md 54 | creating: InterVar-master/example/ 55 | inflating: InterVar-master/example/ex1.avinput 56 | inflating: InterVar-master/example/myanno.hg19_multianno.txt 57 | inflating: InterVar-master/example/myanno.hg19_multianno.txt.grl_p 58 | creating: InterVar-master/intervardb/ 59 | inflating: InterVar-master/intervardb/BP1.genes 60 | inflating: InterVar-master/intervardb/BS2_hom_het.hg19 61 | inflating: InterVar-master/intervardb/PM1_domains_with_benigns 62 | inflating: InterVar-master/intervardb/PP2.genes 63 | inflating: InterVar-master/intervardb/PS1.AA.change.patho 64 | inflating: InterVar-master/intervardb/PS1.AA.change.patho.hg19 65 | inflating: InterVar-master/intervardb/PS1.AA.change.patho.hg38 66 | inflating: InterVar-master/intervardb/PS4.variants.hg19 67 | inflating: InterVar-master/intervardb/PS4.variants.hg38 68 | inflating: InterVar-master/intervardb/PVS1.LOF.genes 69 | inflating: InterVar-master/intervardb/ext.variants.hg19 70 | inflating: InterVar-master/intervardb/knownGeneCanonical.txt 71 | inflating: InterVar-master/intervardb/mim_adultonset.txt 72 | inflating: InterVar-master/intervardb/mim_domin.txt 73 | inflating: InterVar-master/intervardb/mim_orpha.txt 74 | inflating: InterVar-master/intervardb/mim_pheno.txt 75 | inflating: InterVar-master/intervardb/mim_recessive.txt 76 | inflating: InterVar-master/intervardb/orpha.txt 77 | inflating: InterVar-master/mkdocs.yml 78 | ``` 79 | Go to the folder `InterVar-master` and check the files using `ls -alrt .` 80 | 81 | ``` 82 | qli@sched1|:~> cd InterVar-master/ 83 | qli@sched1|:~/InterVar-master> ls -alrt . 84 | total 128 85 | -rw-r----- 1 qli qli 5613 Feb 17 22:40 README.md 86 | -rw-r----- 1 qli qli 752 Feb 17 22:40 mkdocs.yml 87 | -rw-r----- 1 qli qli 1085 Feb 17 22:40 LICENSE 88 | -rw-r----- 1 qli qli 80051 Feb 17 22:40 Intervar.py 89 | drwxr-x--- 2 qli qli 4096 Feb 17 22:40 intervardb 90 | -rw-r----- 1 qli qli 702 Feb 17 22:40 .gitignore 91 | drwxr-x--- 2 qli qli 4096 Feb 17 22:40 example 92 | drwxr-x--- 5 qli qli 4096 Feb 17 22:40 docs 93 | -rw-r----- 1 qli qli 3089 Feb 17 22:40 config.ini 94 | drwxr-x--- 5 qli qli 4096 Feb 17 22:40 . 95 | drwx------ 33 qli qli 4096 Feb 21 11:13 .. 96 | 97 | ``` 98 | Now you can find the main python program as `Intervar.py`, and test the main program of InterVar can run properly or not by `python Intervar.py` : 99 | 100 | ``` 101 | qli@sched1|:~/InterVar-master> python Intervar.py 102 | Usage: Intervar.py [OPTION] -i INPUT -o OUTPUT ... 103 | Intervar.py --config=config.ini ... 104 | 105 | 106 | ============================================================================= 107 | InterVar 108 | Interpretation of Pathogenic/Benign for variants using python scripts of 109 | InterVar. 110 | ============================================================================= 111 | 112 | Options: 113 | --version show program's version number and exit 114 | -h, --help show this help message and exit 115 | -c config.ini, --config=config.ini 116 | The config file of all options. it is for your own 117 | configure file.You can edit all the options in the 118 | configure and if you use this options,you can ignore 119 | all the other options bellow 120 | -b hg19, --buildver=hg19 121 | The genomic build version, it can be hg19 and will 122 | support GRCh37 hg18 GRCh38 later 123 | -i example/ex1.avinput, --input=example/ex1.avinput 124 | The input file contains your variants 125 | --input_type=AVinput The input file type, it can be AVinput(Annovar's 126 | format),VCF(VCF with single sample),VCF_m(VCF with 127 | multiple samples) 128 | -o example/myanno, --output=example/myanno 129 | The prefix of output file which contains the results, 130 | the file of results will be as [$$prefix].intervar 131 | 132 | InterVar Other Options: 133 | -t intervardb, --database_intervar=intervardb 134 | The database location/dir for the InterVar dataset 135 | files 136 | -s your_evidence_file, --evidence_file=your_evidence_file 137 | User specified Evidence file for each variant 138 | 139 | How to add your own Evidence for each Variant: 140 | Prepare your own evidence file as tab-delimited,the line format: 141 | (The code for additional evidence should be as: PS5/PM7/PP6/BS5/BP8 ; 142 | The format for upgrad/downgrade of criteria should be like: 143 | grade_PS1=2; 1 for Strong; 2 for Moderate; 3 for Supporting) 144 | Chr Pos Ref_allele Alt_allele PM1=1;BS2=1;BP3=0;PS5=1;grade_PM1=1 145 | 146 | Annovar Options: 147 | Caution: check these options from manual of Annovar. 148 | 149 | --table_annovar=./table_annovar.pl 150 | The Annovar perl script of table_annovar.pl 151 | --convert2annovar=./convert2annovar.pl 152 | The Annovar perl script of convert2annovar.pl 153 | --annotate_variation=./annotate_variation.pl 154 | The Annovar perl script of annotate_variation.pl 155 | -d humandb, --database_locat=humandb 156 | The database location/dir for the annotation datasets 157 | 158 | Examples: 159 | ./InterVar.py -c config.ini # Run the examples in config.ini 160 | ./InterVar.py -b hg19 -i your_input --input_type=VCF -o your_output 161 | 162 | ``` 163 | The `Intervar.py` can run when python version > 2.6 . 164 | If you see above screen output after `python Intervar.py` , that mean the InterVar can run on your system without problem. 165 | Otherwise, please check your python version using `env python --version` 166 | 167 | Next we need to download the ANNOVAR and OMIM dataset. 168 | 169 | ## Download Third-party Program and datasets 170 | 171 | Several third-party researchers have provided additional annotation program and datasets that can be used by InterVar directly. However, users need to agree to specific license terms set forth by the third parties: 172 | 173 | 174 | * ANNOVAR main package : The latest version of ANNOVAR (2016Feb01) can be downloaded [here](http://www.openbioinformatics.org/annovar/annovar_download_form.php) (registration required). ANNOVAR is written in Perl and can be run as a standalone application on diverse hardware systems where standard Perl modules are installed. 175 | 176 | * OMIM dataset: Please download the mim2gene.txt from OMIM at [here](http://www.omim.org/downloads),Please use the updated files from OMIM, outdated files will bring problems of InterVar. 177 | 178 | 179 | Now,assume that we have downloaded ANNOVAR package and used `tar xvfz annovar.latest.tar.gz` to unpack the package. You will see that the `bin/` directory contains several Perl programs with .pl suffix. 180 | 181 | Also download the mim2gene.txt by using `wget https://www.omim.org/static/omim/data/mim2gene.txt -O mim2gene.txt`. 182 | 183 | ``` 184 | qli@sched1|:~/InterVar-master> wget https://www.omim.org/static/omim/data/mim2gene.txt -O mim2gene.txt 185 | --2017-02-21 11:47:05-- https://www.omim.org/static/omim/data/mim2gene.txt 186 | Resolving www.omim.org... 54.84.223.11 187 | Connecting to www.omim.org|54.84.223.11|:443... connected. 188 | HTTP request sent, awaiting response... 200 OK 189 | Length: 1090455 (1.0M) [text/plain] 190 | Saving to: "mim2gene.txt" 191 | 192 | 100%[=============================================================================================>] 1,090,455 2.31M/s in 0.4s 193 | 194 | 2017-02-21 11:47:06 (2.31 MB/s) - "mim2gene.txt" saved [1090455/1090455] 195 | ``` 196 | 197 | Then please copy three ANNOVAR perl files: `annotate_variation.pl` `table_annovar.pl` `convert2annovar.pl` to InterVar's folder of `InterVar-master`. 198 | 199 | Also please copy the `mim2gene.txt` to intervardb folder of `InterVar-master/intervardb` 200 | 201 | ``` 202 | qli@sched1|:~/tools/annovar> cp -f annotate_variation.pl table_annovar.pl convert2annovar.pl ~/InterVar-master/ 203 | 204 | qli@sched1|:~/InterVar-master> cp -f mim2gene.txt ~/InterVar-master/intervardb/ 205 | 206 | ``` 207 | 208 | Please go to InterVar's install folder of `InterVar-master`,check and edit the config.ini using `vim config.ini`, please check these lines in the config.ini . The names and locations in config.ini should match with your downloaded files: 209 | 210 | `mim2gene = %(database_intervar)s/mim2gene.txt` 211 | This line is for location of the OMIM's mim2gene file 212 | 213 | `convert2annovar = ./convert2annovar.pl` 214 | This line is for location of ANNOVAR's `convert2annovar.pl` file 215 | 216 | `table_annovar = ./table_annovar.pl` 217 | This line is for location of ANNOVAR's `table_annovar.pl` file 218 | 219 | `annotate_variation = ./annotate_variation.pl` 220 | This line is for location of ANNOVAR's `table_annovar.pl` file 221 | 222 | 223 | ``` 224 | [InterVar] 225 | buildver = hg19 226 | # hg19 227 | inputfile = example/ex1.avinput 228 | # the inputfile and the path example/ex1.avinput hg19_clinvar_20151201.avinput 229 | # tab-delimited will be better for including the other information 230 | inputfile_type = AVinput 231 | # the input file type VCF(vcf file with single sample),AVinput,VCF_m(vcf file with multiple samples) 232 | outfile = example/myanno 233 | # the output file location and prefix of output file 234 | database_intervar = intervardb 235 | # the database location/dir for Intervar 236 | lof_genes = %(database_intervar)s/PVS1.LOF.genes 237 | pm1_domain = %(database_intervar)s/PM1_domains_with_benigns 238 | mim2gene = %(database_intervar)s/mim2gene.txt 239 | #morbidmap = %(database_intervar)s/morbidmap.txt 240 | mim_recessive = %(database_intervar)s/mim_recessive.txt 241 | mim_domin = %(database_intervar)s/mim_domin.txt 242 | mim_adultonset = %(database_intervar)s/mim_adultonset.txt 243 | mim_pheno = %(database_intervar)s/mim_pheno.txt 244 | mim_orpha = %(database_intervar)s/mim_orpha.txt 245 | orpha = %(database_intervar)s/orpha.txt 246 | knowngenecanonical = %(database_intervar)s/knownGeneCanonical.txt 247 | pp2_genes = %(database_intervar)s/PP2.genes 248 | bp1_genes = %(database_intervar)s/BP1.genes 249 | ps1_aa = %(database_intervar)s/PS1.AA.change.patho 250 | # do not add the builder version 251 | ps4_snps = %(database_intervar)s/PS4.variants 252 | # do not add the builder version 253 | bs2_snps = %(database_intervar)s/BS2_hom_het 254 | # do not add the builder version 255 | exclude_snps = %(database_intervar)s/ext.variants 256 | # do not add the builder version,the variant in this list will not check the frequency, it is causal. 257 | # the list should be tab-delimited,format like this: 258 | # Chr Pos Ref_allele Alt_allele 259 | evidence_file = None 260 | # add your own Evidence file for each Variant: 261 | # evidence file as tab-delimited,format like this: 262 | # Chr Pos Ref_allele Alt_allele PM1=1;BS2=1;PP2=0 263 | disorder_cutoff = 0.01 264 | #It is for BS1: Allele frequency is greater than expected for disorder 265 | [InterVar_Bool] 266 | onetranscript = FALSE 267 | # TRUE or FALSE: print out only one transcript for exonic variants (default: FALSE/all transcripts) 268 | otherinfo = FALSE 269 | # TRUE or FALSE: print out otherinfo (infomration in fifth column in queryfile,default: FALSE) 270 | # this option only perform well with AVinput file,and the other information only can be put in the fifth column. The information in >5th column will be lost. 271 | # When input as VCF or VCF_m files with otherinfo option, only het/hom will be kept, depth and qual will be lost. 272 | [Annovar] 273 | convert2annovar = ./convert2annovar.pl 274 | #convert input file to annovar format 275 | table_annovar = ./table_annovar.pl 276 | # table_annovar.pl of file location 277 | annotate_variation = ./annotate_variation.pl 278 | # annotate_variation of file location 279 | database_locat = humandb 280 | # the database location/dir from annnovar check if database file exists 281 | database_names = refGene esp6500siv2_all 1000g2015aug avsnp144 dbnsfp30a clinvar_20160302 exac03 dbscsnv11 dbnsfp31a_interpro rmsk ensGene knownGene 282 | # specify the database_names from ANNOVAR or UCSC 283 | [Other] 284 | current_version = Intervar_20170217 285 | # pipeline version 286 | public_dev = https://github.com/WGLab/InterVar/releases 287 | ``` 288 | 289 | 290 | ## Prepare your input files: 291 | The format of input file can be VCF or AVinput as ANNOVAR input,actually the input file only need information of Chr,Position start,Position end, Reference_allele,Alternative_allele. 292 | ``` 293 | qli@sched1|:~/work/InterVar/InterVar> head -4 example/ex1.avinput 294 | 1 948921 948921 T C comments: rs15842, a SNP in 5' UTR of ISG15 295 | 1 984971 984971 G A comments: rs111818381 296 | 1 984971 984971 G C comments: rs111818381 297 | 1 1404001 1404001 G T comments: rs149123833, a SNP in 3' UTR of ATAD3C 298 | ``` 299 | 300 | The input file type can be specified by option of `--input_type`, there are three types: AVinput(Annovar's format),VCF(VCF with single sample),VCF_m(VCF with multiple samples) 301 | 302 | ## Run the Annotation on the file `example/ex1.avinput`. 303 | Please be advice that for the first running, the InterVar will use the `perl ./annotate_variation.pl` to download the necessary ANNOVAR datasests,it will take some time.(If you also were ANNOVAR user before, you can specify the ANNOVAR's database_location by option `--database_locat`, you also can edit the config.ini, find the line `database_locat = humandb` and replace with your location , InterVar will check if all database file exist in you provided location).From second running , InterVar will not download the same ANNOVAR's datasets again. 304 | 305 | ``` 306 | qli@sched1|:~/InterVar-master> python Intervar.py -i example/ex1.avinput -o example/myanno 307 | ============================================================================= 308 | InterVar 309 | Interpretation of Pathogenic/Benign for variants using python scripts of InterVar. 310 | ============================================================================= 311 | 312 | %prog 0.1.5 313 | Written by Quan LI,leequan@gmail.com. 314 | InterVar is free for non-commercial use without warranty. 315 | Please contact the authors for commercial use. 316 | Copyright (C) 2016 Wang Genomic Lab 317 | ============================================================================ 318 | 319 | Notice: Your command of InterVar is ['Intervar.py', '-i', 'example/ex1.avinput', '-o', 'example/myanno'] 320 | INFO: The options are {'pp2_genes': 'intervardb/PP2.genes', 'inputfile': 'example/ex1.avinput', 'exclude_snps': 'intervardb/ext.variants.hg19', 'annotate_variation': './annotate_variation.pl', 'ps4_snps': 'intervardb/PS4.variants.hg19', 'mim_recessive': 'intervardb/mim_recessive.txt', 'current_version': 'Intervar_20170217', 'bs2_snps': 'intervardb/BS2_hom_het.hg19', 'evidence_file': 'None', 'public_dev': 'https://github.com/WGLab/InterVar/releases', 'otherinfo': 'FALSE', 'database_names': 'refGene esp6500siv2_all 1000g2015aug avsnp144 dbnsfp30a clinvar_20160302 exac03 dbscsnv11 dbnsfp31a_interpro rmsk ensGene knownGene', 'mim_pheno': 'intervardb/mim_pheno.txt', 'table_annovar': './table_annovar.pl', 'buildver': 'hg19', 'inputfile_type': 'AVinput', 'onetranscript': 'FALSE', 'mim2gene': 'intervardb/mim2gene.txt', 'orpha': 'intervardb/orpha.txt', 'ps1_aa': 'intervardb/PS1.AA.change.patho.hg19', 'mim_adultonset': 'intervardb/mim_adultonset.txt', 'morbidmap': 'intervardb/morbidmap.txt', 'outfile': 'example/myanno', 'knowngenecanonical': 'intervardb/knownGeneCanonical.txt', 'convert2annovar': './convert2annovar.pl', 'database_locat': 'humandb', 'database_intervar': 'intervardb', 'lof_genes': 'intervardb/PVS1.LOF.genes', 'disorder_cutoff': '0.01', 'mim_domin': 'intervardb/mim_domin.txt', 'pm1_domain': 'intervardb/PM1_domains_with_benigns', 'mim_orpha': 'intervardb/mim_orpha.txt', 'bp1_genes': 'intervardb/BP1.genes'} 321 | Notice: the folder of humandb is created! 322 | Warning: The Annovar dataset file of refGene is not in humandb,begin to download this humandb/hg19_refGene.txt ... 323 | perl ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar refGene humandb 324 | NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done 325 | NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_refGene.txt.gz ... OK 326 | NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_refGeneMrna.fa.gz ... OK 327 | NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_refGeneVersion.txt.gz ... OK 328 | NOTICE: Uncompressing downloaded files 329 | NOTICE: Finished downloading annotation files for hg19 build version, with files saved at the 'humandb' directory 330 | Warning: The Annovar dataset file of esp6500siv2_all is not in humandb,begin to download this humandb/hg19_esp6500siv2_all.txt ... 331 | perl ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar esp6500siv2_all humandb 332 | ...... 333 | ...... 334 | ...... 335 | perl ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar ensGene humandb 336 | NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done 337 | NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_ensGene.txt.gz ... OK 338 | NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_ensGeneMrna.fa.gz ... OK 339 | NOTICE: Uncompressing downloaded files 340 | NOTICE: Finished downloading annotation files for hg19 build version, with files saved at the 'humandb' directory 341 | Warning: The Annovar dataset file of knownGene is not in humandb,begin to download this humandb/hg19_knownGene.txt ... 342 | perl ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar knownGene humandb 343 | NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done 344 | NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_knownGene.txt.gz ... OK 345 | NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_kgXref.txt.gz ... OK 346 | NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_knownGeneMrna.fa.gz ... OK 347 | NOTICE: Uncompressing downloaded files 348 | NOTICE: Finished downloading annotation files for hg19 build version, with files saved at the 'humandb' directory 349 | perl ./table_annovar.pl example/ex1.avinput humandb -buildver hg19 -remove -out example/myanno -protocol refGene,esp6500siv2_all,1000g2015aug_all,avsnp144,dbnsfp30a,clinvar_20160302,exac03,dbscsnv11,dbnsfp31a_interpro,rmsk,ensGene,knownGene -operation g,f,f,f,f,f,f,f,f,r,g,g -nastring . 350 | ----------------------------------------------------------------- 351 | ``` 352 | After download all the ANNOVAR datasets, then begin to annotate the variants: 353 | ``` 354 | 355 | NOTICE: Processing operation=g protocol=refGene 356 | 357 | NOTICE: Running with system command 358 | NOTICE: Output files were written to example/myanno.refGene.variant_function, example/myanno.refGene.exonic_variant_function 359 | NOTICE: Reading gene annotation from humandb/hg19_refGene.txt ... Done with 52068 transcripts (including 11837 without coding sequence annotation) for 26464 unique genes 360 | NOTICE: Processing next batch with 18 unique variants in 18 input lines 361 | NOTICE: Reading FASTA sequences from humandb/hg19_refGeneMrna.fa ... Done with 17 sequences 362 | WARNING: A total of 356 sequences will be ignored due to lack of correct ORF annotation 363 | ----------------------------------------------------------------- 364 | NOTICE: Processing operation=f protocol=esp6500siv2_all 365 | 366 | NOTICE: Running system command 367 | NOTICE: the --dbtype esp6500siv2_all is assumed to be in generic ANNOVAR database format 368 | NOTICE: Variants matching filtering criteria are written to example/myanno.hg19_esp6500siv2_all_dropped, other variants are written to example/myanno.hg19_esp6500siv2_all_filtered 369 | NOTICE: Processing next batch with 18 unique variants in 18 input lines 370 | NOTICE: Database index loaded. Total number of bins is 594771 and the number of bins to be scanned is 12 371 | NOTICE: Scanning filter database humandb/hg19_esp6500siv2_all.txt...Done 372 | ...... 373 | ...... 374 | ...... 375 | 376 | NOTICE: Processing operation=g protocol=knownGene 377 | 378 | NOTICE: Running with system command 379 | NOTICE: Output files were written to example/myanno.knownGene.variant_function, example/myanno.knownGene.exonic_variant_function 380 | NOTICE: Reading gene annotation from humandb/hg19_knownGene.txt ... Done with 78963 transcripts (including 18502 without coding sequence annotation) for 28495 unique genes 381 | NOTICE: Processing next batch with 18 unique variants in 18 input lines 382 | NOTICE: Reading FASTA sequences from humandb/hg19_knownGeneMrna.fa ... Done with 47 sequences 383 | WARNING: A total of 43 sequences will be ignored due to lack of correct ORF annotation 384 | ----------------------------------------------------------------- 385 | NOTICE: Multianno output file is written to example/myanno.hg19_multianno.txt 386 | 387 | Notice: Begin the variants interpretation by InterVar 388 | Notice: About 18 lines in your variant file! 389 | Notice: About 22 variants has been processed by InterVar 390 | Notice: The InterVar is finished, the output file is [ example/myanno.hg19_multianno.txt.intervar ] 391 | ============================================================================= 392 | Thanks for using InterVar! 393 | Report bugs to leequan@gmail.com; 394 | InterVar homepage: 395 | ============================================================================= 396 | 397 | 398 | ``` 399 | Then you can check the result file `example/myanno.hg19_multianno.txt.intervar`. 400 | 401 | ``` 402 | qli@sched1|:~/InterVar-master> head -3 example/myanno.hg19_multianno.txt.intervar 403 | #Chr Start End Ref Alt Ref.Gene Func.refGene ExonicFunc.refGene Gene.ensGene avsnp144 AAChange.ensGene AAChange.refGene clinvar: Clinvar InterVar: InterVar and Evidence Freq_ExAC_ALL Freq_esp6500siv2_all Freq_1000g2015aug_all CADD_raw CADD_phred SIFT_score GERP++_RS phyloP46way_placental dbscSNV_ADA_SCORE dbscSNV_RF_SCORE Interpro_domain AAChange.knownGene rmsk MetaSVM_score Freq_ExAC_POPs OMIM Phenotype_MIM OrphaNumber Orpha 404 | 1 948921 948921 T C ISG15 UTR5 . ENSG00000187608 rs15842 . . clinvar: UNK InterVar: Benign PVS1=0 PS=[0, 0, 0, 0, 0] PM=[0, 0, 0, 0, 0, 0, 0] PP=[0, 0, 0, 0, 0, 0] BA1=1 BS=[1, 0, 0, 0, 0] BP=[0, 0, 0, 0, 0, 0, 0, 0] 0.9416 0.8858 0.903155 . . . . . . . . . . . AFR:0.7386,AMR:0.9632,EAS:0.9998,FIN:0.9681,NFE:0.9543,OTH:0.9410,SAS:0.9617 147571 616126; 319563; 319563|MSMD due to complete ISG15 deficiency|<1 / 1 000 000|Autosomal recessive|Childhood|616126 ~ 405 | 1 984971 984971 G A AGRN exonic nonsynonymous SNV ENSG00000188157 rs111818381 ENSG00000188157:ENST00000379370:exon26:c.G4540A:p.A1514T AGRN:NM_198576:exon26:c.G4540A:p.A1514T clinvar: Likely benign InterVar: Likely benign PVS1=0 PS=[0, 0, 0, 0, 0] PM=[0, 0, 0, 0, 0, 0, 0] PP=[0, 0, 0, 0, 0, 0] BA1=0 BS=[1, 0, 0, 0, 0] BP=[0, 0, 0, 1, 0, 1, 0, 0] 0.01270.0079 0.00439297 -0.923 0.023 0.594 -1.43 . . . Concanavalin A-like lectin/glucanase domain;Laminin G domain AGRN:uc001ack.2:exon26:c.G4540A:p.A1514T . -1.041 AFR:0.0034,AMR:0.0160,EAS:0,FIN:0.0162,NFE:0.0191,OTH:0.0174,SAS:0.0033 103320 615120; 590;98913;98914; 590|CMS|1-9 / 1 000 000|Autosomal dominant
or Autosomal recessive|Infancy
Neonatal|254190 254210 254300 601462 603034 605809 608930 608931 610542 614198 614750 615120 616040 616227 616228 616304 616313 616314 616321 616322 616323 616324 616325 616326 616330 616720 617143 ~98913|-|-|-|-|254300 601462 605809 608930 608931 614198 615120 616304 616313 616314 616321 616322 616323 616324 616325 616326 616720 ~98914|-|-|Autosomal dominant
or Autosomal recessive|-|254210 615120 616040 616330 616720 617143 ~ 406 | 407 | ``` 408 | The result is tab-delimited,you can import this file into Excel. The colunm of "InterVar: InterVar and Evidence" give the InterVar interpretation result with all the criteria. 409 | 410 | 411 | 412 | ## Advanced usage: 413 | 414 | * How to add your own evidence 415 | 416 | In this section, I will give the example of how to add the user's own evidence for the variants. 417 | 418 | For one variant in the example: 419 | 420 | `1 67705958 67705958 G A IL23R exonic nonsynonymous SNV` 421 | 422 | Firstly, we need to check the automated interpretation information in the `example/myanno.hg19_multianno.txt.intervar ` by `grep "67705958" example/myanno.hg19_multianno.txt.intervar | awk -F '\t' '{OFS=FS;print $1,$2,$3,$4,$5,$6,$7,$8,$14}'` 423 | 424 | ``` 425 | qli@sched1|:~/InterVar-master> grep "67705958" example/myanno.hg19_multianno.txt.intervar | awk -F '\t' '{OFS=FS;print $1,$2,$3,$4,$5,$6,$7,$8,$14}' 426 | 1 67705958 67705958 G A IL23R exonic nonsynonymous SNV InterVar: Uncertain significance PVS1=0 PS=[0, 0, 0, 0, 0] PM=[0, 0, 0, 0, 0, 0, 0] PP=[0, 0, 0, 0, 0, 0] BA1=0 BS=[1, 0, 0, 0, 0] BP=[0, 0, 0, 0, 0, 0, 0, 0] 427 | 428 | ``` 429 | 430 | This variant is annotated by InterVar as `Uncertain significance`, and the criteria is 431 | 432 | `PVS1=0 PS=[0, 0, 0, 0, 0] PM=[0, 0, 0, 0, 0, 0, 0] PP=[0, 0, 0, 0, 0, 0] BA1=0 BS=[1, 0, 0, 0, 0] BP=[0, 0, 0, 0, 0, 0, 0, 0]` 433 | 434 | Only BS1=1, all other criterai is 0; 435 | 436 | We want to add two criteria as PS3=1 for "Well-established in vitro or in vivo functional studies supportive of a damaging effect " and PM6=1 for "Assumed de novo, but without confirmation of paternity and maternity". 437 | 438 | Please vim a tab-delimited text file with name as "evdience.txt". The format should be like: 439 | 440 | Chr Position Ref_allele Alt_allele evidence_list 441 | 442 | (If you want to add more than one criteria ,it should be semicolon-delimited in the evidence_list column.) 443 | 444 | it will like this: 445 | 446 | ``` 447 | qli@sched1|:~/InterVar-master> cat evdience.txt 448 | 1 67705958 G A PS3=1;PM6=1 449 | 450 | ``` 451 | Re-run the annotation and add the option of --evidence_file by `python Intervar.py -i example/ex1.avinput -o example/myanno --evidence_file=evdience.txt` 452 | 453 | ``` 454 | qli@sched1|:~/InterVar-master> python Intervar.py -i example/ex1.avinput -o example/myanno --evidence_file=evdience.txt ============================================================================= 455 | InterVar 456 | Interpretation of Pathogenic/Benign for variants using python scripts of InterVar. 457 | ============================================================================= 458 | 459 | %prog 0.1.5 460 | Written by Quan LI,leequan@gmail.com. 461 | InterVar is free for non-commercial use without warranty. 462 | Please contact the authors for commercial use. 463 | Copyright (C) 2016 Wang Genomic Lab 464 | ============================================================================ 465 | 466 | Notice: Your command of InterVar is ['Intervar.py', '-i', 'example/ex1.avinput', '-o', 'example/myanno', '--evidence_file=evdience.txt'] 467 | Warning: You provided your own evidence file [ evdience.txt ] for the InterVar. 468 | INFO: The options are {'pp2_genes': 'intervardb/PP2.genes', 'inputfile': 'example/ex1.avinput', 'exclude_snps': 'intervardb/ext.variants.hg19', 'annotate_variation': './annotate_variation.pl', 'ps4_snps': 'intervardb/PS4.variants.hg19', 'mim_domin': 'intervardb/mim_domin.txt', 'current_version': 'Intervar_20170217', 'bs2_snps': 'intervardb/BS2_hom_het.hg19', 'evidence_file': 'evdience.txt', 'public_dev': 'https://github.com/WGLab/InterVar/releases', 'otherinfo': 'FALSE', 'database_names': 'refGene esp6500siv2_all 1000g2015aug avsnp144 dbnsfp30a clinvar_20160302 exac03 dbscsnv11 dbnsfp31a_interpro rmsk ensGene knownGene', 'mim_pheno': 'intervardb/mim_pheno.txt', 'table_annovar': './table_annovar.pl', 'buildver': 'hg19', 'inputfile_type': 'AVinput', 'onetranscript': 'FALSE', 'mim2gene': 'intervardb/mim2gene.txt', 'orpha': 'intervardb/orpha.txt', 'ps1_aa': 'intervardb/PS1.AA.change.patho.hg19', 'mim_adultonset': 'intervardb/mim_adultonset.txt', 'knowngenecanonical': 'intervardb/knownGeneCanonical.txt', 'outfile': 'example/myanno', 'convert2annovar': './convert2annovar.pl', 'database_locat': 'humandb', 'database_intervar': 'intervardb', 'lof_genes': 'intervardb/PVS1.LOF.genes', 'disorder_cutoff': '0.01', 'mim_recessive': 'intervardb/mim_recessive.txt', 'pm1_domain': 'intervardb/PM1_domains_with_benigns', 'mim_orpha': 'intervardb/mim_orpha.txt', 'bp1_genes': 'intervardb/BP1.genes'} 469 | Warning: the folder of humandb is already created! 470 | Notice: Begin the variants interpretation by InterVar 471 | Notice: About 18 lines in your variant file! 472 | Notice: About 22 variants has been processed by InterVar 473 | Notice: The InterVar is finished, the output file is [ example/myanno.hg19_multianno.txt.intervar ] 474 | ============================================================================= 475 | Thanks for using InterVar! 476 | Report bugs to leequan@gmail.com; 477 | InterVar homepage: 478 | ============================================================================= 479 | 480 | ``` 481 | 482 | Then we check the new result of `example/myanno.hg19_multianno.txt.intervar`, by `grep "67705958" example/myanno.hg19_multianno.txt.intervar | awk -F '\t' '{OFS=FS;print $1,$2,$3,$4,$5,$6,$7,$8,$14}'` 483 | 484 | ``` 485 | qli@sched1|:~/InterVar-master> grep "67705958" example/myanno.hg19_multianno.txt.intervar | awk -F '\t' '{OFS=FS;print $1,$2,$3,$4,$5,$6,$7,$8,$14}' 486 | 1 67705958 67705958 G A IL23R exonic nonsynonymous SNV InterVar: Likely pathogenic PVS1=0 PS=[0, 0, 1, 0, 0] PM=[0, 0, 0, 0, 0, 1, 0] PP=[0, 0, 0, 0, 0, 0] BA1=0 BS=[1, 0, 0, 0, 0] BP=[0, 0, 0, 0, 0, 0, 0, 0] 487 | 488 | ``` 489 | 490 | The annotation results change to `Likely pathogenic`, and also you can find that PS3 change to 1 and PM6 change to 1; 491 | 492 | So, one strong pathogenic criteria(PS3) and one moderate pathogenic criteria(PM6) will make the clinical interpretation as `Likely pathogenic`. 493 | 494 | 495 | 496 | 497 | 498 | * How to change the strength of criteria 499 | 500 | In this section, I will give the example of how to change the strength of criteria. 501 | 502 | we will use the same variant as before: 503 | 504 | `1 67705958 67705958 G A IL23R exonic nonsynonymous SNV` 505 | 506 | we already add more evidence `PS3=1;PM6=1`, and we also want to increase the PM6 from moderate to strong: 507 | 508 | The format for upgrad/downgrade of criteria should be like: 509 | 510 | `grade_PXX=2;grade_BXX=3` `1 for Strong; 2 for Moderate; 3 for Supporting` 511 | 512 | so we need add a `grade_PM6=1`, then the finally user own evidence file of evdience.txt will like this: 513 | 514 | ``` 515 | qli@sched1|:~/InterVar-master> cat evdience.txt 516 | 1 67705958 G A PS3=1;PM6=1;grade_PM6=1; 517 | 518 | ``` 519 | 520 | Then we re-interpret the variants: 521 | 522 | ``` 523 | qli@sched1|:~/InterVar-master> python Intervar.py -i example/ex1.avinput -o example/myanno --evidence_file=evdience.txt 524 | ...... 525 | ...... 526 | Notice: About 18 lines in your variant file! 527 | Notice: About 22 variants has been processed by InterVar 528 | Notice: The InterVar is finished, the output file is [ example/myanno.hg19_multianno.txt.intervar ] 529 | ============================================================================= 530 | Thanks for using InterVar! 531 | Report bugs to leequan@gmail.com; 532 | InterVar homepage: 533 | ============================================================================= 534 | 535 | ``` 536 | 537 | Check the new result of `example/myanno.hg19_multianno.txt.intervar`, by `grep "67705958" example/myanno.hg19_multianno.txt.intervar | awk -F '\t' '{OFS=FS;print $1,$2,$3,$4,$5,$6,$7,$8,$14}'` 538 | 539 | ``` 540 | qli@sched1|:~/InterVar-master> grep "67705958" example/myanno.hg19_multianno.txt.intervar | awk -F '\t' '{OFS=FS;print $1,$2,$3,$4,$5,$6,$7,$8,$14}' 541 | 1 67705958 67705958 G A IL23R exonic nonsynonymous SNV InterVar: Pathogenic PVS1=0 PS=[0, 0, 1, 0, 0] PM=[0, 0, 0, 0, 0, 1, 0] PP=[0, 0, 0, 0, 0, 0] BA1=0 BS=[1, 0, 0, 0, 0] BP=[0, 0, 0, 0, 0, 0, 0, 0] 542 | 543 | ``` 544 | You can find that now the interpretation changed as `Pathogenic`. Two strong pathogenic criteria will make clinical significance to `pathogenic`. 545 | 546 | 547 | 548 | 549 | * 550 | 551 | ## Tips: 552 | There are some tips for quickly running InterVar. 553 | 554 | 555 | 556 | ## Following is the full synopsis and options of InterVar 557 | 558 | Intervar.py [options] 559 | 560 | ## OPTIONS 561 | 562 | - -h, --help 563 | show this help message and exit 564 | 565 | - --version 566 | show program''s version number and exit 567 | 568 | - --config=config.ini 569 | Load your config file. The config file contains all options. 570 | 571 | if you use this options,you can ignore all the other options bellow. 572 | 573 | - -i INPUTFILE, --input=INPUTFILE 574 | input file of variants for analysis 575 | 576 | - --input_type=AVinput 577 | The input file type, it can be AVinput(Annovar''sformat),VCF(VCF with single sample),VCF_m(VCF with multiple samples) 578 | 579 | - -o OUTPUTFILE, --output=OUTPUTFILE 580 | prefix the output file (default:output) 581 | 582 | - -b BUILDVER, --buildver=BUILDVER 583 | version of reference genome: hg19(default) 584 | 585 | - -t intervardb, --database_intervar=intervardb 586 | The database location/dir for the InterVar dataset files 587 | 588 | - -s your_evidence_file, --evidence_file=your_evidence_file 589 | 590 | This potion is for user specified evidence file for each variant, 591 | 592 | How to add your own Evidence for each Variant: 593 | 594 | Prepare your own evidence file as tab-delimited,the line format: 595 | 596 | (The code for additional evidence should be as: PS5/PM7/PP6/BS5/BP8 ; 597 | 598 | The format for upgrad/downgrade of criteria should be like: 599 | 600 | grade_PS1=2; 1 for Strong; 2 for Moderate; 3 for Supporting) 601 | 602 | Chr Pos Ref_allele Alt_allele evidence_list 603 | 604 | 1 123456 A G PM1=1;BS2=1;BP3=0;PS5=1;grade_PM1=1 605 | 606 | - --table_annovar=./table_annovar.pl 607 | The Annovar perl script of table_annovar.pl 608 | 609 | - --convert2annovar=./convert2annovar.pl 610 | The Annovar perl script of convert2annovar.pl 611 | 612 | - --annotate_variation=./annotate_variation.pl 613 | The Annovar perl script of annotate_variation.pl 614 | 615 | - -d humandb, --database_locat=humandb 616 | The database location/dir for the Annovar annotation datasets 617 | 618 | -------------------------------------------------------------------------------- /docs/user-guide/startup.md: -------------------------------------------------------------------------------- 1 | ## Quick guide to InterVar 2 | 3 | For beginners, the easiest way to use InterVar is to annotate a VCF file by ANNOVAR and generate a multianno file, then InterVar will use this file directly as input for clinical interpretation. 4 | 5 | 1. You need install Python. 6 | 2. You need install [ANNOVAR](http://annovar.openbioinformatics.org/en/latest/) 7 | 3. You need download [InterVar](https://github.com/WGLab/InterVar/archive/master.zip) or git clone using URL https://github.com/WGLab/InterVar.git 8 | 4. You need download other file such as mim2gene.txt from [OMIM](http://www.omim.org/downloads).Please use the updated files from OMIM, outdated files will bring problems of InterVar. 9 | 5. Downlad all necessary datasets from ANNOVAR( InterVar also will download automatically) 10 | 6. Prepare your input file, it can be VCF file or AVinput as ANNOVAR input,actually the input file only need information of Chr,Position start,Position end, Reference_allele,Alternative_allele 11 | 7. Run the InterVar! 12 | 13 | 14 | 15 | ## EXAMPLE 16 | 17 | ./InterVar.py -c config.ini # Run the examples in config.ini 18 | 19 | ./InterVar.py -b hg19 -i your_input --input_type=VCF -o your_output 20 | 21 | ## Additional resources 22 | 23 | A step-by-step protocol on using InterVar is available at the manual document. 24 | 25 | -------------------------------------------------------------------------------- /example/ex1.avinput: -------------------------------------------------------------------------------- 1 | 1 948921 948921 T C comments: rs15842, a SNP in 5' UTR of ISG15 2 | 1 984971 984971 G A comments: rs111818381 3 | 1 984971 984971 G C comments: rs111818381 4 | 1 1404001 1404001 G T comments: rs149123833, a SNP in 3' UTR of ATAD3C 5 | 1 5935162 5935162 A T comments: rs1287637, a splice site variant in NPHP4 6 | 1 162736463 162736463 C T comments: rs1000050, a SNP in Illumina SNP arrays 7 | 1 84875173 84875173 C T comments: rs6576700 or SNP_A-1780419, a SNP in Affymetrix SNP arrays 8 | 1 13211293 13211294 TC - comments: rs59770105, a 2-bp deletion 9 | 1 11403596 11403596 - AT comments: rs35561142, a 2-bp insertion 10 | 1 105492231 105492231 A ATAAA comments: rs10552169, a block substitution 11 | 1 67705958 67705958 G A comments: rs11209026 (R381Q), a SNP in IL23R associated with Crohn's disease 12 | 2 234183368 234183368 A G comments: rs2241880 (T300A), a SNP in the ATG16L1 associated with Crohn's disease 13 | 16 50745926 50745926 C T comments: rs2066844 (R702W), a non-synonymous SNP in NOD2 14 | 16 50756540 50756540 G C comments: rs2066845 (G908R), a non-synonymous SNP in NOD2 15 | 16 50763778 50763778 - C comments: rs2066847 (c.3016_3017insC), a frameshift SNP in NOD2 16 | 13 20763686 20763686 G - comments: rs1801002 (del35G), a frameshift mutation in GJB2, associated with hearing loss 17 | 13 20797176 21105944 0 - comments: a 342kb deletion encompassing GJB6, associated with hearing loss 18 | 1 1959075 1959075 A C comments:exonic GABRD 19 | -------------------------------------------------------------------------------- /intervardb/BP1.genes.hg19: -------------------------------------------------------------------------------- 1 | AAGAB 2 | ABCA13 3 | ABCA5 4 | ABCA7 5 | ABCB4 6 | ABCC2 7 | ABCC6 8 | ABCD3 9 | ACACA 10 | ACAD11 11 | ACADVL 12 | ACBD5 13 | ACO2 14 | ACOT1 15 | ACP2 16 | ACTA2 17 | ACTA2-AS1 18 | ACTN3 19 | ACTRT3 20 | ACVR1B 21 | ADAM17 22 | ADAM9 23 | ADAMTS17 24 | ADAMTSL4 25 | ADCY1 26 | ADCY10 27 | ADGRE2 28 | ADGRG1 29 | ADGRG2 30 | ADNP 31 | ADRA2B 32 | AEBP1 33 | AFF2 34 | AFP 35 | AGBL1 36 | AGBL2 37 | AGBL5 38 | AGK 39 | AGL 40 | AGMO 41 | AGPAT2 42 | AHDC1 43 | AHR 44 | AIM2 45 | AIMP1 46 | AIMP2 47 | ALDH1A3 48 | ALDH2 49 | ALDOB 50 | ALG1 51 | ALG6 52 | ALKBH8 53 | ALMS1 54 | ALPK3 55 | ALS2 56 | ALX1 57 | AMBN 58 | AMER1 59 | AMER3 60 | AMH 61 | AMMECR1 62 | AMN 63 | AMTN 64 | ANGPTL3 65 | ANGPTL4 66 | ANK1 67 | ANKH 68 | ANKRD11 69 | ANKRD17 70 | ANKS3 71 | ANO6 72 | AP1S1 73 | AP1S2 74 | AP3B2 75 | AP3D1 76 | AP4B1 77 | AP4M1 78 | APC 79 | APC2 80 | APOA1 81 | APOA5 82 | APOPT1 83 | ARCN1 84 | ARFGEF1 85 | ARHGAP11A 86 | ARHGAP29 87 | ARHGEF1 88 | ARHGEF15 89 | ARHGEF18 90 | ARHGEF2 91 | ARID1B 92 | ARID2 93 | ARID4A 94 | ARL2BP 95 | ARL6IP1 96 | ARMC2 97 | ARMC4 98 | ARMCX5-GPRASP2 99 | ARNT2 100 | ARPC1B 101 | ARV1 102 | ASCC1 103 | ASH1L 104 | ASPM 105 | ASPSCR1 106 | ASXL1 107 | ASXL2 108 | ASXL3 109 | ATAD1 110 | ATG9B 111 | ATM 112 | ATN1 113 | ATP2A1 114 | ATP2A2 115 | ATP5L2 116 | ATP6V0A2 117 | ATP6V0C 118 | ATP8A2 119 | ATP8B3 120 | ATRIP 121 | ATXN2 122 | ATXN3 123 | ATXN7 124 | AURKC 125 | AUTS2 126 | AXIN1 127 | B3GLCT 128 | B4GALNT1 129 | B4GALT1 130 | BAP1 131 | BARD1 132 | BBIP1 133 | BBS1 134 | BBS10 135 | BBS2 136 | BCAM 137 | BCAP31 138 | BCAR1 139 | BCL10 140 | BCL11A 141 | BCL11B 142 | BCOR 143 | BDNF 144 | BDP1 145 | BICC1 146 | BICRA 147 | BLM 148 | BLOC1S3 149 | BLOC1S5 150 | BLVRA 151 | BMP2 152 | BMP7 153 | BOLA3 154 | BORCS5 155 | BPTF 156 | BRAT1 157 | BRCA1 158 | BRCA2 159 | BRD7 160 | BRIP1 161 | BRPF1 162 | BTBD6 163 | BTD 164 | BUB1B 165 | C10orf11 166 | C11orf70 167 | C11orf80 168 | C12orf4 169 | C12orf65 170 | C14orf39 171 | C15orf57 172 | C17orf107 173 | C19orf70 174 | C1QA 175 | C1QTNF5 176 | C21orf59 177 | C21orf59-TCP10L 178 | C2orf69 179 | C3AR1 180 | C4A 181 | C4B 182 | C4B_2 183 | C4orf26 184 | C5orf45 185 | C6 186 | C6orf25 187 | C7 188 | C7orf43 189 | C7orf69 190 | C8A 191 | C8B 192 | C9 193 | CABP2 194 | CABP4 195 | CACNA1B 196 | CACNA2D1 197 | CACNA2D2 198 | CACUL1 199 | CALCRL 200 | CALR 201 | CAMK4 202 | CAMTA1 203 | CAPN1 204 | CAPN10 205 | CASP14 206 | CASP2 207 | CAST 208 | CAT 209 | CATSPER1 210 | CAV1 211 | CAVIN1 212 | CAVIN4 213 | CBY1 214 | CCDC103 215 | CCDC114 216 | CCDC151 217 | CCDC174 218 | CCDC32 219 | CCDC39 220 | CCDC47 221 | CCDC65 222 | CCDC68 223 | CCDC8 224 | CCDC82 225 | CCDC88A 226 | CCM2 227 | CCNO 228 | CD151 229 | CD164 230 | CD247 231 | CD27 232 | CD2AP 233 | CD320 234 | CD36 235 | CD3D 236 | CD4 237 | CD70 238 | CD81 239 | CDC73 240 | CDCA3 241 | CDH1 242 | CDH11 243 | CDH15 244 | CDK10 245 | CDK20 246 | CDK5 247 | CDKN1C 248 | CDSN 249 | CDX2 250 | CEBPA 251 | CEBPE 252 | CEL 253 | CELSR1 254 | CENPF 255 | CENPT 256 | CEP104 257 | CEP19 258 | CEP250 259 | CEP290 260 | CEP55 261 | CEP57 262 | CEP63 263 | CEP78 264 | CERKL 265 | CFAP126 266 | CFAP206 267 | CFAP44 268 | CFAP58 269 | CFAP65 270 | CFAP69 271 | CFAP70 272 | CFD 273 | CFHR5 274 | CFTR 275 | CHAMP1 276 | CHD1L 277 | CHD2 278 | CHD7 279 | CHD8 280 | CHEK2 281 | CHIT1 282 | CHM 283 | CHP1 284 | CHRDL1 285 | CHRM3 286 | CHRNA3 287 | CHRNA7 288 | CHRND 289 | CHRNE 290 | CHST11 291 | CHUK 292 | CIC 293 | CIDEC 294 | CIITA 295 | CINP 296 | CISD2 297 | CKAP2L 298 | CLDN1 299 | CLDN9 300 | CLEC7A 301 | CLIC5 302 | CLIP1 303 | CLN3 304 | CLTC 305 | CNGB3 306 | CNKSR2 307 | CNOT2 308 | CNOT3 309 | CNTN1 310 | CNTN6 311 | COG8 312 | COL13A1 313 | COL17A1 314 | COL18A1 315 | COL1A2 316 | COL27A1 317 | COL4A2 318 | COL4A2-AS2 319 | COL4A5 320 | COL5A1 321 | COL6A3 322 | COL6A6 323 | COL9A1 324 | COL9A3 325 | COQ6 326 | COX6A1 327 | COX7B 328 | COX8A 329 | CPE 330 | CPLX1 331 | CPN1 332 | CREB3L1 333 | CRTAP 334 | CRYBA1 335 | CRYGB 336 | CSNK1E 337 | CSNK2B 338 | CSPP1 339 | CST6 340 | CSTA 341 | CTBP1 342 | CTDP1 343 | CTNNA2 344 | CTNND1 345 | CTNND2 346 | CTNS 347 | CTPS1 348 | CUL4B 349 | CUX1 350 | CWC27 351 | CWF19L1 352 | CXCR2 353 | CXorf56 354 | CYLD 355 | CYP26C1 356 | CYP2C19 357 | CYP2C8 358 | DACT1 359 | DALRD3 360 | DCAF17 361 | DCDC2 362 | DCN 363 | DDHD1 364 | DDHD2 365 | DDRGK1 366 | DDX11 367 | DDX41 368 | DENND3 369 | DENND5A 370 | DEPDC5 371 | DGKE 372 | DGKZ 373 | DGUOK 374 | DHTKD1 375 | DHX58 376 | DIAPH3 377 | DICER1 378 | DIP2B 379 | DIS3L2 380 | DISP1 381 | DIXDC1 382 | DKC1 383 | DLEC1 384 | DLG3 385 | DLG4 386 | DLL1 387 | DLX4 388 | DMD 389 | DMGDH 390 | DMP1 391 | DMPK 392 | DNAAF3 393 | DNAAF4 394 | DNAAF5 395 | DNAH1 396 | DNAH8 397 | DNAJB2 398 | DNAJC12 399 | DNAJC19 400 | DNAJC21 401 | DNAJC3 402 | DNAL4 403 | DNASE1L3 404 | DNMBP 405 | DOCK1 406 | DOCK2 407 | DOCK3 408 | DOCK7 409 | DOT1L 410 | DPRX 411 | DPYD 412 | DRC1 413 | DRD4 414 | DRG1 415 | DROSHA 416 | DRP2 417 | DSC3 418 | DSG1 419 | DSG2 420 | DSG2-AS1 421 | DSG3 422 | DSTYK 423 | DTNBP1 424 | DUOXA2 425 | DVL1 426 | DVL3 427 | DYM 428 | DYRK1A 429 | DYX1C1 430 | ECM1 431 | EEF1B2 432 | EEF1D 433 | EFNB2 434 | EFTUD2 435 | EHMT1 436 | EIF2AK4 437 | ELMO2 438 | ELN 439 | ELP1 440 | EMC10 441 | EMX2 442 | EN1 443 | ENAM 444 | ENG 445 | ENO3 446 | EPB41 447 | EPCAM 448 | EPG5 449 | EPOR 450 | EPS8 451 | EPS8L2 452 | EPT1 453 | EPX 454 | ERC1 455 | ERCC1 456 | ERCC6 457 | ERCC6L2 458 | ERCC6-PGBD3 459 | ERCC8 460 | ERF 461 | ERI1 462 | ESCO2 463 | ESPN 464 | ETS1 465 | EVC 466 | EVC2 467 | EXO1 468 | EXOC3L2 469 | EXOC6B 470 | EXOC8 471 | EXPH5 472 | EXT1 473 | EXT2 474 | EYS 475 | FAAH2 476 | FAH 477 | FAHD1 478 | FAM134B 479 | FAM136A 480 | FAM149B1 481 | FAM160B1 482 | FAM161A 483 | FAM177A1 484 | FAM186B 485 | FAM20A 486 | FAM58A 487 | FAM65B 488 | FAM83H 489 | FAM98C 490 | FANCA 491 | FANCC 492 | FANCF 493 | FANCG 494 | FANCI 495 | FANCL 496 | FAT4 497 | FBN1 498 | FBXO31 499 | FCGR1A 500 | FCGR3A 501 | FCN3 502 | FDFT1 503 | FDPS 504 | FERMT1 505 | FERMT3 506 | FGF16 507 | FGF20 508 | FIBP 509 | FIGLA 510 | FKBP14 511 | FKTN 512 | FLAD1 513 | FLCN 514 | FLG 515 | FLG2 516 | FLNB 517 | FOXC2 518 | FOXI3 519 | FOXJ1 520 | FOXN1 521 | FOXP1 522 | FOXP2 523 | FOXP4 524 | FRMD4A 525 | FRRS1L 526 | FSCN2 527 | FSIP2 528 | FUT2 529 | FUT6 530 | FUZ 531 | FYB 532 | FYCO1 533 | FZD3 534 | FZD5 535 | GABRE 536 | GALM 537 | GALNT14 538 | GALNT4 539 | GALNTL5 540 | GANAB 541 | GAS2L2 542 | GAS8 543 | GATA4 544 | GATAD2B 545 | GCOM1 546 | GDAP2 547 | GDF9 548 | GIF 549 | GLI1 550 | GLI3 551 | GLMN 552 | GLTSCR1 553 | GNB3 554 | GNB5 555 | GNG3 556 | GNPTAB 557 | GNPTG 558 | GNRH1 559 | GNS 560 | GORAB 561 | GOT1 562 | GP1BB 563 | GPC4 564 | GPC6 565 | GPNMB 566 | GPR17 567 | GPR88 568 | GPRASP2 569 | GRAMD1B 570 | GRIK2 571 | GRN 572 | GRXCR2 573 | GSC 574 | GSTZ1 575 | GTPBP2 576 | GUCY1A3 577 | GYG1 578 | GYPC 579 | GYS1 580 | GZF1 581 | HAAO 582 | HACE1 583 | HAMP 584 | HAND2 585 | HAX1 586 | HBA1 587 | HBA2 588 | HBQ1 589 | HCK 590 | HDAC8 591 | HDC 592 | HELLS 593 | HEPN1 594 | HERC1 595 | HERPUD1 596 | HEXA 597 | HID1 598 | HIST1H1E 599 | HIVEP2 600 | HMCN1 601 | HMGA2 602 | HMGB3 603 | HMOX1 604 | HNRNPR 605 | HNRNPU 606 | HOGA1 607 | HOXA1 608 | HOXA11 609 | HOXC13 610 | HPS1 611 | HPS3 612 | HPS6 613 | HPSE2 614 | HSD17B3 615 | HSD17B3-AS1 616 | HSD3B7 617 | HSF4 618 | HTR2C 619 | HYAL1 620 | HYDIN 621 | HYI 622 | HYPM 623 | ICOSLG 624 | IDS 625 | IFNAR2 626 | IFNG 627 | IFT74 628 | IFT81 629 | IGF1R 630 | IGFBP7 631 | IGSF1 632 | IGSF3 633 | IKBKAP 634 | IL12B 635 | IL17RC 636 | IL1RAPL1 637 | IL2RB 638 | ILDR1 639 | IMPA1 640 | IMPG2 641 | INPP4A 642 | IQCB1 643 | IQCE 644 | IRAK3 645 | IRAK4 646 | IREB2 647 | IRF2BPL 648 | IRS4 649 | ISG15 650 | ITCH 651 | ITGA2 652 | ITGA6 653 | ITGA8 654 | ITIH6 655 | ITPA 656 | IVNS1ABP 657 | JAG1 658 | JARID2 659 | KAT6A 660 | KAT6B 661 | KCNK18 662 | KCNN2 663 | KCNQ1 664 | KCNQ1OT1 665 | KCNQ2 666 | KCTD3 667 | KDM3B 668 | KDM5A 669 | KDM5B 670 | KDM6A 671 | KDM6B 672 | KHDC3L 673 | KIAA0556 674 | KIAA0586 675 | KIAA0753 676 | KIAA0825 677 | KIAA1161 678 | KIAA1279 679 | KIAA1549 680 | KIAA1715 681 | KIAA2022 682 | KIDINS220 683 | KIF11 684 | KIF1BP 685 | KIF26B 686 | KIF4A 687 | KIZ 688 | KLC2 689 | KLF5 690 | KLHL41 691 | KLK4 692 | KMT2A 693 | KMT2B 694 | KMT2C 695 | KMT2D 696 | KMT2E 697 | KMT5B 698 | KNG1 699 | KPNA7 700 | KPTN 701 | KRIT1 702 | KRT85 703 | KRTAP10-2 704 | KRTAP12-1 705 | KRTAP12-4 706 | KY 707 | L3MBTL1 708 | LACC1 709 | LAMA1 710 | LAMA2 711 | LAMA3 712 | LAMB3 713 | LAMC2 714 | LAMP2 715 | LARP7 716 | LAT 717 | LATS2 718 | LCA5 719 | LCP1 720 | LCT 721 | LDHAL6B 722 | LDLR 723 | LEMD3 724 | LHX4 725 | LHX4-AS1 726 | LIPE 727 | LIPN 728 | LMAN1 729 | LMBRD1 730 | LMF1 731 | LMOD1 732 | LNPK 733 | LOC100287042 734 | LOC100506321 735 | LOC100507346 736 | LOC101927055 737 | LOC101927267 738 | LOC101927751 739 | LOC101929089 740 | LOC101929680 741 | LOC102723566 742 | LOC102723833 743 | LOC102724058 744 | LOC105371049 745 | LOC109864269 746 | LOC400927-CSNK1E 747 | LOR 748 | LOXL3 749 | LPA 750 | LPIN1 751 | LPP 752 | LRFN4 753 | LRIG2 754 | LRMDA 755 | LRP5 756 | LRPAP1 757 | LRPPRC 758 | LRRC19 759 | LRRC32 760 | LRRCC1 761 | LRRK1 762 | LTBP3 763 | LTC4S 764 | LZTFL1 765 | M1AP 766 | MAB21L1 767 | MADD 768 | MAGED2 769 | MAGEL2 770 | MAGT1 771 | MAMLD1 772 | MAN2B1 773 | MANBA 774 | MAP1B 775 | MAP3K6 776 | MAPKBP1 777 | MARCKS 778 | MAX 779 | MBOAT7 780 | MCFD2 781 | MCM8 782 | MCM9 783 | MDM2 784 | MECP2 785 | MED12L 786 | MED13 787 | MED13L 788 | MED25 789 | MEI1 790 | MEIOB 791 | MEOX1 792 | MERTK 793 | MESD 794 | MESDC2 795 | METTL23 796 | METTL5 797 | MFF 798 | MFRP 799 | MGP 800 | MHRT 801 | MICAL1 802 | MICU1 803 | MICU2 804 | MIEF2 805 | MIR1225 806 | MIR4260 807 | MIR5004 808 | MIR6741 809 | MIR6766 810 | MIR6857 811 | MIR6886 812 | MIR936 813 | MKL1 814 | MLF1 815 | MLH1 816 | MLPH 817 | MME 818 | MMP1 819 | MMP19 820 | MN1 821 | MNS1 822 | MNX1 823 | MPDZ 824 | MPIG6B 825 | MPLKIP 826 | MPZL2 827 | MRAP 828 | MRE11 829 | MRE11A 830 | MRNIP 831 | MSH2 832 | MSH3 833 | MSH6 834 | MSL3 835 | MSR1 836 | MTIF2 837 | MTMR2 838 | MTRR 839 | MTX2 840 | MUC1 841 | MURC 842 | MUTYH 843 | MYH10 844 | MYH11 845 | MYH7 846 | MYLK 847 | MYO18B 848 | MYO1B 849 | MYO5B 850 | MYOD1 851 | MYSM1 852 | MYZAP 853 | N4BP2L2 854 | NAA15 855 | NADK2 856 | NANOS1 857 | NAT8L 858 | NBN 859 | NCAPD2 860 | NCF4 861 | NCKAP1 862 | NCLN 863 | NCSTN 864 | NDE1 865 | NDNF 866 | NDUFA11 867 | NDUFA12 868 | NDUFA2 869 | NDUFA4 870 | NDUFAF2 871 | NDUFB11 872 | NDUFC2 873 | NDUFS4 874 | NEB 875 | NECAP1 876 | NECTIN1 877 | NEFH 878 | NEIL1 879 | NEK2 880 | NEK4 881 | NEMF 882 | NF1 883 | NF2 884 | NFIA 885 | NFIX 886 | NFKB1 887 | NGLY1 888 | NHEJ1 889 | NHS 890 | NID1 891 | NKX3-2 892 | NLRP5 893 | NONO 894 | NOP56 895 | NOTCH3 896 | NOVA2 897 | NPC2 898 | NPM1 899 | NPPA 900 | NPRL2 901 | NPRL3 902 | NQO1 903 | NR0B2 904 | NR1H4 905 | NR2C1 906 | NR4A2 907 | NRIP1 908 | NRP2 909 | NRROS 910 | NSD2 911 | NSMCE2 912 | NSMF 913 | NT5C2 914 | NTHL1 915 | NUP188 916 | NUP37 917 | NUS1 918 | NXN 919 | OBSCN 920 | OCLN 921 | ODC1 922 | OFD1 923 | OPHN1 924 | OSBP 925 | OSBPL2 926 | OSTM1 927 | OTOGL 928 | OVCA2 929 | P3H2 930 | PABPN1 931 | PAEP 932 | PAH 933 | PALB2 934 | PAPSS2 935 | PARP10 936 | PARS2 937 | PAX6 938 | PBRM1 939 | PCBP1 940 | PCDH12 941 | PCDH15 942 | PCDHB4 943 | PCK2 944 | PCLO 945 | PDCD10 946 | PDE11A 947 | PDE6D 948 | PDE6G 949 | PDE6H 950 | PDHA1 951 | PDP1 952 | PER3 953 | PERP 954 | PET100 955 | PET117 956 | PEX1 957 | PEX10 958 | PEX11B 959 | PEX12 960 | PEX19 961 | PEX7 962 | PGAP1 963 | PGBD3 964 | PHEX 965 | PHF21A 966 | PHF8 967 | PI4KA 968 | PIDD1 969 | PIEZO1 970 | PIGN 971 | PIGP 972 | PIGQ 973 | PIH1D3 974 | PIK3C2A 975 | PIK3C2G 976 | PIKFYVE 977 | PINK1 978 | PINK1-AS 979 | PKD1 980 | PKD1L1 981 | PKD2 982 | PKDCC 983 | PKP2 984 | PLA2G2A 985 | PLA2G5 986 | PLAG1 987 | PLK2 988 | PLK4 989 | PLS3 990 | PMFBP1 991 | PMS1 992 | PMS2 993 | PMVK 994 | PNPLA8 995 | POC1B 996 | POC1B-GALNT4 997 | POC5 998 | PODXL 999 | POFUT1 1000 | POGZ 1001 | POLE 1002 | POLG 1003 | POLH 1004 | POLR2E 1005 | POLR3GL 1006 | POMC 1007 | POMP 1008 | PON3 1009 | POU3F3 1010 | PPIB 1011 | PPIL1 1012 | PPM1D 1013 | PPP1R12A 1014 | PPP1R13L 1015 | PPP1R21 1016 | PPP2R2B 1017 | PRDM2 1018 | PRDX1 1019 | PREPL 1020 | PRG4 1021 | PRKAR1A 1022 | PRKCSH 1023 | PRKRA 1024 | PRMT7 1025 | PROM1 1026 | PROS1 1027 | PRPF31 1028 | PRPH 1029 | PRR12 1030 | PRSS12 1031 | PSENEN 1032 | PSMA3 1033 | PSMB4 1034 | PSMC3IP 1035 | PSMD11 1036 | PSMD12 1037 | PTCH1 1038 | PTCHD1-AS 1039 | PTEN 1040 | PTF1A 1041 | PTHLH 1042 | PTPN14 1043 | PTPRF 1044 | PTPRO 1045 | PTPRQ 1046 | PTRF 1047 | PUF60 1048 | PUS3 1049 | PUS7 1050 | PVRL1 1051 | PYCR2 1052 | QRICH1 1053 | QRICH2 1054 | RAB28 1055 | RAB3GAP1 1056 | RAD50 1057 | RAD51C 1058 | RASA1 1059 | RB1 1060 | RBCK1 1061 | RBFOX2 1062 | RBFOX3 1063 | RBM10 1064 | RBM12 1065 | RBM8A 1066 | RC3H1 1067 | RD3 1068 | RDH11 1069 | RDH14 1070 | RECQL 1071 | RECQL4 1072 | RELB 1073 | REST 1074 | RETREG1 1075 | RFX3 1076 | RFX5 1077 | RFXANK 1078 | RGS2 1079 | RGS9BP 1080 | RHCE 1081 | RICTOR 1082 | RIMS2 1083 | RIPOR2 1084 | RIPPLY2 1085 | RNASEL 1086 | RNF135 1087 | RNF168 1088 | RNF207 1089 | RNF212 1090 | RNF43 1091 | ROBO1 1092 | ROGDI 1093 | RORB 1094 | RP1 1095 | RP2 1096 | RPGR 1097 | RPGRIP1 1098 | RPGRIP1L 1099 | RPL11 1100 | RPL15 1101 | RPL26 1102 | RPL27 1103 | RPL35A 1104 | RPL5 1105 | RPS17 1106 | RPS26 1107 | RPS27 1108 | RPS7 1109 | RSPH1 1110 | RSPH3 1111 | RSPH4A 1112 | RSPH9 1113 | RSPO1 1114 | RSRC1 1115 | RTEL1 1116 | RTEL1-TNFRSF6B 1117 | RUNX1 1118 | RUNX1T1 1119 | RUSC1-AS1 1120 | RUSC2 1121 | SACS 1122 | SALL1 1123 | SALL2 1124 | SALL4 1125 | SAMD11 1126 | SAP130 1127 | SBF2 1128 | SBF2-AS1 1129 | SCAF4 1130 | SCAPER 1131 | SCN1A 1132 | SCN5A 1133 | SCN9A 1134 | SCNN1A 1135 | SCO1 1136 | SCO2 1137 | SCP2 1138 | SCYL2 1139 | SDCCAG8 1140 | SDHA 1141 | SDHAF2 1142 | SDHD 1143 | SEC31A 1144 | SEC63 1145 | SECISBP2 1146 | SELENOI 1147 | SELENON 1148 | SELP 1149 | SEMA6B 1150 | SEPN1 1151 | SEPT12 1152 | SEPT5 1153 | SERAC1 1154 | SERPINA11 1155 | SERPINB7 1156 | SERPINB8 1157 | SERPINE1 1158 | SERPINF1 1159 | SET 1160 | SETD1A 1161 | SETD5 1162 | SEZ6 1163 | SF3B4 1164 | SFRP4 1165 | SFXN4 1166 | SGCD 1167 | SGCE 1168 | SGCG 1169 | SGO2 1170 | SGOL2 1171 | SH3GL1 1172 | SH3PXD2B 1173 | SHANK3 1174 | SIL1 1175 | SIN3A 1176 | SIPA1L3 1177 | SKIV2L 1178 | SLC12A2 1179 | SLC12A6 1180 | SLC16A1 1181 | SLC17A5 1182 | SLC19A1 1183 | SLC22A12 1184 | SLC24A1 1185 | SLC24A5 1186 | SLC25A10 1187 | SLC25A13 1188 | SLC25A19 1189 | SLC25A20 1190 | SLC26A4 1191 | SLC26A4-AS1 1192 | SLC26A7 1193 | SLC30A5 1194 | SLC30A7 1195 | SLC30A9 1196 | SLC34A2 1197 | SLC35A3 1198 | SLC35B2 1199 | SLC39A7 1200 | SLC44A1 1201 | SLC45A2 1202 | SLC51B 1203 | SLC52A1 1204 | SLC6A19 1205 | SLC6A20 1206 | SLC9A6 1207 | SLC9A9 1208 | SLCO1B1 1209 | SLITRK1 1210 | SLITRK3 1211 | SLITRK6 1212 | SLK 1213 | SMAD2 1214 | SMARCA1 1215 | SMARCAD1 1216 | SMARCD2 1217 | SMC1A 1218 | SMG9 1219 | SMOC2 1220 | SMPD4 1221 | SMPX 1222 | SNAP29 1223 | SNRPB 1224 | SNX14 1225 | SNX27 1226 | SOBP 1227 | SOHLH1 1228 | SON 1229 | SOX2 1230 | SP110 1231 | SPAG1 1232 | SPATA7 1233 | SPDL1 1234 | SPEF2 1235 | SPEN 1236 | SPG11 1237 | SPG20 1238 | SPI1 1239 | SPINK5 1240 | SPNS2 1241 | SPRED1 1242 | SPRY1 1243 | SPTBN4 1244 | SRCAP 1245 | SRD5A2 1246 | SRI 1247 | SSR3 1248 | SSR4 1249 | ST7 1250 | STAC3 1251 | STAG3 1252 | STAT2 1253 | STEAP3 1254 | STK4 1255 | STOX1 1256 | STRC 1257 | STX11 1258 | STXBP1 1259 | STXBP2 1260 | SUMF1 1261 | SUMF2 1262 | SUZ12 1263 | SVBP 1264 | SYCE1 1265 | SYCP2 1266 | SYN3 1267 | SYNCRIP 1268 | SYNE4 1269 | SYNGAP1 1270 | SYTL2 1271 | SZT2 1272 | TAB2 1273 | TAF4B 1274 | TAF8 1275 | TANC2 1276 | TAP1 1277 | TAP2 1278 | TAPBP 1279 | TAT 1280 | TAT-AS1 1281 | TBC1D20 1282 | TBC1D23 1283 | TBC1D24 1284 | TBC1D7 1285 | TBC1D7-LOC100130357 1286 | TBCE 1287 | TBCK 1288 | TBL1X 1289 | TBP 1290 | TBX15 1291 | TBX19 1292 | TBX3 1293 | TBX4 1294 | TBX6 1295 | TCERG1 1296 | TCF12 1297 | TCF20 1298 | TCF4 1299 | TCHH 1300 | TCIRG1 1301 | TCN1 1302 | TCN2 1303 | TCOF1 1304 | TCTEX1D2 1305 | TCTN3 1306 | TDP1 1307 | TDP2 1308 | TDRD7 1309 | TDRD9 1310 | TECPR2 1311 | TEX14 1312 | TEX15 1313 | TFAP2A 1314 | TGFB3 1315 | TGM3 1316 | TH2LCRR 1317 | TIMM8A 1318 | TMC6 1319 | TMCO1 1320 | TMEM237 1321 | TMEM251 1322 | TMEM256 1323 | TMEM260 1324 | TMEM94 1325 | TMLHE 1326 | TMPRSS15 1327 | TMTC3 1328 | TNFAIP3 1329 | TNFRSF10B 1330 | TNIK 1331 | TNNT1 1332 | TNNT2 1333 | TNRC6B 1334 | TOPORS 1335 | TOR1AIP1 1336 | TPP2 1337 | TPRN 1338 | TRAF5 1339 | TRAK1 1340 | TRAPPC2 1341 | TRAPPC4 1342 | TRAPPC6B 1343 | TRDN 1344 | TREH 1345 | TRH 1346 | TRHR 1347 | TRIM28 1348 | TRIM54 1349 | TRIM63 1350 | TRIM8 1351 | TRIOBP 1352 | TRIP12 1353 | TRIP13 1354 | TRIP4 1355 | TRMT1 1356 | TSC2 1357 | TSGA10 1358 | TSHR 1359 | TSHZ1 1360 | TSPEAR 1361 | TSPYL1 1362 | TTC25 1363 | TTC29 1364 | TTC37 1365 | TTC7A 1366 | TTLL5 1367 | TTN 1368 | TTN-AS1 1369 | TUB 1370 | TUBA3D 1371 | TUBGCP4 1372 | TUBGCP6 1373 | TUSC3 1374 | TXN2 1375 | TXNDC15 1376 | TXNL4A 1377 | TYK2 1378 | TYMP 1379 | UBA2 1380 | UBAP1 1381 | UBE2A 1382 | UBE4A 1383 | UBN2 1384 | UBQLN1 1385 | UBR7 1386 | UIMC1 1387 | UPK3A 1388 | USB1 1389 | USH2A 1390 | USMG5 1391 | USP18 1392 | USP51 1393 | USP7 1394 | USP9X 1395 | VAMP1 1396 | VEGFA 1397 | VEGFC 1398 | VIPAS39 1399 | VPS13A 1400 | VPS13B 1401 | VPS13C 1402 | VPS16 1403 | VPS33B 1404 | VWA1 1405 | VWCE 1406 | WAC 1407 | WASF1 1408 | WBP11 1409 | WDR45 1410 | WDR45B 1411 | WDR60 1412 | WDR66 1413 | WHSC1 1414 | WIPF1 1415 | WNK2 1416 | WNT1 1417 | WNT2B 1418 | WRN 1419 | XDH 1420 | XIAP 1421 | XK 1422 | XPA 1423 | XPC 1424 | XYLT1 1425 | YAP1 1426 | YIF1B 1427 | YY1AP1 1428 | ZBED2 1429 | ZBED4 1430 | ZBTB24 1431 | ZC3H14 1432 | ZEB1 1433 | ZEB2 1434 | ZFHX3 1435 | ZFHX4 1436 | ZFYVE26 1437 | ZIC2 1438 | ZMPSTE24 1439 | ZMYND15 1440 | ZNF148 1441 | ZNF292 1442 | ZNF341 1443 | ZNF407 1444 | ZNF446 1445 | ZNF462 1446 | ZNF711 1447 | ZNF750 1448 | ZP1 1449 | ZRSR2 1450 | -------------------------------------------------------------------------------- /intervardb/BP1.genes.hg38: -------------------------------------------------------------------------------- 1 | AAGAB 2 | ABCA13 3 | ABCA5 4 | ABCA7 5 | ABCB4 6 | ABCC2 7 | ABCC6 8 | ABCD3 9 | ACACA 10 | ACAD11 11 | ACADVL 12 | ACBD5 13 | ACO2 14 | ACOT1 15 | ACP2 16 | ACTA2 17 | ACTA2-AS1 18 | ACTN3 19 | ACTRT3 20 | ACVR1B 21 | ADAM17 22 | ADAM9 23 | ADAMTS17 24 | ADAMTSL4 25 | ADCY1 26 | ADCY10 27 | ADGRE2 28 | ADGRG1 29 | ADGRG2 30 | ADNP 31 | ADRA2B 32 | AEBP1 33 | AFF2 34 | AFP 35 | AGBL1 36 | AGBL2 37 | AGBL5 38 | AGK 39 | AGL 40 | AGMO 41 | AGPAT2 42 | AHDC1 43 | AHR 44 | AIM2 45 | AIMP1 46 | AIMP2 47 | ALDH1A3 48 | ALDH2 49 | ALDOB 50 | ALG1 51 | ALG6 52 | ALKBH8 53 | ALMS1 54 | ALPK3 55 | ALS2 56 | ALX1 57 | AMBN 58 | AMER1 59 | AMER3 60 | AMH 61 | AMMECR1 62 | AMN 63 | AMTN 64 | ANGPTL3 65 | ANGPTL4 66 | ANK1 67 | ANKH 68 | ANKRD11 69 | ANKRD17 70 | ANKS3 71 | ANO6 72 | AP1S1 73 | AP1S2 74 | AP3B2 75 | AP3D1 76 | AP4B1 77 | AP4M1 78 | APC 79 | APC2 80 | APOA1 81 | APOA5 82 | APOPT1 83 | ARCN1 84 | ARFGEF1 85 | ARHGAP11A 86 | ARHGAP29 87 | ARHGEF1 88 | ARHGEF15 89 | ARHGEF18 90 | ARHGEF2 91 | ARID1B 92 | ARID2 93 | ARID4A 94 | ARL2BP 95 | ARL6IP1 96 | ARMC2 97 | ARMC4 98 | ARMCX5-GPRASP2 99 | ARNT2 100 | ARPC1B 101 | ARV1 102 | ASCC1 103 | ASH1L 104 | ASPM 105 | ASPSCR1 106 | ASXL1 107 | ASXL2 108 | ASXL3 109 | ATAD1 110 | ATG9B 111 | ATM 112 | ATN1 113 | ATP2A1 114 | ATP2A2 115 | ATP5L2 116 | ATP6V0A2 117 | ATP6V0C 118 | ATP8A2 119 | ATP8B3 120 | ATRIP 121 | ATXN2 122 | ATXN3 123 | ATXN7 124 | AURKC 125 | AUTS2 126 | AXIN1 127 | B3GLCT 128 | B4GALNT1 129 | B4GALT1 130 | BAP1 131 | BARD1 132 | BBIP1 133 | BBS1 134 | BBS10 135 | BBS2 136 | BCAM 137 | BCAP31 138 | BCAR1 139 | BCL10 140 | BCL11A 141 | BCL11B 142 | BCOR 143 | BDNF 144 | BDP1 145 | BICC1 146 | BICRA 147 | BLM 148 | BLOC1S3 149 | BLOC1S5 150 | BLVRA 151 | BMP2 152 | BMP7 153 | BOLA3 154 | BORCS5 155 | BPTF 156 | BRAT1 157 | BRCA1 158 | BRCA2 159 | BRD7 160 | BRIP1 161 | BRPF1 162 | BTBD6 163 | BTD 164 | BUB1B 165 | C10orf11 166 | C11orf70 167 | C11orf80 168 | C12orf4 169 | C12orf65 170 | C14orf39 171 | C15orf57 172 | C17orf107 173 | C19orf70 174 | C1QA 175 | C1QTNF5 176 | C21orf59 177 | C21orf59-TCP10L 178 | C2orf69 179 | C3AR1 180 | C4A 181 | C4B 182 | C4B_2 183 | C4orf26 184 | C5orf45 185 | C6 186 | C6orf25 187 | C7 188 | C7orf43 189 | C7orf69 190 | C8A 191 | C8B 192 | C9 193 | CABP2 194 | CABP4 195 | CACNA1B 196 | CACNA2D1 197 | CACNA2D2 198 | CACUL1 199 | CALCRL 200 | CALR 201 | CAMK4 202 | CAMTA1 203 | CAPN1 204 | CAPN10 205 | CASP14 206 | CASP2 207 | CAST 208 | CAT 209 | CATSPER1 210 | CAV1 211 | CAVIN1 212 | CAVIN4 213 | CBY1 214 | CCDC103 215 | CCDC114 216 | CCDC151 217 | CCDC174 218 | CCDC32 219 | CCDC39 220 | CCDC47 221 | CCDC65 222 | CCDC68 223 | CCDC8 224 | CCDC82 225 | CCDC88A 226 | CCM2 227 | CCNO 228 | CD151 229 | CD164 230 | CD247 231 | CD27 232 | CD2AP 233 | CD320 234 | CD36 235 | CD3D 236 | CD4 237 | CD70 238 | CD81 239 | CDC73 240 | CDCA3 241 | CDH1 242 | CDH11 243 | CDH15 244 | CDK10 245 | CDK20 246 | CDK5 247 | CDKN1C 248 | CDSN 249 | CDX2 250 | CEBPA 251 | CEBPE 252 | CEL 253 | CELSR1 254 | CENPF 255 | CENPT 256 | CEP104 257 | CEP19 258 | CEP250 259 | CEP290 260 | CEP55 261 | CEP57 262 | CEP63 263 | CEP78 264 | CERKL 265 | CFAP126 266 | CFAP206 267 | CFAP44 268 | CFAP58 269 | CFAP65 270 | CFAP69 271 | CFAP70 272 | CFD 273 | CFHR5 274 | CFTR 275 | CHAMP1 276 | CHD1L 277 | CHD2 278 | CHD7 279 | CHD8 280 | CHEK2 281 | CHIT1 282 | CHM 283 | CHP1 284 | CHRDL1 285 | CHRM3 286 | CHRNA3 287 | CHRNA7 288 | CHRND 289 | CHRNE 290 | CHST11 291 | CHUK 292 | CIC 293 | CIDEC 294 | CIITA 295 | CINP 296 | CISD2 297 | CKAP2L 298 | CLDN1 299 | CLDN9 300 | CLEC7A 301 | CLIC5 302 | CLIP1 303 | CLN3 304 | CLTC 305 | CNGB3 306 | CNKSR2 307 | CNOT2 308 | CNOT3 309 | CNTN1 310 | CNTN6 311 | COG8 312 | COL13A1 313 | COL17A1 314 | COL18A1 315 | COL1A2 316 | COL27A1 317 | COL4A2 318 | COL4A2-AS2 319 | COL4A5 320 | COL5A1 321 | COL6A3 322 | COL6A6 323 | COL9A1 324 | COL9A3 325 | COQ6 326 | COX6A1 327 | COX7B 328 | COX8A 329 | CPE 330 | CPLX1 331 | CPN1 332 | CREB3L1 333 | CRTAP 334 | CRYBA1 335 | CRYGB 336 | CSNK1E 337 | CSNK2B 338 | CSPP1 339 | CST6 340 | CSTA 341 | CTBP1 342 | CTDP1 343 | CTNNA2 344 | CTNND1 345 | CTNND2 346 | CTNS 347 | CTPS1 348 | CUL4B 349 | CUX1 350 | CWC27 351 | CWF19L1 352 | CXCR2 353 | CXorf56 354 | CYLD 355 | CYP26C1 356 | CYP2C19 357 | CYP2C8 358 | DACT1 359 | DALRD3 360 | DCAF17 361 | DCDC2 362 | DCN 363 | DDHD1 364 | DDHD2 365 | DDRGK1 366 | DDX11 367 | DDX41 368 | DENND3 369 | DENND5A 370 | DEPDC5 371 | DGKE 372 | DGKZ 373 | DGUOK 374 | DHTKD1 375 | DHX58 376 | DIAPH3 377 | DICER1 378 | DIP2B 379 | DIS3L2 380 | DISP1 381 | DIXDC1 382 | DKC1 383 | DLEC1 384 | DLG3 385 | DLG4 386 | DLL1 387 | DLX4 388 | DMD 389 | DMGDH 390 | DMP1 391 | DMPK 392 | DNAAF3 393 | DNAAF4 394 | DNAAF5 395 | DNAH1 396 | DNAH8 397 | DNAJB2 398 | DNAJC12 399 | DNAJC19 400 | DNAJC21 401 | DNAJC3 402 | DNAL4 403 | DNASE1L3 404 | DNMBP 405 | DOCK1 406 | DOCK2 407 | DOCK3 408 | DOCK7 409 | DOT1L 410 | DPRX 411 | DPYD 412 | DRC1 413 | DRD4 414 | DRG1 415 | DROSHA 416 | DRP2 417 | DSC3 418 | DSG1 419 | DSG2 420 | DSG2-AS1 421 | DSG3 422 | DSTYK 423 | DTNBP1 424 | DUOXA2 425 | DVL1 426 | DVL3 427 | DYM 428 | DYRK1A 429 | DYX1C1 430 | ECM1 431 | EEF1B2 432 | EEF1D 433 | EFNB2 434 | EFTUD2 435 | EHMT1 436 | EIF2AK4 437 | ELMO2 438 | ELN 439 | ELP1 440 | EMC10 441 | EMX2 442 | EN1 443 | ENAM 444 | ENG 445 | ENO3 446 | EPB41 447 | EPCAM 448 | EPG5 449 | EPOR 450 | EPS8 451 | EPS8L2 452 | EPT1 453 | EPX 454 | ERC1 455 | ERCC1 456 | ERCC6 457 | ERCC6L2 458 | ERCC6-PGBD3 459 | ERCC8 460 | ERF 461 | ERI1 462 | ESCO2 463 | ESPN 464 | ETS1 465 | EVC 466 | EVC2 467 | EXO1 468 | EXOC3L2 469 | EXOC6B 470 | EXOC8 471 | EXPH5 472 | EXT1 473 | EXT2 474 | EYS 475 | FAAH2 476 | FAH 477 | FAHD1 478 | FAM134B 479 | FAM136A 480 | FAM149B1 481 | FAM160B1 482 | FAM161A 483 | FAM177A1 484 | FAM186B 485 | FAM20A 486 | FAM58A 487 | FAM65B 488 | FAM83H 489 | FAM98C 490 | FANCA 491 | FANCC 492 | FANCF 493 | FANCG 494 | FANCI 495 | FANCL 496 | FAT4 497 | FBN1 498 | FBXO31 499 | FCGR1A 500 | FCGR3A 501 | FCN3 502 | FDFT1 503 | FDPS 504 | FERMT1 505 | FERMT3 506 | FGF16 507 | FGF20 508 | FIBP 509 | FIGLA 510 | FKBP14 511 | FKTN 512 | FLAD1 513 | FLCN 514 | FLG 515 | FLG2 516 | FLNB 517 | FOXC2 518 | FOXI3 519 | FOXJ1 520 | FOXN1 521 | FOXP1 522 | FOXP2 523 | FOXP4 524 | FRMD4A 525 | FRRS1L 526 | FSCN2 527 | FSIP2 528 | FUT2 529 | FUT6 530 | FUZ 531 | FYB 532 | FYCO1 533 | FZD3 534 | FZD5 535 | GABRE 536 | GALM 537 | GALNT14 538 | GALNT4 539 | GALNTL5 540 | GANAB 541 | GAS2L2 542 | GAS8 543 | GATA4 544 | GATAD2B 545 | GCOM1 546 | GDAP2 547 | GDF9 548 | GIF 549 | GLI1 550 | GLI3 551 | GLMN 552 | GLTSCR1 553 | GNB3 554 | GNB5 555 | GNG3 556 | GNPTAB 557 | GNPTG 558 | GNRH1 559 | GNS 560 | GORAB 561 | GOT1 562 | GP1BB 563 | GPC4 564 | GPC6 565 | GPNMB 566 | GPR17 567 | GPR88 568 | GPRASP2 569 | GRAMD1B 570 | GRIK2 571 | GRN 572 | GRXCR2 573 | GSC 574 | GSTZ1 575 | GTPBP2 576 | GUCY1A3 577 | GYG1 578 | GYPC 579 | GYS1 580 | GZF1 581 | HAAO 582 | HACE1 583 | HAMP 584 | HAND2 585 | HAX1 586 | HBA1 587 | HBA2 588 | HBQ1 589 | HCK 590 | HDAC8 591 | HDC 592 | HELLS 593 | HEPN1 594 | HERC1 595 | HERPUD1 596 | HEXA 597 | HID1 598 | HIST1H1E 599 | HIVEP2 600 | HMCN1 601 | HMGA2 602 | HMGB3 603 | HMOX1 604 | HNRNPR 605 | HNRNPU 606 | HOGA1 607 | HOXA1 608 | HOXA11 609 | HOXC13 610 | HPS1 611 | HPS3 612 | HPS6 613 | HPSE2 614 | HSD17B3 615 | HSD17B3-AS1 616 | HSD3B7 617 | HSF4 618 | HTR2C 619 | HYAL1 620 | HYDIN 621 | HYI 622 | HYPM 623 | ICOSLG 624 | IDS 625 | IFNAR2 626 | IFNG 627 | IFT74 628 | IFT81 629 | IGF1R 630 | IGFBP7 631 | IGSF1 632 | IGSF3 633 | IKBKAP 634 | IL12B 635 | IL17RC 636 | IL1RAPL1 637 | IL2RB 638 | ILDR1 639 | IMPA1 640 | IMPG2 641 | INPP4A 642 | IQCB1 643 | IQCE 644 | IRAK3 645 | IRAK4 646 | IREB2 647 | IRF2BPL 648 | IRS4 649 | ISG15 650 | ITCH 651 | ITGA2 652 | ITGA6 653 | ITGA8 654 | ITIH6 655 | ITPA 656 | IVNS1ABP 657 | JAG1 658 | JARID2 659 | KAT6A 660 | KAT6B 661 | KCNK18 662 | KCNN2 663 | KCNQ1 664 | KCNQ1OT1 665 | KCNQ2 666 | KCTD3 667 | KDM3B 668 | KDM5A 669 | KDM5B 670 | KDM6A 671 | KDM6B 672 | KHDC3L 673 | KIAA0556 674 | KIAA0586 675 | KIAA0753 676 | KIAA0825 677 | KIAA1161 678 | KIAA1279 679 | KIAA1549 680 | KIAA1715 681 | KIAA2022 682 | KIDINS220 683 | KIF11 684 | KIF1BP 685 | KIF26B 686 | KIF4A 687 | KIZ 688 | KLC2 689 | KLF5 690 | KLHL41 691 | KLK4 692 | KMT2A 693 | KMT2B 694 | KMT2C 695 | KMT2D 696 | KMT2E 697 | KMT5B 698 | KNG1 699 | KPNA7 700 | KPTN 701 | KRIT1 702 | KRT85 703 | KRTAP10-2 704 | KRTAP12-1 705 | KRTAP12-4 706 | KY 707 | L3MBTL1 708 | LACC1 709 | LAMA1 710 | LAMA2 711 | LAMA3 712 | LAMB3 713 | LAMC2 714 | LAMP2 715 | LARP7 716 | LAT 717 | LATS2 718 | LCA5 719 | LCP1 720 | LCT 721 | LDHAL6B 722 | LDLR 723 | LEMD3 724 | LHX4 725 | LHX4-AS1 726 | LIPE 727 | LIPN 728 | LMAN1 729 | LMBRD1 730 | LMF1 731 | LMOD1 732 | LNPK 733 | LOC100287042 734 | LOC100506321 735 | LOC100507346 736 | LOC101927055 737 | LOC101927267 738 | LOC101927751 739 | LOC101929089 740 | LOC101929680 741 | LOC102723566 742 | LOC102723833 743 | LOC102724058 744 | LOC105371049 745 | LOC109864269 746 | LOC400927-CSNK1E 747 | LOR 748 | LOXL3 749 | LPA 750 | LPIN1 751 | LPP 752 | LRFN4 753 | LRIG2 754 | LRMDA 755 | LRP5 756 | LRPAP1 757 | LRPPRC 758 | LRRC19 759 | LRRC32 760 | LRRCC1 761 | LRRK1 762 | LTBP3 763 | LTC4S 764 | LZTFL1 765 | M1AP 766 | MAB21L1 767 | MADD 768 | MAGED2 769 | MAGEL2 770 | MAGT1 771 | MAMLD1 772 | MAN2B1 773 | MANBA 774 | MAP1B 775 | MAP3K6 776 | MAPKBP1 777 | MARCKS 778 | MAX 779 | MBOAT7 780 | MCFD2 781 | MCM8 782 | MCM9 783 | MDM2 784 | MECP2 785 | MED12L 786 | MED13 787 | MED13L 788 | MED25 789 | MEI1 790 | MEIOB 791 | MEOX1 792 | MERTK 793 | MESD 794 | MESDC2 795 | METTL23 796 | METTL5 797 | MFF 798 | MFRP 799 | MGP 800 | MHRT 801 | MICAL1 802 | MICU1 803 | MICU2 804 | MIEF2 805 | MIR1225 806 | MIR4260 807 | MIR5004 808 | MIR6741 809 | MIR6766 810 | MIR6857 811 | MIR6886 812 | MIR936 813 | MKL1 814 | MLF1 815 | MLH1 816 | MLPH 817 | MME 818 | MMP1 819 | MMP19 820 | MN1 821 | MNS1 822 | MNX1 823 | MPDZ 824 | MPIG6B 825 | MPLKIP 826 | MPZL2 827 | MRAP 828 | MRE11 829 | MRE11A 830 | MRNIP 831 | MSH2 832 | MSH3 833 | MSH6 834 | MSL3 835 | MSR1 836 | MTIF2 837 | MTMR2 838 | MTRR 839 | MTX2 840 | MUC1 841 | MURC 842 | MUTYH 843 | MYH10 844 | MYH11 845 | MYH7 846 | MYLK 847 | MYO18B 848 | MYO1B 849 | MYO5B 850 | MYOD1 851 | MYSM1 852 | MYZAP 853 | N4BP2L2 854 | NAA15 855 | NADK2 856 | NANOS1 857 | NAT8L 858 | NBN 859 | NCAPD2 860 | NCF4 861 | NCKAP1 862 | NCLN 863 | NCSTN 864 | NDE1 865 | NDNF 866 | NDUFA11 867 | NDUFA12 868 | NDUFA2 869 | NDUFA4 870 | NDUFAF2 871 | NDUFB11 872 | NDUFC2 873 | NDUFS4 874 | NEB 875 | NECAP1 876 | NECTIN1 877 | NEFH 878 | NEIL1 879 | NEK2 880 | NEK4 881 | NEMF 882 | NF1 883 | NF2 884 | NFIA 885 | NFIX 886 | NFKB1 887 | NGLY1 888 | NHEJ1 889 | NHS 890 | NID1 891 | NKX3-2 892 | NLRP5 893 | NONO 894 | NOP56 895 | NOTCH3 896 | NOVA2 897 | NPC2 898 | NPM1 899 | NPPA 900 | NPRL2 901 | NPRL3 902 | NQO1 903 | NR0B2 904 | NR1H4 905 | NR2C1 906 | NR4A2 907 | NRIP1 908 | NRP2 909 | NRROS 910 | NSD2 911 | NSMCE2 912 | NSMF 913 | NT5C2 914 | NTHL1 915 | NUP188 916 | NUP37 917 | NUS1 918 | NXN 919 | OBSCN 920 | OCLN 921 | ODC1 922 | OFD1 923 | OPHN1 924 | OSBP 925 | OSBPL2 926 | OSTM1 927 | OTOGL 928 | OVCA2 929 | P3H2 930 | PABPN1 931 | PAEP 932 | PAH 933 | PALB2 934 | PAPSS2 935 | PARP10 936 | PARS2 937 | PAX6 938 | PBRM1 939 | PCBP1 940 | PCDH12 941 | PCDH15 942 | PCDHB4 943 | PCK2 944 | PCLO 945 | PDCD10 946 | PDE11A 947 | PDE6D 948 | PDE6G 949 | PDE6H 950 | PDHA1 951 | PDP1 952 | PER3 953 | PERP 954 | PET100 955 | PET117 956 | PEX1 957 | PEX10 958 | PEX11B 959 | PEX12 960 | PEX19 961 | PEX7 962 | PGAP1 963 | PGBD3 964 | PHEX 965 | PHF21A 966 | PHF8 967 | PI4KA 968 | PIDD1 969 | PIEZO1 970 | PIGN 971 | PIGP 972 | PIGQ 973 | PIH1D3 974 | PIK3C2A 975 | PIK3C2G 976 | PIKFYVE 977 | PINK1 978 | PINK1-AS 979 | PKD1 980 | PKD1L1 981 | PKD2 982 | PKDCC 983 | PKP2 984 | PLA2G2A 985 | PLA2G5 986 | PLAG1 987 | PLK2 988 | PLK4 989 | PLS3 990 | PMFBP1 991 | PMS1 992 | PMS2 993 | PMVK 994 | PNPLA8 995 | POC1B 996 | POC1B-GALNT4 997 | POC5 998 | PODXL 999 | POFUT1 1000 | POGZ 1001 | POLE 1002 | POLG 1003 | POLH 1004 | POLR2E 1005 | POLR3GL 1006 | POMC 1007 | POMP 1008 | PON3 1009 | POU3F3 1010 | PPIB 1011 | PPIL1 1012 | PPM1D 1013 | PPP1R12A 1014 | PPP1R13L 1015 | PPP1R21 1016 | PPP2R2B 1017 | PRDM2 1018 | PRDX1 1019 | PREPL 1020 | PRG4 1021 | PRKAR1A 1022 | PRKCSH 1023 | PRKRA 1024 | PRMT7 1025 | PROM1 1026 | PROS1 1027 | PRPF31 1028 | PRPH 1029 | PRR12 1030 | PRSS12 1031 | PSENEN 1032 | PSMA3 1033 | PSMB4 1034 | PSMC3IP 1035 | PSMD11 1036 | PSMD12 1037 | PTCH1 1038 | PTCHD1-AS 1039 | PTEN 1040 | PTF1A 1041 | PTHLH 1042 | PTPN14 1043 | PTPRF 1044 | PTPRO 1045 | PTPRQ 1046 | PTRF 1047 | PUF60 1048 | PUS3 1049 | PUS7 1050 | PVRL1 1051 | PYCR2 1052 | QRICH1 1053 | QRICH2 1054 | RAB28 1055 | RAB3GAP1 1056 | RAD50 1057 | RAD51C 1058 | RASA1 1059 | RB1 1060 | RBCK1 1061 | RBFOX2 1062 | RBFOX3 1063 | RBM10 1064 | RBM12 1065 | RBM8A 1066 | RC3H1 1067 | RD3 1068 | RDH11 1069 | RDH14 1070 | RECQL 1071 | RECQL4 1072 | RELB 1073 | REST 1074 | RETREG1 1075 | RFX3 1076 | RFX5 1077 | RFXANK 1078 | RGS2 1079 | RGS9BP 1080 | RHCE 1081 | RICTOR 1082 | RIMS2 1083 | RIPOR2 1084 | RIPPLY2 1085 | RNASEL 1086 | RNF135 1087 | RNF168 1088 | RNF207 1089 | RNF212 1090 | RNF43 1091 | ROBO1 1092 | ROGDI 1093 | RORB 1094 | RP1 1095 | RP2 1096 | RPGR 1097 | RPGRIP1 1098 | RPGRIP1L 1099 | RPL11 1100 | RPL15 1101 | RPL26 1102 | RPL27 1103 | RPL35A 1104 | RPL5 1105 | RPS17 1106 | RPS26 1107 | RPS27 1108 | RPS7 1109 | RSPH1 1110 | RSPH3 1111 | RSPH4A 1112 | RSPH9 1113 | RSPO1 1114 | RSRC1 1115 | RTEL1 1116 | RTEL1-TNFRSF6B 1117 | RUNX1 1118 | RUNX1T1 1119 | RUSC1-AS1 1120 | RUSC2 1121 | SACS 1122 | SALL1 1123 | SALL2 1124 | SALL4 1125 | SAMD11 1126 | SAP130 1127 | SBF2 1128 | SBF2-AS1 1129 | SCAF4 1130 | SCAPER 1131 | SCN1A 1132 | SCN5A 1133 | SCN9A 1134 | SCNN1A 1135 | SCO1 1136 | SCO2 1137 | SCP2 1138 | SCYL2 1139 | SDCCAG8 1140 | SDHA 1141 | SDHAF2 1142 | SDHD 1143 | SEC31A 1144 | SEC63 1145 | SECISBP2 1146 | SELENOI 1147 | SELENON 1148 | SELP 1149 | SEMA6B 1150 | SEPN1 1151 | SEPT12 1152 | SEPT5 1153 | SERAC1 1154 | SERPINA11 1155 | SERPINB7 1156 | SERPINB8 1157 | SERPINE1 1158 | SERPINF1 1159 | SET 1160 | SETD1A 1161 | SETD5 1162 | SEZ6 1163 | SF3B4 1164 | SFRP4 1165 | SFXN4 1166 | SGCD 1167 | SGCE 1168 | SGCG 1169 | SGO2 1170 | SGOL2 1171 | SH3GL1 1172 | SH3PXD2B 1173 | SHANK3 1174 | SIL1 1175 | SIN3A 1176 | SIPA1L3 1177 | SKIV2L 1178 | SLC12A2 1179 | SLC12A6 1180 | SLC16A1 1181 | SLC17A5 1182 | SLC19A1 1183 | SLC22A12 1184 | SLC24A1 1185 | SLC24A5 1186 | SLC25A10 1187 | SLC25A13 1188 | SLC25A19 1189 | SLC25A20 1190 | SLC26A4 1191 | SLC26A4-AS1 1192 | SLC26A7 1193 | SLC30A5 1194 | SLC30A7 1195 | SLC30A9 1196 | SLC34A2 1197 | SLC35A3 1198 | SLC35B2 1199 | SLC39A7 1200 | SLC44A1 1201 | SLC45A2 1202 | SLC51B 1203 | SLC52A1 1204 | SLC6A19 1205 | SLC6A20 1206 | SLC9A6 1207 | SLC9A9 1208 | SLCO1B1 1209 | SLITRK1 1210 | SLITRK3 1211 | SLITRK6 1212 | SLK 1213 | SMAD2 1214 | SMARCA1 1215 | SMARCAD1 1216 | SMARCD2 1217 | SMC1A 1218 | SMG9 1219 | SMOC2 1220 | SMPD4 1221 | SMPX 1222 | SNAP29 1223 | SNRPB 1224 | SNX14 1225 | SNX27 1226 | SOBP 1227 | SOHLH1 1228 | SON 1229 | SOX2 1230 | SP110 1231 | SPAG1 1232 | SPATA7 1233 | SPDL1 1234 | SPEF2 1235 | SPEN 1236 | SPG11 1237 | SPG20 1238 | SPI1 1239 | SPINK5 1240 | SPNS2 1241 | SPRED1 1242 | SPRY1 1243 | SPTBN4 1244 | SRCAP 1245 | SRD5A2 1246 | SRI 1247 | SSR3 1248 | SSR4 1249 | ST7 1250 | STAC3 1251 | STAG3 1252 | STAT2 1253 | STEAP3 1254 | STK4 1255 | STOX1 1256 | STRC 1257 | STX11 1258 | STXBP1 1259 | STXBP2 1260 | SUMF1 1261 | SUMF2 1262 | SUZ12 1263 | SVBP 1264 | SYCE1 1265 | SYCP2 1266 | SYN3 1267 | SYNCRIP 1268 | SYNE4 1269 | SYNGAP1 1270 | SYTL2 1271 | SZT2 1272 | TAB2 1273 | TAF4B 1274 | TAF8 1275 | TANC2 1276 | TAP1 1277 | TAP2 1278 | TAPBP 1279 | TAT 1280 | TAT-AS1 1281 | TBC1D20 1282 | TBC1D23 1283 | TBC1D24 1284 | TBC1D7 1285 | TBC1D7-LOC100130357 1286 | TBCE 1287 | TBCK 1288 | TBL1X 1289 | TBP 1290 | TBX15 1291 | TBX19 1292 | TBX3 1293 | TBX4 1294 | TBX6 1295 | TCERG1 1296 | TCF12 1297 | TCF20 1298 | TCF4 1299 | TCHH 1300 | TCIRG1 1301 | TCN1 1302 | TCN2 1303 | TCOF1 1304 | TCTEX1D2 1305 | TCTN3 1306 | TDP1 1307 | TDP2 1308 | TDRD7 1309 | TDRD9 1310 | TECPR2 1311 | TEX14 1312 | TEX15 1313 | TFAP2A 1314 | TGFB3 1315 | TGM3 1316 | TH2LCRR 1317 | TIMM8A 1318 | TMC6 1319 | TMCO1 1320 | TMEM237 1321 | TMEM251 1322 | TMEM256 1323 | TMEM260 1324 | TMEM94 1325 | TMLHE 1326 | TMPRSS15 1327 | TMTC3 1328 | TNFAIP3 1329 | TNFRSF10B 1330 | TNIK 1331 | TNNT1 1332 | TNNT2 1333 | TNRC6B 1334 | TOPORS 1335 | TOR1AIP1 1336 | TPP2 1337 | TPRN 1338 | TRAF5 1339 | TRAK1 1340 | TRAPPC2 1341 | TRAPPC4 1342 | TRAPPC6B 1343 | TRDN 1344 | TREH 1345 | TRH 1346 | TRHR 1347 | TRIM28 1348 | TRIM54 1349 | TRIM63 1350 | TRIM8 1351 | TRIOBP 1352 | TRIP12 1353 | TRIP13 1354 | TRIP4 1355 | TRMT1 1356 | TSC2 1357 | TSGA10 1358 | TSHR 1359 | TSHZ1 1360 | TSPEAR 1361 | TSPYL1 1362 | TTC25 1363 | TTC29 1364 | TTC37 1365 | TTC7A 1366 | TTLL5 1367 | TTN 1368 | TTN-AS1 1369 | TUB 1370 | TUBA3D 1371 | TUBGCP4 1372 | TUBGCP6 1373 | TUSC3 1374 | TXN2 1375 | TXNDC15 1376 | TXNL4A 1377 | TYK2 1378 | TYMP 1379 | UBA2 1380 | UBAP1 1381 | UBE2A 1382 | UBE4A 1383 | UBN2 1384 | UBQLN1 1385 | UBR7 1386 | UIMC1 1387 | UPK3A 1388 | USB1 1389 | USH2A 1390 | USMG5 1391 | USP18 1392 | USP51 1393 | USP7 1394 | USP9X 1395 | VAMP1 1396 | VEGFA 1397 | VEGFC 1398 | VIPAS39 1399 | VPS13A 1400 | VPS13B 1401 | VPS13C 1402 | VPS16 1403 | VPS33B 1404 | VWA1 1405 | VWCE 1406 | WAC 1407 | WASF1 1408 | WBP11 1409 | WDR45 1410 | WDR45B 1411 | WDR60 1412 | WDR66 1413 | WHSC1 1414 | WIPF1 1415 | WNK2 1416 | WNT1 1417 | WNT2B 1418 | WRN 1419 | XDH 1420 | XIAP 1421 | XK 1422 | XPA 1423 | XPC 1424 | XYLT1 1425 | YAP1 1426 | YIF1B 1427 | YY1AP1 1428 | ZBED2 1429 | ZBED4 1430 | ZBTB24 1431 | ZC3H14 1432 | ZEB1 1433 | ZEB2 1434 | ZFHX3 1435 | ZFHX4 1436 | ZFYVE26 1437 | ZIC2 1438 | ZMPSTE24 1439 | ZMYND15 1440 | ZNF148 1441 | ZNF292 1442 | ZNF341 1443 | ZNF407 1444 | ZNF446 1445 | ZNF462 1446 | ZNF711 1447 | ZNF750 1448 | ZP1 1449 | ZRSR2 1450 | -------------------------------------------------------------------------------- /intervardb/BS2_hom_het.hg19: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WGLab/InterVar/4801682d37982bb3e99b50392790878a568b42cd/intervardb/BS2_hom_het.hg19 -------------------------------------------------------------------------------- /intervardb/BS2_hom_het.hg38: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WGLab/InterVar/4801682d37982bb3e99b50392790878a568b42cd/intervardb/BS2_hom_het.hg38 -------------------------------------------------------------------------------- /intervardb/PP2.genes.hg19: -------------------------------------------------------------------------------- 1 | AAR2 2 | ABL1 3 | ACER3 4 | ACO2 5 | ACOT4 6 | ACPT 7 | ACTA1 8 | ACTA2 9 | ACTB 10 | ACTC1 11 | ACTG1 12 | ACTG2 13 | ACTL6A 14 | ACTL6B 15 | ACTN1 16 | ACVR2B 17 | ADAMTS3 18 | ADCY6 19 | ADGRB2 20 | ADGRB3 21 | ADGRE2 22 | ADIPOQ 23 | ADK 24 | AFF3 25 | AGBL5 26 | AGO2 27 | AGPS 28 | AGRP 29 | AHSG 30 | AKR1C2 31 | AKT1 32 | AKT2 33 | AKT3 34 | ALAD 35 | ALDH1A3 36 | ALDH2 37 | ALDOA 38 | AMOT 39 | AMOTL1 40 | AMPD1 41 | ANGPT1 42 | ANLN 43 | ANO3 44 | ANXA11 45 | AP1G2 46 | AP2M1 47 | AP2S1 48 | APCDD1 49 | APOH 50 | AQP1 51 | AQP4 52 | AQP5 53 | ARAF 54 | ARF1 55 | ARHGAP21 56 | ARHGAP26 57 | ARHGEF10L 58 | ARL14EP 59 | ARL16 60 | ARL2 61 | ARL3 62 | ARPC1B 63 | ARSG 64 | ASH2L 65 | ASIC5 66 | ASPRV1 67 | ASTN1 68 | ATCAY 69 | ATG5 70 | ATP11C 71 | ATP1A1 72 | ATP1A3 73 | ATP2B2 74 | ATP5D 75 | ATP5E 76 | ATP6AP1 77 | ATP6V0A1 78 | ATP6V1A 79 | ATP6V1E1 80 | AURKA 81 | AVP 82 | B2M 83 | B3GNT6 84 | BANF1 85 | BAZ1A 86 | BCL2L12 87 | BCO1 88 | BMP1 89 | BMP6 90 | BMS1 91 | BRD4 92 | BRDT 93 | BRF1 94 | BRWD1 95 | C15orf41 96 | C1QBP 97 | C1QTNF5 98 | CA1 99 | CACNA1B 100 | CACNA1C 101 | CACNA1E 102 | CACNA1G 103 | CACNB4 104 | CACNG7 105 | CALHM1 106 | CALM1 107 | CALM3 108 | CAMK2G 109 | CAPN14 110 | CAPZA2 111 | CARNMT1 112 | CASQ1 113 | CAV3 114 | CBX2 115 | CCDC115 116 | CCNK 117 | CCT7 118 | CD207 119 | CD3EAP 120 | CDC42 121 | CDC45 122 | CDH2 123 | CDH4 124 | CDK12 125 | CDK13 126 | CDK19 127 | CDK4 128 | CDK8 129 | CDKL5 130 | CDKN2C 131 | CEP76 132 | CEP97 133 | CERS1 134 | CFAP47 135 | CFHR3 136 | CHAF1B 137 | CHCHD2 138 | CHD1 139 | CHD4 140 | CHMP4B 141 | CHN1 142 | CHRNA1 143 | CHRNE 144 | CHST8 145 | CIB2 146 | CISD2 147 | CKM 148 | CLCC1 149 | CLCN3 150 | CLCN4 151 | CLCN7 152 | CLDN10 153 | CLDN2 154 | CLGN 155 | CLHC1 156 | CLIC4 157 | CLPP 158 | CLPX 159 | CLRN2 160 | CNOT9 161 | CNP 162 | CNPY3-GNMT 163 | COA5 164 | COCH 165 | COPB2 166 | COQ6 167 | CORIN 168 | CORO7-PAM16 169 | COX6A2 170 | COX6B1 171 | CPZ 172 | CRADD 173 | CRAT 174 | CRLF2 175 | CRNKL1 176 | CRYAA 177 | CRYBB2 178 | CRYGA 179 | CSNK1D 180 | CSRP2BP 181 | CST3 182 | CTBP1 183 | CTHRC1 184 | CUX2 185 | CYBA 186 | CYCS 187 | CYFIP2 188 | CYP2C9 189 | CYP2R1 190 | DARS 191 | DCAF6 192 | DCAF8 193 | DCDC2 194 | DCPS 195 | DDX39A 196 | DDX54 197 | DDX59 198 | DDX6 199 | DENND4B 200 | DHCR24 201 | DHDDS 202 | DHFR 203 | DHODH 204 | DHX30 205 | DHX37 206 | DHX38 207 | DIS3 208 | DKC1 209 | DLC1 210 | DLST 211 | DMBX1 212 | DMRT1 213 | DNAJB5 214 | DNAJC13 215 | DNAJC30 216 | DPAGT1 217 | DPM3 218 | DPT 219 | DPYSL2 220 | DSCAML1 221 | DUSP6 222 | ECHS1 223 | EDC3 224 | EDEM3 225 | EDNRA 226 | EED 227 | EFL1 228 | EFTUD1 229 | EGFR 230 | EI24 231 | EIF1AX 232 | EIF2AK2 233 | EIF2B5 234 | EIF3F 235 | EIF4A3 236 | EIF5A 237 | ELF2 238 | ELOC 239 | ELOVL1 240 | ELOVL5 241 | EPB41L4A 242 | EPHA4 243 | EPHA5 244 | ERAL1 245 | ERBB3 246 | ERBB4 247 | ERCC5 248 | ERCC6-PGBD3 249 | ERGIC1 250 | ERLEC1 251 | ESR2 252 | EXOC4 253 | EXOSC2 254 | EXOSC8 255 | EZH2 256 | F2 257 | F7 258 | FADD 259 | FAM111A 260 | FAM120AOS 261 | FAM222A 262 | FANCI 263 | FARSA 264 | FASTKD1 265 | FBRS 266 | FBXW11 267 | FBXW7 268 | FDPS 269 | FGF12 270 | FGF17 271 | FGF18 272 | FGF23 273 | FGF9 274 | FGFR4 275 | FLI1 276 | FLT3 277 | FN1 278 | FOXE1 279 | FOXI1 280 | FSHR 281 | G6PD 282 | GAB1 283 | GABBR2 284 | GABRA2 285 | GAD1 286 | GAL3ST2 287 | GARNL3 288 | GART 289 | GATA4 290 | GATA5 291 | GATC 292 | GCGR 293 | GCLC 294 | GDF11 295 | GEMIN4 296 | GGCX 297 | GIGYF2 298 | GINS1 299 | GJA1 300 | GJA5 301 | GJB4 302 | GLE1 303 | GLUD2 304 | GLUL 305 | GNA11 306 | GNA14 307 | GNAI2 308 | GNAI3 309 | GNAO1 310 | GNB1 311 | GNB2 312 | GNMT 313 | GNRHR 314 | GP9 315 | GPD2 316 | GPI 317 | GPIHBP1 318 | GPR153 319 | GPR161 320 | GRAP 321 | GREM2 322 | GRIA2 323 | GRIA4 324 | GRID2 325 | GRK1 326 | GRM7 327 | GSPT2 328 | GSS 329 | GTF2E2 330 | GTF2IRD1 331 | GTF3C1 332 | GUCA1A 333 | H3F3A 334 | HBG2 335 | HCRT 336 | HDAC1 337 | HDAC3 338 | HECW2 339 | HELZ 340 | HGF 341 | HHAT 342 | HINT1 343 | HIST1H2AL 344 | HIST1H2AM 345 | HIST1H3A 346 | HIST1H3I 347 | HIVEP1 348 | HK1 349 | HMX1 350 | HNF4A 351 | HNRNPA2B1 352 | HNRNPH1 353 | HNRNPH2 354 | HOOK3 355 | HOXB13 356 | HPCA 357 | HRG 358 | HSD11B1 359 | HSD17B10 360 | HSD17B3 361 | HSF2BP 362 | HSF4 363 | HSPB1 364 | HSPD1 365 | HSPG2 366 | HYLS1 367 | HYOU1 368 | ICK 369 | IDH1 370 | IER3IP1 371 | IFT43 372 | IGF2R 373 | IGFBP4 374 | IKZF1 375 | IKZF5 376 | IL17RD 377 | IL21 378 | IL31RA 379 | IL36RN 380 | IMPDH1 381 | INA 382 | INCENP 383 | ING1 384 | INO80 385 | INPP5B 386 | INPP5K 387 | INS 388 | INS-IGF2 389 | IRF1 390 | IRF2BP2 391 | ISCA1 392 | ITPR2 393 | ITSN1 394 | ITSN2 395 | JAK1 396 | JAK2 397 | JAKMIP1 398 | JAM3 399 | KAAG1 400 | KANK2 401 | KAT14 402 | KAT5 403 | KAT8 404 | KCNA1 405 | KCNA2 406 | KCNA4 407 | KCNAB2 408 | KCNC1 409 | KCND1 410 | KCND3 411 | KCNE3 412 | KCNH1 413 | KCNJ2 414 | KCNK17 415 | KCNK3 416 | KCNK4 417 | KCNK9 418 | KCNN3 419 | KCNN4 420 | KCNT2 421 | KCTD1 422 | KCTD19 423 | KDF1 424 | KDM2B 425 | KDM4B 426 | KHDRBS1 427 | KHK 428 | KIF23 429 | KIF3B 430 | KIF5B 431 | KIRREL 432 | KLF6 433 | KLHL10 434 | KLHL15 435 | KLHL20 436 | KLHL24 437 | KLHL3 438 | KLHL9 439 | KNSTRN 440 | KREMEN1 441 | KRT12 442 | KRT16 443 | KRT17 444 | KRT18 445 | KRT25 446 | KRT3 447 | KRT6A 448 | KRT71 449 | KRT86 450 | KRT9 451 | LACC1 452 | LAMA5 453 | LDLR 454 | LEMD2 455 | LFNG 456 | LHFPL5 457 | LHX4 458 | LIM2 459 | LINGO1 460 | LIPT2 461 | LITAF 462 | LMAN2L 463 | LMX1A 464 | LOC102724428 465 | LOC102724652 466 | LRP1 467 | LSS 468 | LURAP1L 469 | LYRM4 470 | LZTS1 471 | MAB21L2 472 | MACF1 473 | MAD2L2 474 | MAF 475 | MAFA 476 | MAP2K1 477 | MAP3K7 478 | MAP4K4 479 | MAPK1 480 | MAPK7 481 | MAPK8IP1 482 | MAPKAPK3 483 | MARK3 484 | MARS 485 | MAT1A 486 | MATN4 487 | MBL2 488 | MBTPS2 489 | MCC 490 | MDH1 491 | MECOM 492 | MED24 493 | MEIOB 494 | MEST 495 | MFSD2A 496 | MICALL2 497 | MID2 498 | MINPP1 499 | MLLT1 500 | MMP14 501 | MOG 502 | MPC1 503 | MPP4 504 | MR1 505 | MRI1 506 | MRPS14 507 | MRPS2 508 | MRPS23 509 | MRPS25 510 | MRPS28 511 | MSH5 512 | MSMO1 513 | MTA3 514 | MTHFS 515 | MTSS1L 516 | MVD 517 | MXRA8 518 | MYC 519 | MYH11 520 | MYH7 521 | MYL2 522 | MYL3 523 | MYLPF 524 | MYMK 525 | MYO9A 526 | MYOC 527 | MYOCD 528 | NAA10 529 | NACC1 530 | NCAPH 531 | NCF4 532 | NCKAP1L 533 | NCOR1 534 | NCOR2 535 | NDUFA13 536 | NDUFA8 537 | NDUFB10 538 | NDUFC2 539 | NDUFC2-KCTD14 540 | NDUFS3 541 | NDUFS8 542 | NECTIN3 543 | NEO1 544 | NEUROD2 545 | NFE2L2 546 | NHLRC2 547 | NIPA2 548 | NKAP 549 | NMNAT1 550 | NOL3 551 | NPAS2 552 | NR1D2 553 | NR1H3 554 | NR2F1 555 | NRAS 556 | NRG3 557 | NRXN3 558 | NSMCE3 559 | NTF4 560 | NTNG2 561 | NUF2 562 | NUP133 563 | NUP155 564 | NUP205 565 | NUP214 566 | NUP98 567 | OBFC1 568 | OGT 569 | OLFML2B 570 | OPCML 571 | OPN1MW 572 | OPN1MW2 573 | OPN1MW3 574 | OPN1SW 575 | OSGEP 576 | OSMR 577 | OTUD5 578 | OTUD7A 579 | P2RY12 580 | P2RY8 581 | P4HB 582 | PABPC1L 583 | PACS2 584 | PADI3 585 | PAK1 586 | PAM16 587 | PARD3 588 | PAX8 589 | PCGF2 590 | PCNA 591 | PDE10A 592 | PDE1C 593 | PDE3A 594 | PDE6B 595 | PDGFRL 596 | PDHA2 597 | PDHB 598 | PDIA3 599 | PDPR 600 | PDZRN3 601 | PER3 602 | PFN1 603 | PGAP2 604 | PGBD3 605 | PGK1 606 | PHACTR1 607 | PHF20 608 | PHOX2A 609 | PHYKPL 610 | PIAS1 611 | PIGB 612 | PIGH 613 | PIGM 614 | PIGU 615 | PIGV 616 | PIGY 617 | PIK3CA 618 | PIK3R5 619 | PIP5K1C 620 | PISD 621 | PLA2G4A 622 | PLCZ1 623 | PLEKHA5 624 | PLP1 625 | PLXNA2 626 | PMP2 627 | PMPCA 628 | PMPCB 629 | POLK 630 | POLR1B 631 | POLR2B 632 | POU6F2 633 | PPA2 634 | PPIP5K2 635 | PPP1CB 636 | PPP1R15B 637 | PPP2R1A 638 | PPP2R1B 639 | PPP2R3C 640 | PPP2R5C 641 | PPP2R5D 642 | PPP6C 643 | PRDM12 644 | PRDM15 645 | PRDM6 646 | PREX2 647 | PRIMPOL 648 | PRKACB 649 | PRKACG 650 | PRKAG3 651 | PRKCB 652 | PROC 653 | PRPF3 654 | PRPF4 655 | PRPF6 656 | PRPS1 657 | PSMB10 658 | PSMB9 659 | PSPH 660 | PTDSS1 661 | PTH2R 662 | PTPN12 663 | PTPN4 664 | PTPRU 665 | PUM1 666 | PVRL3 667 | PYGB 668 | QDPR 669 | RAB11B 670 | RAB7A 671 | RAC1 672 | RAC2 673 | RAC3 674 | RAD54B 675 | RAD54L 676 | RALA 677 | RALGAPB 678 | RARA 679 | RBM28 680 | RBM48 681 | RBPJ 682 | REEP2 683 | REPS1 684 | RFT1 685 | RHAG 686 | RHD 687 | RHEB 688 | RHOA 689 | RHOBTB2 690 | RIC1 691 | RLIM 692 | RNASEH2A 693 | RNF31 694 | RNF6 695 | ROCK1 696 | ROR1 697 | ROS1 698 | RPL10L 699 | RPL18 700 | RPL21 701 | RPS20 702 | RPS23 703 | RPS28 704 | RPS29 705 | RPS6KC1 706 | RPUSD3 707 | RQCD1 708 | RRAS2 709 | RSRC2 710 | RXRA 711 | SAMD9L 712 | SARS 713 | SASH1 714 | SC5D 715 | SCAMP5 716 | SCARB1 717 | SCD5 718 | SCN3B 719 | SCUBE2 720 | SEC23A 721 | SEC61A1 722 | SEMA3D 723 | SERPINA6 724 | SERPINA7 725 | SERPINH1 726 | SF3B1 727 | SF3B2 728 | SGCD 729 | SGK1 730 | SGO1 731 | SGOL1 732 | SHMT2 733 | SHOX 734 | SIK1 735 | SIK3 736 | SIX2 737 | SIX6 738 | SLC11A2 739 | SLC13A3 740 | SLC17A9 741 | SLC1A2 742 | SLC22A12 743 | SLC22A18 744 | SLC25A12 745 | SLC25A16 746 | SLC25A19 747 | SLC25A21 748 | SLC25A24 749 | SLC25A25 750 | SLC25A42 751 | SLC26A8 752 | SLC29A1 753 | SLC30A2 754 | SLC36A2 755 | SLC44A4 756 | SLC45A1 757 | SLC45A2 758 | SLC6A6 759 | SLC7A14 760 | SLC7A3 761 | SLC7A8 762 | SLC9A1 763 | SLC9A7 764 | SLFN14 765 | SLITRK5 766 | SLTM 767 | SMARCA5 768 | SMS 769 | SNAP25 770 | SNAPIN 771 | SNCA 772 | SNCB 773 | SNIP1 774 | SNRPE 775 | SOD1 776 | SOD3 777 | SOX4 778 | SP7 779 | SPAG17 780 | SPARC 781 | SPECC1L 782 | SPOP 783 | SPRY4 784 | SPTLC3 785 | SRGAP1 786 | SRGAP2 787 | SRP54 788 | SRPRA 789 | SRPX 790 | SRSF2 791 | SSBP1 792 | STAC2 793 | STAP1 794 | STAT1 795 | STK19 796 | STK33 797 | STN1 798 | STS 799 | STT3A 800 | STX7 801 | SVIL 802 | SYT1 803 | TAF13 804 | TAF2 805 | TARDBP 806 | TAX1BP3 807 | TBATA 808 | TBCE 809 | TBL1Y 810 | TBRG1 811 | TBX2 812 | TBXA2R 813 | TCEB1 814 | TCF3 815 | TDRKH 816 | TEAD1 817 | TECR 818 | TELO2 819 | TEX11 820 | TFAM 821 | TFAP2A 822 | TGDS 823 | THAP11 824 | THBS1 825 | THG1L 826 | THOC2 827 | THRB 828 | TIMM50 829 | TIMP3 830 | TKFC 831 | TLL1 832 | TMEM106B 833 | TMEM132E 834 | TMEM138 835 | TMEM240 836 | TMEM47 837 | TMEM87B 838 | TMEM8C 839 | TNF 840 | TNFRSF13C 841 | TNNC1 842 | TOE1 843 | TOP1 844 | TOP2B 845 | TPR 846 | TPRKB 847 | TRAF7 848 | TRAPPC10 849 | TRAPPC2L 850 | TRAPPC3 851 | TRIM36 852 | TRIM44 853 | TRPC3 854 | TRPM3 855 | TSEN15 856 | TSR2 857 | TTBK1 858 | TTC1 859 | TTC26 860 | TTI1 861 | TTI2 862 | TTK 863 | TTN 864 | TTR 865 | TUBA1A 866 | TUBA3E 867 | TUBA4A 868 | TUBB 869 | TUBB2A 870 | TUBB2B 871 | TUBB4B 872 | TUBB6 873 | TUBB8 874 | TUBG1 875 | TUFM 876 | TUT1 877 | U2AF1 878 | U2AF1L5 879 | UBE2T 880 | UBN1 881 | UBQLN2 882 | UBR4 883 | UFC1 884 | UFM1 885 | UFSP2 886 | UGDH 887 | UHMK1 888 | ULK2 889 | UNC119 890 | UNC45B 891 | UQCRC1 892 | UROC1 893 | USP11 894 | USP45 895 | UTP14C 896 | VARS 897 | VAX1 898 | VDR 899 | VKORC1 900 | VPS11 901 | VPS33A 902 | VPS4A 903 | VWA3B 904 | WARS 905 | WBP2 906 | WDFY3 907 | WDR11 908 | WDR37 909 | WDR6 910 | WDR93 911 | WIPI2 912 | WNT4 913 | WNT7A 914 | XPO1 915 | XPR1 916 | YWHAG 917 | YWHAZ 918 | ZBTB11 919 | ZBTB16 920 | ZBTB20 921 | ZBTB42 922 | ZFC3H1 923 | ZFHX2 924 | ZFP30 925 | ZFYVE16 926 | ZGRF1 927 | ZNF513 928 | ZNF644 929 | ZNF687 930 | ZNHIT3 931 | ZP3 932 | -------------------------------------------------------------------------------- /intervardb/PP2.genes.hg38: -------------------------------------------------------------------------------- 1 | AAR2 2 | ABL1 3 | ACER3 4 | ACO2 5 | ACOT4 6 | ACPT 7 | ACTA1 8 | ACTA2 9 | ACTB 10 | ACTC1 11 | ACTG1 12 | ACTG2 13 | ACTL6A 14 | ACTL6B 15 | ACTN1 16 | ACVR2B 17 | ADAMTS3 18 | ADCY6 19 | ADGRB2 20 | ADGRB3 21 | ADGRE2 22 | ADIPOQ 23 | ADK 24 | AFF3 25 | AGBL5 26 | AGO2 27 | AGPS 28 | AGRP 29 | AHSG 30 | AKR1C2 31 | AKT1 32 | AKT2 33 | AKT3 34 | ALAD 35 | ALDH1A3 36 | ALDH2 37 | ALDOA 38 | AMOT 39 | AMOTL1 40 | AMPD1 41 | ANGPT1 42 | ANLN 43 | ANO3 44 | ANXA11 45 | AP1G2 46 | AP2M1 47 | AP2S1 48 | APCDD1 49 | APOH 50 | AQP1 51 | AQP4 52 | AQP5 53 | ARAF 54 | ARF1 55 | ARHGAP21 56 | ARHGAP26 57 | ARHGEF10L 58 | ARL14EP 59 | ARL16 60 | ARL2 61 | ARL3 62 | ARPC1B 63 | ARSG 64 | ASH2L 65 | ASIC5 66 | ASPRV1 67 | ASTN1 68 | ATCAY 69 | ATG5 70 | ATP11C 71 | ATP1A1 72 | ATP1A3 73 | ATP2B2 74 | ATP5D 75 | ATP5E 76 | ATP6AP1 77 | ATP6V0A1 78 | ATP6V1A 79 | ATP6V1E1 80 | AURKA 81 | AVP 82 | B2M 83 | B3GNT6 84 | BANF1 85 | BAZ1A 86 | BCL2L12 87 | BCO1 88 | BMP1 89 | BMP6 90 | BMS1 91 | BRD4 92 | BRDT 93 | BRF1 94 | BRWD1 95 | C15orf41 96 | C1QBP 97 | C1QTNF5 98 | CA1 99 | CACNA1B 100 | CACNA1C 101 | CACNA1E 102 | CACNA1G 103 | CACNB4 104 | CACNG7 105 | CALHM1 106 | CALM1 107 | CALM3 108 | CAMK2G 109 | CAPN14 110 | CAPZA2 111 | CARNMT1 112 | CASQ1 113 | CAV3 114 | CBX2 115 | CCDC115 116 | CCNK 117 | CCT7 118 | CD207 119 | CD3EAP 120 | CDC42 121 | CDC45 122 | CDH2 123 | CDH4 124 | CDK12 125 | CDK13 126 | CDK19 127 | CDK4 128 | CDK8 129 | CDKL5 130 | CDKN2C 131 | CEP76 132 | CEP97 133 | CERS1 134 | CFAP47 135 | CFHR3 136 | CHAF1B 137 | CHCHD2 138 | CHD1 139 | CHD4 140 | CHMP4B 141 | CHN1 142 | CHRNA1 143 | CHRNE 144 | CHST8 145 | CIB2 146 | CISD2 147 | CKM 148 | CLCC1 149 | CLCN3 150 | CLCN4 151 | CLCN7 152 | CLDN10 153 | CLDN2 154 | CLGN 155 | CLHC1 156 | CLIC4 157 | CLPP 158 | CLPX 159 | CLRN2 160 | CNOT9 161 | CNP 162 | CNPY3-GNMT 163 | COA5 164 | COCH 165 | COPB2 166 | COQ6 167 | CORIN 168 | CORO7-PAM16 169 | COX6A2 170 | COX6B1 171 | CPZ 172 | CRADD 173 | CRAT 174 | CRLF2 175 | CRNKL1 176 | CRYAA 177 | CRYBB2 178 | CRYGA 179 | CSNK1D 180 | CSRP2BP 181 | CST3 182 | CTBP1 183 | CTHRC1 184 | CUX2 185 | CYBA 186 | CYCS 187 | CYFIP2 188 | CYP2C9 189 | CYP2R1 190 | DARS 191 | DCAF6 192 | DCAF8 193 | DCDC2 194 | DCPS 195 | DDX39A 196 | DDX54 197 | DDX59 198 | DDX6 199 | DENND4B 200 | DHCR24 201 | DHDDS 202 | DHFR 203 | DHODH 204 | DHX30 205 | DHX37 206 | DHX38 207 | DIS3 208 | DKC1 209 | DLC1 210 | DLST 211 | DMBX1 212 | DMRT1 213 | DNAJB5 214 | DNAJC13 215 | DNAJC30 216 | DPAGT1 217 | DPM3 218 | DPT 219 | DPYSL2 220 | DSCAML1 221 | DUSP6 222 | ECHS1 223 | EDC3 224 | EDEM3 225 | EDNRA 226 | EED 227 | EFL1 228 | EFTUD1 229 | EGFR 230 | EI24 231 | EIF1AX 232 | EIF2AK2 233 | EIF2B5 234 | EIF3F 235 | EIF4A3 236 | EIF5A 237 | ELF2 238 | ELOC 239 | ELOVL1 240 | ELOVL5 241 | EPB41L4A 242 | EPHA4 243 | EPHA5 244 | ERAL1 245 | ERBB3 246 | ERBB4 247 | ERCC5 248 | ERCC6-PGBD3 249 | ERGIC1 250 | ERLEC1 251 | ESR2 252 | EXOC4 253 | EXOSC2 254 | EXOSC8 255 | EZH2 256 | F2 257 | F7 258 | FADD 259 | FAM111A 260 | FAM120AOS 261 | FAM222A 262 | FANCI 263 | FARSA 264 | FASTKD1 265 | FBRS 266 | FBXW11 267 | FBXW7 268 | FDPS 269 | FGF12 270 | FGF17 271 | FGF18 272 | FGF23 273 | FGF9 274 | FGFR4 275 | FLI1 276 | FLT3 277 | FN1 278 | FOXE1 279 | FOXI1 280 | FSHR 281 | G6PD 282 | GAB1 283 | GABBR2 284 | GABRA2 285 | GAD1 286 | GAL3ST2 287 | GARNL3 288 | GART 289 | GATA4 290 | GATA5 291 | GATC 292 | GCGR 293 | GCLC 294 | GDF11 295 | GEMIN4 296 | GGCX 297 | GIGYF2 298 | GINS1 299 | GJA1 300 | GJA5 301 | GJB4 302 | GLE1 303 | GLUD2 304 | GLUL 305 | GNA11 306 | GNA14 307 | GNAI2 308 | GNAI3 309 | GNAO1 310 | GNB1 311 | GNB2 312 | GNMT 313 | GNRHR 314 | GP9 315 | GPD2 316 | GPI 317 | GPIHBP1 318 | GPR153 319 | GPR161 320 | GRAP 321 | GREM2 322 | GRIA2 323 | GRIA4 324 | GRID2 325 | GRK1 326 | GRM7 327 | GSPT2 328 | GSS 329 | GTF2E2 330 | GTF2IRD1 331 | GTF3C1 332 | GUCA1A 333 | H3F3A 334 | HBG2 335 | HCRT 336 | HDAC1 337 | HDAC3 338 | HECW2 339 | HELZ 340 | HGF 341 | HHAT 342 | HINT1 343 | HIST1H2AL 344 | HIST1H2AM 345 | HIST1H3A 346 | HIST1H3I 347 | HIVEP1 348 | HK1 349 | HMX1 350 | HNF4A 351 | HNRNPA2B1 352 | HNRNPH1 353 | HNRNPH2 354 | HOOK3 355 | HOXB13 356 | HPCA 357 | HRG 358 | HSD11B1 359 | HSD17B10 360 | HSD17B3 361 | HSF2BP 362 | HSF4 363 | HSPB1 364 | HSPD1 365 | HSPG2 366 | HYLS1 367 | HYOU1 368 | ICK 369 | IDH1 370 | IER3IP1 371 | IFT43 372 | IGF2R 373 | IGFBP4 374 | IKZF1 375 | IKZF5 376 | IL17RD 377 | IL21 378 | IL31RA 379 | IL36RN 380 | IMPDH1 381 | INA 382 | INCENP 383 | ING1 384 | INO80 385 | INPP5B 386 | INPP5K 387 | INS 388 | INS-IGF2 389 | IRF1 390 | IRF2BP2 391 | ISCA1 392 | ITPR2 393 | ITSN1 394 | ITSN2 395 | JAK1 396 | JAK2 397 | JAKMIP1 398 | JAM3 399 | KAAG1 400 | KANK2 401 | KAT14 402 | KAT5 403 | KAT8 404 | KCNA1 405 | KCNA2 406 | KCNA4 407 | KCNAB2 408 | KCNC1 409 | KCND1 410 | KCND3 411 | KCNE3 412 | KCNH1 413 | KCNJ2 414 | KCNK17 415 | KCNK3 416 | KCNK4 417 | KCNK9 418 | KCNN3 419 | KCNN4 420 | KCNT2 421 | KCTD1 422 | KCTD19 423 | KDF1 424 | KDM2B 425 | KDM4B 426 | KHDRBS1 427 | KHK 428 | KIF23 429 | KIF3B 430 | KIF5B 431 | KIRREL 432 | KLF6 433 | KLHL10 434 | KLHL15 435 | KLHL20 436 | KLHL24 437 | KLHL3 438 | KLHL9 439 | KNSTRN 440 | KREMEN1 441 | KRT12 442 | KRT16 443 | KRT17 444 | KRT18 445 | KRT25 446 | KRT3 447 | KRT6A 448 | KRT71 449 | KRT86 450 | KRT9 451 | LACC1 452 | LAMA5 453 | LDLR 454 | LEMD2 455 | LFNG 456 | LHFPL5 457 | LHX4 458 | LIM2 459 | LINGO1 460 | LIPT2 461 | LITAF 462 | LMAN2L 463 | LMX1A 464 | LOC102724428 465 | LOC102724652 466 | LRP1 467 | LSS 468 | LURAP1L 469 | LYRM4 470 | LZTS1 471 | MAB21L2 472 | MACF1 473 | MAD2L2 474 | MAF 475 | MAFA 476 | MAP2K1 477 | MAP3K7 478 | MAP4K4 479 | MAPK1 480 | MAPK7 481 | MAPK8IP1 482 | MAPKAPK3 483 | MARK3 484 | MARS 485 | MAT1A 486 | MATN4 487 | MBL2 488 | MBTPS2 489 | MCC 490 | MDH1 491 | MECOM 492 | MED24 493 | MEIOB 494 | MEST 495 | MFSD2A 496 | MICALL2 497 | MID2 498 | MINPP1 499 | MLLT1 500 | MMP14 501 | MOG 502 | MPC1 503 | MPP4 504 | MR1 505 | MRI1 506 | MRPS14 507 | MRPS2 508 | MRPS23 509 | MRPS25 510 | MRPS28 511 | MSH5 512 | MSMO1 513 | MTA3 514 | MTHFS 515 | MTSS1L 516 | MVD 517 | MXRA8 518 | MYC 519 | MYH11 520 | MYH7 521 | MYL2 522 | MYL3 523 | MYLPF 524 | MYMK 525 | MYO9A 526 | MYOC 527 | MYOCD 528 | NAA10 529 | NACC1 530 | NCAPH 531 | NCF4 532 | NCKAP1L 533 | NCOR1 534 | NCOR2 535 | NDUFA13 536 | NDUFA8 537 | NDUFB10 538 | NDUFC2 539 | NDUFC2-KCTD14 540 | NDUFS3 541 | NDUFS8 542 | NECTIN3 543 | NEO1 544 | NEUROD2 545 | NFE2L2 546 | NHLRC2 547 | NIPA2 548 | NKAP 549 | NMNAT1 550 | NOL3 551 | NPAS2 552 | NR1D2 553 | NR1H3 554 | NR2F1 555 | NRAS 556 | NRG3 557 | NRXN3 558 | NSMCE3 559 | NTF4 560 | NTNG2 561 | NUF2 562 | NUP133 563 | NUP155 564 | NUP205 565 | NUP214 566 | NUP98 567 | OBFC1 568 | OGT 569 | OLFML2B 570 | OPCML 571 | OPN1MW 572 | OPN1MW2 573 | OPN1MW3 574 | OPN1SW 575 | OSGEP 576 | OSMR 577 | OTUD5 578 | OTUD7A 579 | P2RY12 580 | P2RY8 581 | P4HB 582 | PABPC1L 583 | PACS2 584 | PADI3 585 | PAK1 586 | PAM16 587 | PARD3 588 | PAX8 589 | PCGF2 590 | PCNA 591 | PDE10A 592 | PDE1C 593 | PDE3A 594 | PDE6B 595 | PDGFRL 596 | PDHA2 597 | PDHB 598 | PDIA3 599 | PDPR 600 | PDZRN3 601 | PER3 602 | PFN1 603 | PGAP2 604 | PGBD3 605 | PGK1 606 | PHACTR1 607 | PHF20 608 | PHOX2A 609 | PHYKPL 610 | PIAS1 611 | PIGB 612 | PIGH 613 | PIGM 614 | PIGU 615 | PIGV 616 | PIGY 617 | PIK3CA 618 | PIK3R5 619 | PIP5K1C 620 | PISD 621 | PLA2G4A 622 | PLCZ1 623 | PLEKHA5 624 | PLP1 625 | PLXNA2 626 | PMP2 627 | PMPCA 628 | PMPCB 629 | POLK 630 | POLR1B 631 | POLR2B 632 | POU6F2 633 | PPA2 634 | PPIP5K2 635 | PPP1CB 636 | PPP1R15B 637 | PPP2R1A 638 | PPP2R1B 639 | PPP2R3C 640 | PPP2R5C 641 | PPP2R5D 642 | PPP6C 643 | PRDM12 644 | PRDM15 645 | PRDM6 646 | PREX2 647 | PRIMPOL 648 | PRKACB 649 | PRKACG 650 | PRKAG3 651 | PRKCB 652 | PROC 653 | PRPF3 654 | PRPF4 655 | PRPF6 656 | PRPS1 657 | PSMB10 658 | PSMB9 659 | PSPH 660 | PTDSS1 661 | PTH2R 662 | PTPN12 663 | PTPN4 664 | PTPRU 665 | PUM1 666 | PVRL3 667 | PYGB 668 | QDPR 669 | RAB11B 670 | RAB7A 671 | RAC1 672 | RAC2 673 | RAC3 674 | RAD54B 675 | RAD54L 676 | RALA 677 | RALGAPB 678 | RARA 679 | RBM28 680 | RBM48 681 | RBPJ 682 | REEP2 683 | REPS1 684 | RFT1 685 | RHAG 686 | RHD 687 | RHEB 688 | RHOA 689 | RHOBTB2 690 | RIC1 691 | RLIM 692 | RNASEH2A 693 | RNF31 694 | RNF6 695 | ROCK1 696 | ROR1 697 | ROS1 698 | RPL10L 699 | RPL18 700 | RPL21 701 | RPS20 702 | RPS23 703 | RPS28 704 | RPS29 705 | RPS6KC1 706 | RPUSD3 707 | RQCD1 708 | RRAS2 709 | RSRC2 710 | RXRA 711 | SAMD9L 712 | SARS 713 | SASH1 714 | SC5D 715 | SCAMP5 716 | SCARB1 717 | SCD5 718 | SCN3B 719 | SCUBE2 720 | SEC23A 721 | SEC61A1 722 | SEMA3D 723 | SERPINA6 724 | SERPINA7 725 | SERPINH1 726 | SF3B1 727 | SF3B2 728 | SGCD 729 | SGK1 730 | SGO1 731 | SGOL1 732 | SHMT2 733 | SHOX 734 | SIK1 735 | SIK3 736 | SIX2 737 | SIX6 738 | SLC11A2 739 | SLC13A3 740 | SLC17A9 741 | SLC1A2 742 | SLC22A12 743 | SLC22A18 744 | SLC25A12 745 | SLC25A16 746 | SLC25A19 747 | SLC25A21 748 | SLC25A24 749 | SLC25A25 750 | SLC25A42 751 | SLC26A8 752 | SLC29A1 753 | SLC30A2 754 | SLC36A2 755 | SLC44A4 756 | SLC45A1 757 | SLC45A2 758 | SLC6A6 759 | SLC7A14 760 | SLC7A3 761 | SLC7A8 762 | SLC9A1 763 | SLC9A7 764 | SLFN14 765 | SLITRK5 766 | SLTM 767 | SMARCA5 768 | SMS 769 | SNAP25 770 | SNAPIN 771 | SNCA 772 | SNCB 773 | SNIP1 774 | SNRPE 775 | SOD1 776 | SOD3 777 | SOX4 778 | SP7 779 | SPAG17 780 | SPARC 781 | SPECC1L 782 | SPOP 783 | SPRY4 784 | SPTLC3 785 | SRGAP1 786 | SRGAP2 787 | SRP54 788 | SRPRA 789 | SRPX 790 | SRSF2 791 | SSBP1 792 | STAC2 793 | STAP1 794 | STAT1 795 | STK19 796 | STK33 797 | STN1 798 | STS 799 | STT3A 800 | STX7 801 | SVIL 802 | SYT1 803 | TAF13 804 | TAF2 805 | TARDBP 806 | TAX1BP3 807 | TBATA 808 | TBCE 809 | TBL1Y 810 | TBRG1 811 | TBX2 812 | TBXA2R 813 | TCEB1 814 | TCF3 815 | TDRKH 816 | TEAD1 817 | TECR 818 | TELO2 819 | TEX11 820 | TFAM 821 | TFAP2A 822 | TGDS 823 | THAP11 824 | THBS1 825 | THG1L 826 | THOC2 827 | THRB 828 | TIMM50 829 | TIMP3 830 | TKFC 831 | TLL1 832 | TMEM106B 833 | TMEM132E 834 | TMEM138 835 | TMEM240 836 | TMEM47 837 | TMEM87B 838 | TMEM8C 839 | TNF 840 | TNFRSF13C 841 | TNNC1 842 | TOE1 843 | TOP1 844 | TOP2B 845 | TPR 846 | TPRKB 847 | TRAF7 848 | TRAPPC10 849 | TRAPPC2L 850 | TRAPPC3 851 | TRIM36 852 | TRIM44 853 | TRPC3 854 | TRPM3 855 | TSEN15 856 | TSR2 857 | TTBK1 858 | TTC1 859 | TTC26 860 | TTI1 861 | TTI2 862 | TTK 863 | TTN 864 | TTR 865 | TUBA1A 866 | TUBA3E 867 | TUBA4A 868 | TUBB 869 | TUBB2A 870 | TUBB2B 871 | TUBB4B 872 | TUBB6 873 | TUBB8 874 | TUBG1 875 | TUFM 876 | TUT1 877 | U2AF1 878 | U2AF1L5 879 | UBE2T 880 | UBN1 881 | UBQLN2 882 | UBR4 883 | UFC1 884 | UFM1 885 | UFSP2 886 | UGDH 887 | UHMK1 888 | ULK2 889 | UNC119 890 | UNC45B 891 | UQCRC1 892 | UROC1 893 | USP11 894 | USP45 895 | UTP14C 896 | VARS 897 | VAX1 898 | VDR 899 | VKORC1 900 | VPS11 901 | VPS33A 902 | VPS4A 903 | VWA3B 904 | WARS 905 | WBP2 906 | WDFY3 907 | WDR11 908 | WDR37 909 | WDR6 910 | WDR93 911 | WIPI2 912 | WNT4 913 | WNT7A 914 | XPO1 915 | XPR1 916 | YWHAG 917 | YWHAZ 918 | ZBTB11 919 | ZBTB16 920 | ZBTB20 921 | ZBTB42 922 | ZFC3H1 923 | ZFHX2 924 | ZFP30 925 | ZFYVE16 926 | ZGRF1 927 | ZNF513 928 | ZNF644 929 | ZNF687 930 | ZNHIT3 931 | ZP3 932 | -------------------------------------------------------------------------------- /intervardb/PS4.variants.hg19: -------------------------------------------------------------------------------- 1 | CHR POS_hg19 SNPID REF ALT 2 | 1 2068906 rs3128296 G T 3 | 1 3285628 rs6424073 G A 4 | 1 9408959 rs11121380 A C 5 | 1 15792426 rs2901964 C G 6 | 1 18294487 rs16861326 G A 7 | 1 25193155 rs3131513 G A 8 | 1 29429004 rs12045777 C T 9 | 1 30278550 rs10914475 C T 10 | 1 40433771 rs3103778 A G 11 | 1 44117006 rs660899 G T 12 | 1 53913080 rs9436924 C T 13 | 1 53937177 rs1296438 A G 14 | 1 53937177 rs1296438 A G 15 | 1 53958603 rs1298637 C T 16 | 1 53958603 rs1298637 C T 17 | 1 55404022 rs1889209 A G 18 | 1 55625548 rs17111684 C T 19 | 1 56112774 rs10443215 C T 20 | 1 63049593 rs1748195 C G 21 | 1 65992625 rs1751492 C T 22 | 1 66089782 rs6700896 C T 23 | 1 70335682 rs2226284 T C 24 | 1 70887099 rs672203 A G 25 | 1 70934259 rs8179319 G A 26 | 1 76106675 rs211718 T C 27 | 1 76839536 rs12144344 C T 28 | 1 76989264 rs315087 T C 29 | 1 90875888 rs2136093 T C 30 | 1 92003919 rs17501381 T C 31 | 1 92012481 rs17501512 G C 32 | 1 94674726 rs2274788 T C 33 | 1 95053353 rs12029080 T G 34 | 1 102726399 rs17126268 T C 35 | 1 102726802 rs7539242 G A 36 | 1 102726802 rs7539242 G A 37 | 1 102734951 rs12120258 G T 38 | 1 102739517 rs12140211 C T 39 | 1 106835943 rs1330225 T C 40 | 1 106835943 rs1330225 T C 41 | 1 107463643 rs12125971 C T 42 | 1 108302922 rs12142335 G A 43 | 1 108315137 rs4462178 C T 44 | 1 109818306 rs629301 G T 45 | 1 109818306 rs629301 G T 46 | 1 109822166 rs599839 G A 47 | 1 109822166 rs599839 G A 48 | 1 109822166 rs599839 G A 49 | 1 112416363 rs2788612 T C 50 | 1 114677948 rs529989 C A 51 | 1 117469781 rs2806864 C G 52 | 1 145586048 rs17352344 T C 53 | 1 145727683 rs1797052 C T 54 | 1 147020456 rs594206 A C 55 | 1 147020456 rs594206 A G 56 | 1 147020456 rs594206 A T 57 | 1 149892872 rs11205277 A G 58 | 1 150278389 rs12403795 C T 59 | 1 152083325 rs11803731 A T 60 | 1 152537954 rs10888501 G A 61 | 1 153769400 rs9426935 C T 62 | 1 153848996 rs7414227 G A 63 | 1 153913770 rs2252508 A G 64 | 1 153939130 rs11264736 C T 65 | 1 154340789 rs12025518 A C 66 | 1 154401679 rs2228144 G A 67 | 1 154418879 rs4537545 C T 68 | 1 154426970 rs2228145 A C 69 | 1 154426970 rs2228145 A G 70 | 1 154426970 rs2228145 A T 71 | 1 159272060 rs2251746 T C 72 | 1 159698549 rs7553007 G A 73 | 1 162085685 rs10494366 G T 74 | 1 165032101 rs12049436 T C 75 | 1 165448157 rs10918196 T C 76 | 1 169477574 rs6687813 A C 77 | 1 169563951 rs6136 T G 78 | 1 169580290 rs2235302 C T 79 | 1 170126741 rs16863069 A C 80 | 1 171091875 rs1795240 A G 81 | 1 172189889 rs678962 T G 82 | 1 182021283 rs7554182 C T 83 | 1 183837032 rs4651156 A G 84 | 1 184020945 rs2274432 G A 85 | 1 185794883 rs13375391 G A 86 | 1 194591753 rs13376197 T C 87 | 1 195836268 rs12140768 T C 88 | 1 202469723 rs12734338 T C 89 | 1 208128722 rs2745967 G A 90 | 1 221617076 rs12032381 A C 91 | 1 230209790 rs6684432 T C 92 | 1 233719984 rs11800854 G A 93 | 1 233719984 rs11800854 G A 94 | 1 233893329 rs6687540 G C 95 | 1 240283736 rs11810574 A G 96 | 1 241892235 rs9782914 T C 97 | 1 241894086 rs10926554 C A 98 | 1 241894086 rs10926554 C A 99 | 1 244167801 rs12127679 C T 100 | 1 245703990 rs9919234 G T 101 | 2 644953 rs7561317 A G 102 | 2 644953 rs7561317 A G 103 | 2 663483 rs12999373 G A 104 | 2 1228487 rs6548209 T G 105 | 2 1231315 rs10192365 A G 106 | 2 1437988 rs1514687 T G 107 | 2 18422013 rs12710680 A G 108 | 2 21225281 rs1042034 C T 109 | 2 21231524 rs676210 G A 110 | 2 21577743 rs219553 G A 111 | 2 25276284 rs6733301 G A 112 | 2 27730940 rs1260326 T C 113 | 2 27741237 rs780094 T C 114 | 2 27742603 rs780093 T C 115 | 2 38277832 rs6741148 T G 116 | 2 39947721 rs2716734 C T 117 | 2 44073656 rs41360247 T C 118 | 2 44074431 rs4245791 C T 119 | 2 44074431 rs4245791 C T 120 | 2 45216585 rs6705604 G A 121 | 2 47240012 rs10194115 G T 122 | 2 49201328 rs2268363 A G 123 | 2 49491810 rs10495970 G A 124 | 2 49498006 rs9636436 G A 125 | 2 55220584 rs17046570 C T 126 | 2 55956223 rs4672066 A G 127 | 2 55987857 rs4672069 C G 128 | 2 55988293 rs4233963 T C 129 | 2 55988681 rs11694759 T G 130 | 2 55988948 rs11887339 A G 131 | 2 55992905 rs1961386 A G 132 | 2 55994818 rs934274 A G 133 | 2 55994856 rs934275 T C 134 | 2 55996787 rs11693187 G A 135 | 2 55996959 rs11676678 T A 136 | 2 55997646 rs13404193 A G 137 | 2 55997871 rs11694790 C T 138 | 2 55998008 rs934276 T C 139 | 2 55998173 rs934277 C T 140 | 2 55998590 rs12614845 T C 141 | 2 55998850 rs11684982 A T 142 | 2 56000183 rs4671259 A G 143 | 2 56002372 rs7560508 C T 144 | 2 56002404 rs1430198 G A 145 | 2 56002685 rs1430199 G A 146 | 2 56002923 rs1430200 T C 147 | 2 56003053 rs9309269 G A 148 | 2 56003988 rs6742316 A T 149 | 2 56004139 rs6723918 A G 150 | 2 56009670 rs11125600 C G 151 | 2 56010084 rs9309270 T C 152 | 2 56010606 rs77406423 A C 153 | 2 56020185 rs7602081 T C 154 | 2 56033427 rs1430191 C T 155 | 2 56037076 rs1346781 C T 156 | 2 56052485 rs11903784 G T 157 | 2 56054052 rs1594308 T G 158 | 2 56054216 rs6733730 G C 159 | 2 56055436 rs6545526 T G 160 | 2 56059152 rs143080645 T C 161 | 2 56060659 rs57692404 C T 162 | 2 56061295 rs543949007 CT C 163 | 2 56061295 rs7609520 C T 164 | 2 56063907 rs148288741 A T 165 | 2 56065354 rs116371971 C G 166 | 2 56069405 rs1430201 T A 167 | 2 56070352 rs934278 G A 168 | 2 56073809 rs6545527 T C 169 | 2 56074525 rs6743114 A G 170 | 2 56078417 rs7607070 A T 171 | 2 56078555 rs116212307 G A 172 | 2 56089540 rs1367226 A G 173 | 2 56090113 rs11125607 T A 174 | 2 56090337 rs17047272 A G 175 | 2 56092612 rs1346787 C T 176 | 2 56094394 rs77784128 G A 177 | 2 56096892 rs3791679 A G 178 | 2 56099672 rs75943405 G A 179 | 2 56100846 rs17047277 C G 180 | 2 56102552 rs17047281 T C 181 | 2 56107760 rs75915915 C T 182 | 2 56107904 rs74968080 A G 183 | 2 56107976 rs78077363 C T 184 | 2 56112168 rs17047300 G A 185 | 2 56113746 rs75000414 C T 186 | 2 56115859 rs10496055 G A 187 | 2 56120853 rs1430193 A T 188 | 2 56158646 rs2868440 C T 189 | 2 56163875 rs7563487 C T 190 | 2 56166830 rs12617071 T G 191 | 2 56182118 rs11694304 G C 192 | 2 56182666 rs72811742 C T 193 | 2 56183651 rs6749890 C G 194 | 2 56183856 rs17279016 C T 195 | 2 56184748 rs2163714 C A 196 | 2 56186182 rs1432562 G A 197 | 2 56186525 rs1465684 C A 198 | 2 56195696 rs62164511 A G 199 | 2 56261491 rs10469875 G C 200 | 2 60718043 rs1427407 T G 201 | 2 64364632 rs6733160 T C 202 | 2 64503895 rs2698530 A C 203 | 2 64503895 rs2698530 A C 204 | 2 64503895 rs2698530 A C 205 | 2 69723710 rs7577851 C T 206 | 2 75790489 rs17011455 T C 207 | 2 79183413 rs12986641 T C 208 | 2 79183516 rs12986856 T C 209 | 2 79184629 rs17692905 C T 210 | 2 79185415 rs13000084 C A 211 | 2 79185685 rs17692957 C T 212 | 2 79185904 rs13001435 G T 213 | 2 79186313 rs13007327 G A 214 | 2 79186563 rs13007459 C A 215 | 2 79186758 rs34474458 C T 216 | 2 79186785 rs13008392 G A 217 | 2 79187128 rs35919794 A T 218 | 2 79187137 rs36072286 T C 219 | 2 79187151 rs35743083 T C 220 | 2 79187381 rs11674703 T C 221 | 2 79187457 rs13014457 C T 222 | 2 79187489 rs11679961 A C 223 | 2 79187502 rs11691084 C T 224 | 2 79187588 rs11691141 C G 225 | 2 79188272 rs71424840 T C 226 | 2 79190060 rs11683300 A G 227 | 2 79190073 rs11695755 C T 228 | 2 79190517 rs11679452 T C 229 | 2 79191129 rs55857353 C T 230 | 2 79193163 rs35119416 T G 231 | 2 79194668 rs11693972 C G 232 | 2 79201918 rs34611177 A T 233 | 2 79213468 rs17749826 G A 234 | 2 79214891 rs10520222 C T 235 | 2 79215748 rs11676773 A G 236 | 2 79216796 rs13008188 G A 237 | 2 79219390 rs11694350 G A 238 | 2 86135154 rs2679722 G A 239 | 2 86145787 rs7593080 C T 240 | 2 86153855 rs2164878 C T 241 | 2 86155271 rs6547647 C T 242 | 2 86160562 rs7576135 C T 243 | 2 86169989 rs2366958 T C 244 | 2 86466549 rs13017143 T C 245 | 2 86516984 rs13023154 G A 246 | 2 102576839 rs191222274 G A 247 | 2 102957716 rs1420101 C T 248 | 2 103512292 rs13402330 T A 249 | 2 105877870 rs17636747 C T 250 | 2 106457291 rs2377339 A G 251 | 2 112655242 rs6736093 A G 252 | 2 112665677 rs17779482 C T 253 | 2 112793981 rs11684476 T C 254 | 2 112816236 rs4848979 G T 255 | 2 113663873 rs2708973 A G 256 | 2 114489252 rs3762491 G A 257 | 2 123126479 rs10496584 A G 258 | 2 123127789 rs2037892 G A 259 | 2 123136890 rs1919922 C T 260 | 2 123141545 rs4848768 A G 261 | 2 123291022 rs1527243 C T 262 | 2 125281910 rs17727261 C T 263 | 2 127330954 rs1550404 T G 264 | 2 130468366 rs10928927 C T 265 | 2 134437959 rs1901440 C A 266 | 2 134442532 rs6430443 A G 267 | 2 135498924 rs1942055 G C 268 | 2 141795620 rs10210358 A G 269 | 2 142578483 rs6429923 T C 270 | 2 148318521 rs12464146 T C 271 | 2 162910223 rs6741949 G C 272 | 2 168784354 rs11894600 C A 273 | 2 211060050 rs2286963 T G 274 | 2 213824045 rs12619285 A G 275 | 2 215341890 rs7604827 C T 276 | 2 216838699 rs3770535 T C 277 | 2 218512598 rs6733585 A G 278 | 2 219130514 rs1079204 G A 279 | 2 219934348 rs1052483 G T 280 | 2 223872737 rs1371647 G A 281 | 2 231230171 rs6712333 C T 282 | 2 231230171 rs6712333 C T 283 | 2 232796610 rs749052 T C 284 | 2 233900089 rs11695991 A C 285 | 2 234516714 rs2741023 G A 286 | 2 234516714 rs2741023 G A 287 | 2 234530160 rs2741029 T G 288 | 2 234548814 rs2741034 A G 289 | 2 234548814 rs2741034 A G 290 | 2 234580140 rs2741045 C T 291 | 2 234589190 rs10197460 G T 292 | 2 234595747 rs6736508 G A 293 | 2 234598991 rs7563561 T G 294 | 2 234599089 rs7608175 C G 295 | 2 234601669 rs6759892 T G 296 | 2 234602191 rs2070959 A G 297 | 2 234602202 rs1105879 A C 298 | 2 234625297 rs6744284 C T 299 | 2 234639310 rs11891311 G A 300 | 2 234650604 rs4663965 T C 301 | 2 234667582 rs3755319 A C 302 | 2 234668570 rs887829 C T 303 | 2 234672639 rs6742078 G T 304 | 2 234673309 rs4148325 C T 305 | 2 234852692 rs12472151 G A 306 | 2 234855354 rs12992084 T C 307 | 2 234927260 rs11901004 G T 308 | 2 234929686 rs17866592 T C 309 | 2 238906315 rs9751676 G C 310 | 2 240900121 rs13424612 C T 311 | 3 416943 rs3773383 G A 312 | 3 2846316 rs975334 G A 313 | 3 2895684 rs11713158 T C 314 | 3 3147981 rs17879755 G A 315 | 3 6255997 rs6774280 T C 316 | 3 11615207 rs2574706 T C 317 | 3 12330411 rs17036170 G A 318 | 3 15150797 rs9867224 A G 319 | 3 23904762 rs28405582 T C 320 | 3 24221947 rs2683540 G T 321 | 3 24813614 rs11129165 C T 322 | 3 31067452 rs294314 C T 323 | 3 32155048 rs17028885 C T 324 | 3 33126972 rs73043340 C T 325 | 3 37855114 rs11129773 C T 326 | 3 38589163 rs11129795 G A 327 | 3 38593393 rs12053903 T C 328 | 3 38624253 rs3922844 T C 329 | 3 38766675 rs6795970 A G 330 | 3 38766675 rs6795970 A G 331 | 3 38779189 rs6776034 T A 332 | 3 38779189 rs6776034 T A 333 | 3 42226151 rs4234445 T C 334 | 3 45284315 rs33773 G A 335 | 3 45290007 rs28288 G A 336 | 3 45300605 rs33794 A G 337 | 3 50132131 rs2624834 G T 338 | 3 53680124 rs1401492 C T 339 | 3 53680124 rs1401492 C T 340 | 3 56849749 rs1354034 T C 341 | 3 56849749 rs1354034 T C 342 | 3 56849749 rs1354034 T C 343 | 3 56849749 rs1354034 T C 344 | 3 56849749 rs1354034 T C 345 | 3 60465279 rs1447971 G A 346 | 3 60691605 rs1735460 T C 347 | 3 65486388 rs1524976 A G 348 | 3 66445601 rs9827908 A G 349 | 3 88872504 rs1384771 G A 350 | 3 98034526 rs1497546 G A 351 | 3 121084467 rs11707293 C T 352 | 3 128260550 rs4857855 C T 353 | 3 130137471 rs1542829 G A 354 | 3 133484029 rs3811647 G A 355 | 3 133484029 rs3811647 G A 356 | 3 133484029 rs3811647 G A 357 | 3 133844946 rs6800143 G A 358 | 3 133941320 rs1131262 C T 359 | 3 133957265 rs9856298 A G 360 | 3 138675066 rs7626152 T C 361 | 3 138716500 rs2348394 A T 362 | 3 138861711 rs13101018 T C 363 | 3 138867882 rs11915859 T A 364 | 3 141102833 rs6763931 G A 365 | 3 156797609 rs17451107 T C 366 | 3 156797609 rs17451107 T C 367 | 3 156797609 rs17451107 T C 368 | 3 156797609 rs17451107 T C 369 | 3 156797648 rs10049088 C T 370 | 3 156797648 rs10049088 C T 371 | 3 156797648 rs10049088 C T 372 | 3 156797648 rs10049088 C T 373 | 3 156798473 rs1482853 C A 374 | 3 156798473 rs1482853 C A 375 | 3 156798473 rs1482853 C A 376 | 3 156798473 rs1482853 C A 377 | 3 156798473 rs1482853 C A 378 | 3 156798473 rs1482853 C A 379 | 3 156798473 rs1482853 C A 380 | 3 156798473 rs1482853 C A 381 | 3 156798473 rs1482853 C A 382 | 3 156798473 rs1482853 C A 383 | 3 156798473 rs1482853 C A 384 | 3 156798775 rs900400 T C 385 | 3 156798775 rs900400 T C 386 | 3 156798775 rs900400 T C 387 | 3 156798775 rs900400 T C 388 | 3 161460016 rs16833312 C T 389 | 3 161841018 rs2175263 A T 390 | 3 167897821 rs2686586 T C 391 | 3 186213784 rs11918665 A G 392 | 3 186213784 rs11918665 A G 393 | 3 186220063 rs1868152 A G 394 | 3 186220063 rs1868152 A G 395 | 3 187456709 rs3733017 T G 396 | 3 189055932 rs142095888 A G 397 | 3 189900082 rs16865151 T C 398 | 3 191667777 rs7635839 G A 399 | 3 192772295 rs13068101 G A 400 | 4 1078187 rs1670533 G A 401 | 4 1095281 rs3796619 A G 402 | 4 4252956 rs2980098 A G 403 | 4 9926967 rs13129697 T G 404 | 4 9926967 rs13129697 T G 405 | 4 12970339 rs115432166 A G 406 | 4 15964863 rs4698433 G T 407 | 4 16022540 rs2677780 G A 408 | 4 16893893 rs1483012 G A 409 | 4 16908004 rs6819013 A G 410 | 4 18017730 rs6830062 T C 411 | 4 18128641 rs1503874 G A 412 | 4 18866169 rs6845621 G A 413 | 4 21261591 rs12642021 A G 414 | 4 24375833 rs17650401 C T 415 | 4 25403266 rs16877106 C T 416 | 4 27194071 rs13149020 C A 417 | 4 32962030 rs10033556 G A 418 | 4 34893855 rs17390445 A G 419 | 4 36076892 rs17493657 T C 420 | 4 48479718 rs1565217 T C 421 | 4 48495577 rs13114836 C G 422 | 4 72608115 rs705117 C T 423 | 4 72618334 rs7041 A C 424 | 4 73970464 rs6818964 C T 425 | 4 76416387 rs13137105 A G 426 | 4 76481730 rs17000647 C A 427 | 4 78136933 rs11937061 G T 428 | 4 78605369 rs958617 A G 429 | 4 81925707 rs11946008 T A 430 | 4 81943068 rs2868128 C T 431 | 4 81945383 rs17005024 A G 432 | 4 86651464 rs7660702 T C 433 | 4 88755828 rs7698623 T C 434 | 4 89039082 rs1481012 A G 435 | 4 89052323 rs2231142 G T 436 | 4 90186759 rs6532150 G A 437 | 4 100137494 rs6820368 T C 438 | 4 106619140 rs11727189 G T 439 | 4 111734136 rs3853444 T C 440 | 4 115287484 rs4521415 T C 441 | 4 117370706 rs114918764 C T 442 | 4 124051467 rs9999118 A G 443 | 4 129696221 rs1974942 A G 444 | 4 139490191 rs1349345 C G 445 | 4 139493398 rs1450439 A G 446 | 4 145574844 rs1812175 A G 447 | 4 146794621 rs4547811 T C 448 | 4 151101672 rs11947645 G A 449 | 4 152418466 rs17690873 G A 450 | 4 155488821 rs6056 C T 451 | 4 155514879 rs13109457 G A 452 | 4 159630817 rs8396 T C 453 | 4 163243053 rs4440177 G A 454 | 4 170569172 rs6857404 C T 455 | 4 182222727 rs17183114 G T 456 | 4 182609865 rs12641856 G A 457 | 4 184921299 rs12498735 C T 458 | 4 187148387 rs4253238 C T 459 | 5 1322087 rs401681 C T 460 | 5 1877280 rs4975709 A C 461 | 5 3576229 rs1867710 G A 462 | 5 8652870 rs200113 T C 463 | 5 14072057 rs163818 T C 464 | 5 21749348 rs12109285 T C 465 | 5 29249544 rs7717683 A G 466 | 5 29283857 rs75104673 T C 467 | 5 29313927 rs7444137 T C 468 | 5 36309097 rs16902947 A G 469 | 5 52193125 rs4074793 A G 470 | 5 57658416 rs26977 T G 471 | 5 57686575 rs375523 A G 472 | 5 57771087 rs6450476 A G 473 | 5 67194469 rs10940138 C T 474 | 5 73016810 rs16870743 A G 475 | 5 73276903 rs6894385 A C 476 | 5 73391725 rs10045219 C T 477 | 5 73397114 rs725144 G A 478 | 5 73423525 rs17555780 A G 479 | 5 73430161 rs4703622 A G 480 | 5 73432001 rs12517914 G A 481 | 5 73433080 rs10058853 A T 482 | 5 73437503 rs4704110 T C 483 | 5 73441848 rs392079 G C 484 | 5 73442438 rs2120729 G A 485 | 5 73450088 rs2926721 G A 486 | 5 73450695 rs2926720 G A 487 | 5 73461072 rs290725 T C 488 | 5 74625487 rs7703051 C A 489 | 5 76046939 rs17568628 T C 490 | 5 76224171 rs2460504 G C 491 | 5 76781471 rs163030 A C 492 | 5 77291940 rs12655917 G A 493 | 5 82309128 rs7736398 T C 494 | 5 88183651 rs17560407 A G 495 | 5 93810208 rs6869388 T C 496 | 5 95453623 rs73136503 A G 497 | 5 102764048 rs2099077 C A 498 | 5 107263580 rs11743737 T C 499 | 5 110435490 rs2416257 C T 500 | 5 113798986 rs17136627 C T 501 | 5 124365967 rs6862844 A C 502 | 5 126032964 rs1546498 C T 503 | 5 129000386 rs13436218 T G 504 | 5 131671662 rs12777 C G 505 | 5 131744574 rs1016988 T C 506 | 5 131862977 rs4143832 T G 507 | 5 131973177 rs2040704 A G 508 | 5 132495185 rs13178251 A G 509 | 5 132600339 rs6876130 T C 510 | 5 134573007 rs1346440 C T 511 | 5 134573992 rs2019973 C T 512 | 5 136572793 rs17779700 A G 513 | 5 145038831 rs10515552 T C 514 | 5 148312767 rs7729953 T C 515 | 5 149142067 rs9285640 G A 516 | 5 151712952 rs17113106 A G 517 | 5 163869843 rs6556752 C T 518 | 5 165377699 rs9313296 G C 519 | 5 165377699 rs9313296 G C 520 | 5 167500460 rs13358864 T A 521 | 5 168847968 rs13177680 A C 522 | 5 172292306 rs6890783 G A 523 | 6 2235633 rs9378688 G A 524 | 6 3837198 rs17318866 G A 525 | 6 4874759 rs73717741 C G 526 | 6 5897768 rs11243038 T C 527 | 6 5898375 rs12193326 A G 528 | 6 5902668 rs10155777 C G 529 | 6 5903994 rs7744130 G A 530 | 6 5904322 rs7769375 A G 531 | 6 5904791 rs10155695 T C 532 | 6 5910305 rs1001289 C T 533 | 6 5919702 rs12213320 A G 534 | 6 7720059 rs12198986 G A 535 | 6 7801112 rs6923462 T C 536 | 6 12197213 rs1040994 C A 537 | 6 16232556 rs114353847 A C 538 | 6 21279204 rs9368292 C G 539 | 6 21282089 rs9348464 A G 540 | 6 21286834 rs9466024 G A 541 | 6 23173613 rs7754121 G A 542 | 6 24721787 rs9379687 C A 543 | 6 25813150 rs1165196 G A 544 | 6 25821770 rs17342717 C T 545 | 6 26093141 rs1800562 G A 546 | 6 26093141 rs1800562 G A 547 | 6 26233387 rs10946808 A G 548 | 6 29913298 rs1061235 A T 549 | 6 30736151 rs12526186 C T 550 | 6 30795171 rs7772131 A C 551 | 6 30976219 rs28360974 G A 552 | 6 31058340 rs3130544 C A 553 | 6 31274380 rs9264942 T C 554 | 6 31322367 rs3819299 T G 555 | 6 31322367 rs3819299 T G 556 | 6 31431780 rs2395029 T G 557 | 6 31431780 rs2395029 T G 558 | 6 31431780 rs2395029 T G 559 | 6 31505480 rs2734583 A G 560 | 6 32050067 rs185819 T C 561 | 6 32305979 rs3129900 G T 562 | 6 32321554 rs2395148 G T 563 | 6 32586854 rs9271366 G A 564 | 6 32604372 rs9272346 G A 565 | 6 32605884 rs2187668 C T 566 | 6 32605884 rs2187668 C T 567 | 6 32667910 rs2647044 G A 568 | 6 33465482 rs9394152 C T 569 | 6 33540209 rs210134 A G 570 | 6 33540209 rs210134 A G 571 | 6 33541719 rs513349 A G 572 | 6 34195011 rs1776897 G T 573 | 6 35402785 rs4713858 A G 574 | 6 36622900 rs1321311 C A 575 | 6 38036420 rs17589516 A G 576 | 6 39304211 rs3734621 A C 577 | 6 39307032 rs9471075 A C 578 | 6 39307032 rs9471075 A C 579 | 6 46684222 rs1805017 C T 580 | 6 47882808 rs10807383 A G 581 | 6 51643014 rs728996 C T 582 | 6 67885919 rs9342616 A G 583 | 6 68314406 rs41388347 C T 584 | 6 73171594 rs1572208 T C 585 | 6 75843360 rs240727 G A 586 | 6 79556166 rs16890334 T C 587 | 6 79556166 rs16890334 T C 588 | 6 81302805 rs10943724 C A 589 | 6 95147902 rs9354118 C T 590 | 6 99782879 rs17059400 A C 591 | 6 104042691 rs6571130 A G 592 | 6 105407662 rs314277 A C 593 | 6 118574061 rs281868 G A 594 | 6 118618981 rs166881 T C 595 | 6 118680374 rs11970286 C T 596 | 6 121748542 rs11154022 A G 597 | 6 122114451 rs9320841 A G 598 | 6 122146034 rs9398652 C A 599 | 6 124681503 rs12204812 C A 600 | 6 124688755 rs911959 T C 601 | 6 126964510 rs4273712 A G 602 | 6 128194473 rs12194062 C T 603 | 6 130550063 rs10447419 C A 604 | 6 130962874 rs1532986 G T 605 | 6 130967588 rs9492683 A G 606 | 6 131256364 rs7769153 T G 607 | 6 131282210 rs6941712 T C 608 | 6 135419018 rs9399137 T C 609 | 6 135419018 rs9399137 T C 610 | 6 135419018 rs9399137 T C 611 | 6 135426573 rs4895441 A G 612 | 6 135432552 rs9494145 T C 613 | 6 137673302 rs6928289 G A 614 | 6 142512136 rs225675 A G 615 | 6 142767633 rs3748069 A G 616 | 6 149329267 rs2500535 A G 617 | 6 149329267 rs2500535 A G 618 | 6 155929801 rs35229355 C T 619 | 6 159340672 rs9365009 A C 620 | 6 161010118 rs10455872 A G 621 | 6 167358121 rs3734247 T C 622 | 6 170043646 rs9295020 A G 623 | 7 2763102 rs798544 C T 624 | 7 11282369 rs10440955 T C 625 | 7 11282387 rs4620184 C G 626 | 7 11285339 rs10950343 T G 627 | 7 12094966 rs1035147 A C 628 | 7 14445917 rs6971925 T C 629 | 7 15742786 rs10486776 G A 630 | 7 16326646 rs35681285 T C 631 | 7 28004198 rs4722750 C T 632 | 7 32340099 rs12531858 C A 633 | 7 32394878 rs12532023 G C 634 | 7 32397269 rs7791060 A G 635 | 7 41046625 rs6947406 A G 636 | 7 41622530 rs4724055 G T 637 | 7 52139899 rs10237629 A T 638 | 7 52158542 rs1986783 G A 639 | 7 67865802 rs73146440 A G 640 | 7 72129667 rs13238203 C T 641 | 7 72982874 rs17145738 C T 642 | 7 72982874 rs17145738 C T 643 | 7 73020337 rs3812316 C G 644 | 7 92264410 rs2282978 T C 645 | 7 92987445 rs2285505 T C 646 | 7 92988398 rs3735650 T G 647 | 7 97017795 rs10255878 G A 648 | 7 98483072 rs12155122 C T 649 | 7 99008395 rs17161726 C G 650 | 7 99014984 rs2003499 T C 651 | 7 99057701 rs2293256 G A 652 | 7 99171449 rs952319 C T 653 | 7 99229768 rs11734 G C 654 | 7 100453208 rs314370 T C 655 | 7 100486754 rs12666989 G C 656 | 7 100881403 rs3757458 G A 657 | 7 106594885 rs7779057 C T 658 | 7 109152711 rs10953615 A G 659 | 7 111677906 rs10428959 C T 660 | 7 116186241 rs3807989 A G 661 | 7 145185358 rs13222586 C T 662 | 7 147556653 rs13235812 A G 663 | 7 148914320 rs114143440 T C 664 | 7 150667210 rs3807375 C T 665 | 7 152878333 rs4285401 A G 666 | 7 154509324 rs12666280 T C 667 | 7 154934501 rs4146256 C A 668 | 7 155057997 rs4506162 A G 669 | 8 1244224 rs17669535 C G 670 | 8 3247408 rs147739031 A G 671 | 8 4078353 rs2407314 G C 672 | 8 4092133 rs17069667 T C 673 | 8 4110032 rs13259289 T C 674 | 8 4875172 rs10112481 G T 675 | 8 9152517 rs747751 A G 676 | 8 9257739 rs10099338 A G 677 | 8 10419303 rs7815294 G A 678 | 8 11404514 rs7820492 G A 679 | 8 11643915 rs804292 G A 680 | 8 11643915 rs804292 G A 681 | 8 12941709 rs1044011 C A 682 | 8 15665612 rs240657 G A 683 | 8 19819439 rs326 A G 684 | 8 19844222 rs12678919 A G 685 | 8 19847690 rs10503669 C A 686 | 8 20246758 rs17412740 G A 687 | 8 20263408 rs1016646 G A 688 | 8 20626321 rs2122469 G A 689 | 8 23169455 rs4278162 G A 690 | 8 23256092 rs4639518 G T 691 | 8 23286234 rs6557672 G A 692 | 8 23289536 rs7843529 G A 693 | 8 23304456 rs7822769 C A 694 | 8 23309914 rs562230222 G GA 695 | 8 23309914 rs6993786 G A 696 | 8 24799742 rs6557786 G A 697 | 8 28520558 rs189517 A G 698 | 8 36951914 rs2407103 A G 699 | 8 54166395 rs6989250 C G 700 | 8 54780174 rs6997050 C T 701 | 8 57095808 rs10958476 T C 702 | 8 65999963 rs2980003 C T 703 | 8 74156494 rs13248977 A G 704 | 8 75373948 rs16938910 C T 705 | 8 77737624 rs10957819 A G 706 | 8 90211100 rs2046315 A G 707 | 8 96396070 rs16917517 T C 708 | 8 99317739 rs11785622 C T 709 | 8 102375267 rs16867579 A C 710 | 8 115039038 rs6983475 G A 711 | 8 116813905 rs800586 G A 712 | 8 123881218 rs6470120 G A 713 | 8 126486409 rs17321515 A G 714 | 8 126490972 rs2954029 A T 715 | 8 129836728 rs6996572 C T 716 | 8 132510680 rs1395804 C T 717 | 8 139424363 rs4909788 C G 718 | 8 141574194 rs2944755 A G 719 | 9 1826401 rs10810919 C T 720 | 9 2203938 rs6475600 C T 721 | 9 3844061 rs717423 G A 722 | 9 4744743 rs409801 T C 723 | 9 4763176 rs385893 T C 724 | 9 4814948 rs13300663 G C 725 | 9 4834394 rs457287 A G 726 | 9 18769138 rs10963750 T A 727 | 9 20098711 rs16937883 A G 728 | 9 21748433 rs1414243 C G 729 | 9 21748962 rs2165409 G A 730 | 9 26694888 rs13294589 A G 731 | 9 32914589 rs12377462 C T 732 | 9 33283582 rs12336160 G T 733 | 9 37037976 rs1329568 T G 734 | 9 82971428 rs10735544 T C 735 | 9 82971893 rs1333940 A G 736 | 9 85135915 rs7043482 A C 737 | 9 89573083 rs9792548 G A 738 | 9 90811182 rs2814828 T C 739 | 9 97741274 rs3802458 A G 740 | 9 98079143 rs4647355 A G 741 | 9 98762901 rs10819695 C T 742 | 9 102234323 rs649057 C A 743 | 9 104867838 rs10989824 C T 744 | 9 109632353 rs4743034 G A 745 | 9 114303679 rs7873730 A T 746 | 9 119249339 rs7852872 C G 747 | 9 122868788 rs10984840 A G 748 | 9 124476013 rs35061590 G T 749 | 9 124487495 rs13290547 C T 750 | 9 124549642 rs10985375 C A 751 | 9 126695770 rs10818894 G A 752 | 9 128929023 rs888219 A C 753 | 9 131849036 rs7046961 C T 754 | 9 131960870 rs2417135 C T 755 | 9 136139265 rs657152 C A 756 | 9 136149399 rs507666 G A 757 | 9 136149399 rs507666 G C 758 | 9 136149399 rs507666 G T 759 | 9 136149399 rs507666 G A 760 | 9 136149399 rs507666 G C 761 | 9 136149399 rs507666 G T 762 | 9 136153875 rs651007 C T 763 | 9 136154168 rs579459 T C 764 | 9 136154168 rs579459 T C 765 | 10 2614863 rs4881003 T A 766 | 10 2619695 rs7920309 G A 767 | 10 2627161 rs2388288 A G 768 | 10 2635863 rs11251392 C T 769 | 10 2819460 rs7898310 C T 770 | 10 6103762 rs12722486 C T 771 | 10 7259446 rs2692840 C T 772 | 10 7265468 rs2692812 T C 773 | 10 7276215 rs10905124 G A 774 | 10 7280550 rs10905129 T C 775 | 10 12959026 rs281849 G T 776 | 10 17130693 rs11254363 A G 777 | 10 20810525 rs16920624 T G 778 | 10 21961864 rs16921893 C G 779 | 10 21961864 rs370104096 C CAG 780 | 10 23369421 rs722258 C T 781 | 10 26294828 rs16926523 G A 782 | 10 26734587 rs2992257 C T 783 | 10 44864168 rs266095 C T 784 | 10 51549496 rs10993994 T C 785 | 10 52010708 rs10508921 C T 786 | 10 54223977 rs1733724 A G 787 | 10 55407091 rs7077606 C T 788 | 10 56848985 rs16906916 A C 789 | 10 57098859 rs6481156 A T 790 | 10 58339241 rs1907926 T C 791 | 10 64963449 rs4379723 T C 792 | 10 65104500 rs7896518 A G 793 | 10 68598292 rs7902091 C A 794 | 10 72370724 rs10999432 T G 795 | 10 76831010 rs11001281 G A 796 | 10 76834982 rs11001286 C T 797 | 10 80031020 rs11002475 T C 798 | 10 80960828 rs2802369 C A 799 | 10 90592544 rs11202868 T G 800 | 10 91741437 rs10509586 G T 801 | 10 96792202 rs1934954 T C 802 | 10 96798548 rs1934951 C T 803 | 10 98913628 rs2784920 G T 804 | 10 100682448 rs11189867 T C 805 | 10 101930409 rs11595238 A G 806 | 10 102256197 rs9420790 G A 807 | 10 107460228 rs10509794 T C 808 | 10 107516352 rs17119461 T C 809 | 10 109358096 rs17122872 T C 810 | 10 112175889 rs7083193 T C 811 | 10 114923825 rs290481 C T 812 | 10 115285308 rs11592949 T G 813 | 10 119289027 rs149745931 G C 814 | 10 122582613 rs1254152 G A 815 | 10 123033549 rs10788160 G A 816 | 10 125585034 rs1219705 G A 817 | 10 125585163 rs1219704 G A 818 | 10 125599464 rs7900253 A G 819 | 10 125601148 rs2176488 G C 820 | 10 125608590 rs7920094 T C 821 | 10 125609811 rs6599627 T C 822 | 10 129353132 rs10734107 T G 823 | 10 130622295 rs11016498 A G 824 | 10 130622498 rs1555702 C T 825 | 10 130624838 rs942525 C T 826 | 10 131673986 rs9804200 C T 827 | 11 202856 rs11602954 G A 828 | 11 243268 rs505404 T G 829 | 11 1888955 rs11041553 G A 830 | 11 2484803 rs2074238 T C 831 | 11 2489342 rs12296050 C T 832 | 11 7696338 rs12292013 G T 833 | 11 11504228 rs7940423 G A 834 | 11 12110677 rs10831728 C T 835 | 11 12159661 rs1994318 C A 836 | 11 13996155 rs1819084 C A 837 | 11 19668438 rs714585 A G 838 | 11 20562519 rs7128311 C T 839 | 11 21565079 rs12279250 T C 840 | 11 21999145 rs11603377 A G 841 | 11 35123051 rs1559759 C A 842 | 11 35955713 rs12804535 C T 843 | 11 35957322 rs11033335 C T 844 | 11 41258331 rs10501252 T C 845 | 11 43648368 rs4237643 T G 846 | 11 44369477 rs3853291 G A 847 | 11 45250732 rs2863171 A C 848 | 11 47373425 rs2856656 T C 849 | 11 47389771 rs140541052 C G 850 | 11 47565138 rs77977823 T C 851 | 11 47574081 rs60206633 C G 852 | 11 47574081 rs60206633 C G 853 | 11 47764906 rs78261087 G A 854 | 11 47783614 rs150341456 T C 855 | 11 47818310 rs58883118 C T 856 | 11 47920993 rs141237278 G T 857 | 11 47947894 rs149327057 C T 858 | 11 48052066 rs117784795 C T 859 | 11 48064194 rs138315285 G A 860 | 11 55895745 rs2220004 G T 861 | 11 59224144 rs7943953 T G 862 | 11 59633493 rs526934 G A 863 | 11 59837192 rs2298585 C T 864 | 11 61570783 rs174547 T C 865 | 11 61570783 rs174547 T C 866 | 11 64334114 rs2078267 C T 867 | 11 74971557 rs17133858 G T 868 | 11 80377052 rs17140547 C T 869 | 11 81235150 rs2032381 G T 870 | 11 90364187 rs17257677 A G 871 | 11 102929443 rs7105967 C T 872 | 11 102947465 rs7947821 T C 873 | 11 102980594 rs12283022 A G 874 | 11 103127065 rs12294076 T C 875 | 11 110012143 rs689183 G T 876 | 11 116607437 rs1558861 C T 877 | 11 116648917 rs964184 G C 878 | 11 116652207 rs12286037 C T 879 | 11 116652207 rs12286037 C T 880 | 11 116732512 rs2075292 G T 881 | 11 118031986 rs11600901 G A 882 | 11 118117018 rs11216831 G A 883 | 11 119099906 rs4938642 G C 884 | 11 123976067 rs58908941 T G 885 | 12 1983782 rs758160 C T 886 | 12 3164923 rs12425451 C T 887 | 12 6546166 rs7958488 A T 888 | 12 7855271 rs12307997 G A 889 | 12 10356973 rs10845067 C G 890 | 12 10471050 rs12303914 A G 891 | 12 14919862 rs10846059 T C 892 | 12 20758613 rs11611208 G A 893 | 12 21377559 rs4149080 G C 894 | 12 24770878 rs17287293 A G 895 | 12 26689621 rs11048567 A G 896 | 12 40428561 rs1994090 G T 897 | 12 40465942 rs7304279 T C 898 | 12 40474147 rs4768212 C T 899 | 12 40478652 rs2708453 G T 900 | 12 40580440 rs2046932 G A 901 | 12 40620808 rs1491942 C G 902 | 12 40734202 rs34637584 G A 903 | 12 40734202 rs34637584 G A 904 | 12 54736470 rs4326844 A G 905 | 12 57809456 rs1106766 C T 906 | 12 65534624 rs6581612 C A 907 | 12 65718299 rs17178006 T G 908 | 12 66359752 rs8756 C A 909 | 12 70954464 rs17108344 C T 910 | 12 75925402 rs11610328 A G 911 | 12 75969345 rs2700521 A G 912 | 12 75991446 rs2054517 C A 913 | 12 76931246 rs73385569 C T 914 | 12 85153171 rs10779128 A G 915 | 12 93976954 rs3825199 A G 916 | 12 96057184 rs2367563 A G 917 | 12 99816842 rs7968606 C T 918 | 12 107879066 rs11113349 C T 919 | 12 107956249 rs182722816 G T 920 | 12 108767333 rs10861905 C A 921 | 12 111884608 rs3184504 T C 922 | 12 111884608 rs3184504 T C 923 | 12 112241766 rs671 G A 924 | 12 112977777 rs10850053 T C 925 | 12 114795443 rs3825214 G A 926 | 12 114795443 rs3825214 G A 927 | 12 114795443 rs3825214 G A 928 | 12 115094260 rs11067228 A G 929 | 12 116200160 rs780886 G A 930 | 12 117327592 rs7294919 T C 931 | 12 117327592 rs7294919 T C 932 | 12 118589862 rs795484 T C 933 | 12 118893248 rs11613092 C T 934 | 12 120051929 rs11064845 G C 935 | 12 120054073 rs7310536 G C 936 | 12 120106376 rs6490267 G T 937 | 12 120116494 rs278151 A G 938 | 12 120119183 rs4213 T G 939 | 12 120880434 rs17431357 C T 940 | 12 121175524 rs2014355 T C 941 | 12 121420807 rs1183910 G A 942 | 12 121424861 rs7310409 A G 943 | 12 126555279 rs17548327 C T 944 | 12 128762741 rs12302898 G A 945 | 12 128782022 rs11059635 C T 946 | 12 130230407 rs7979367 G T 947 | 12 131062900 rs8181764 C A 948 | 12 133417802 rs3741489 T C 949 | 12 133432744 rs2062162 C T 950 | 13 21043086 rs4573790 G A 951 | 13 21876096 rs9788333 C G 952 | 13 23922462 rs41360252 A G 953 | 13 27415673 rs9319321 A T 954 | 13 66613187 rs17837241 C A 955 | 13 74931841 rs1576704 A G 956 | 13 76857474 rs4286013 A G 957 | 13 76884327 rs2777732 G A 958 | 13 85617558 rs1932913 T C 959 | 13 85619082 rs10459348 C T 960 | 13 93879031 rs7985891 A G 961 | 13 95453071 rs9561694 C T 962 | 13 97508739 rs16953622 C T 963 | 13 98700617 rs16954776 A G 964 | 13 100518634 rs41281112 C T 965 | 13 102680126 rs11617740 G A 966 | 13 104186919 rs16962638 A G 967 | 13 105701736 rs3935930 G A 968 | 13 105909261 rs9586776 G T 969 | 13 105925554 rs9558521 T C 970 | 13 107338801 rs1330950 C A 971 | 13 110818598 rs3742207 T G 972 | 14 21770681 rs17792599 A G 973 | 14 22806220 rs17793886 G C 974 | 14 22851141 rs11623006 T A 975 | 14 23861811 rs365990 A G 976 | 14 23865885 rs452036 G A 977 | 14 23865885 rs452036 G A 978 | 14 23977010 rs223116 A G 979 | 14 29031632 rs2093075 G C 980 | 14 31681227 rs6571396 G T 981 | 14 41752589 rs1622804 G A 982 | 14 41752669 rs1782156 T A 983 | 14 41753964 rs1779516 A G 984 | 14 41773741 rs17678541 T C 985 | 14 41788077 rs1431032 G A 986 | 14 41817982 rs8011741 A G 987 | 14 42547019 rs1684696 G A 988 | 14 42584436 rs1684675 A C 989 | 14 42605529 rs10146319 A G 990 | 14 42671745 rs6572138 C G 991 | 14 44623260 rs10147827 A G 992 | 14 47874557 rs17118552 A G 993 | 14 55483786 rs28489712 A C 994 | 14 63356253 rs10136789 T C 995 | 14 63427259 rs4086351 C A 996 | 14 70502050 rs17175227 G A 997 | 14 71363031 rs2189807 G A 998 | 14 71383848 rs2810073 T C 999 | 14 71433911 rs2810098 A G 1000 | 14 71441524 rs17108804 C T 1001 | 14 71464384 rs8007026 G C 1002 | 14 71497794 rs2158997 G C 1003 | 14 71605268 rs221899 A G 1004 | 14 71707633 rs1000448 G A 1005 | 14 71709355 rs17109189 C A 1006 | 14 78421058 rs4899685 G A 1007 | 14 82337665 rs1959122 C T 1008 | 14 90044729 rs10142749 C A 1009 | 14 90396574 rs7147996 T A 1010 | 14 92427222 rs7153027 A C 1011 | 14 97171075 rs17244419 C T 1012 | 14 100625902 rs7157599 C T 1013 | 14 103572815 rs944002 A G 1014 | 15 26288394 rs6576507 T C 1015 | 15 26288394 rs6576507 T C 1016 | 15 28365618 rs12913832 A G 1017 | 15 28530182 rs1667394 C T 1018 | 15 28530182 rs1667394 C T 1019 | 15 31334362 rs17815774 C T 1020 | 15 36349846 rs1898036 T C 1021 | 15 39573535 rs12595668 A G 1022 | 15 39576560 rs746265 A C 1023 | 15 41871492 rs12259 A G 1024 | 15 42683787 rs2412710 G A 1025 | 15 44245931 rs2929282 A T 1026 | 15 45500047 rs765787 A G 1027 | 15 48392165 rs1834640 A G 1028 | 15 49415696 rs16962067 T C 1029 | 15 49534702 rs16962177 T C 1030 | 15 49563046 rs16962244 A G 1031 | 15 49568617 rs16962257 A T 1032 | 15 51513729 rs6493487 G A 1033 | 15 51545454 rs12907866 A G 1034 | 15 53279378 rs719714 A G 1035 | 15 54722335 rs17237606 A G 1036 | 15 55950082 rs11071200 C A 1037 | 15 60937402 rs339978 C T 1038 | 15 70150451 rs379468 T G 1039 | 15 70596974 rs2916179 C G 1040 | 15 71424009 rs12904863 T C 1041 | 15 74176557 rs16958445 G A 1042 | 15 74219582 rs3825942 G A 1043 | 15 74221298 rs1550437 C T 1044 | 15 74223767 rs1992314 C G 1045 | 15 74227140 rs12594472 A T 1046 | 15 74228464 rs893816 C T 1047 | 15 74229195 rs893818 G A 1048 | 15 74231349 rs16958494 C T 1049 | 15 74243897 rs12441138 G A 1050 | 15 78827631 rs28675338 C T 1051 | 15 78827631 rs58709975 C CT 1052 | 15 78833223 rs12901682 A C 1053 | 15 85088657 rs3883013 T C 1054 | 15 85187245 rs34069323 T C 1055 | 15 86854590 rs10152811 A C 1056 | 15 86984240 rs16977195 A G 1057 | 15 87064089 rs12591257 A C 1058 | 15 92930411 rs17702901 G A 1059 | 15 100786271 rs4533267 A G 1060 | 16 2445480 rs6600203 T G 1061 | 16 2446021 rs4497687 G A 1062 | 16 2484783 rs8052046 A C 1063 | 16 2488693 rs12926827 T C 1064 | 16 2499011 rs8060813 T C 1065 | 16 2502641 rs1136062 T C 1066 | 16 3509056 rs40363 G A 1067 | 16 7164219 rs1478693 T G 1068 | 16 8503222 rs8045405 G A 1069 | 16 10188060 rs7203315 G T 1070 | 16 11701649 rs13333308 T C 1071 | 16 28097915 rs8051871 A G 1072 | 16 30536916 rs61735343 T C 1073 | 16 53769677 rs6499640 G A 1074 | 16 53769677 rs6499640 G A 1075 | 16 53813367 rs17817449 T G 1076 | 16 53816275 rs8050136 C A 1077 | 16 53816275 rs8050136 C A 1078 | 16 53816275 rs8050136 C A 1079 | 16 53820527 rs9939609 T A 1080 | 16 53842908 rs12149832 G A 1081 | 16 56985139 rs9989419 A G 1082 | 16 56993324 rs3764261 C A 1083 | 16 57005479 rs1532624 C A 1084 | 16 58567238 rs37062 A G 1085 | 16 78187138 rs1079572 G A 1086 | 16 79570138 rs821232 A C 1087 | 16 80192605 rs8060581 G C 1088 | 16 82646333 rs3844412 A G 1089 | 16 84987679 rs2326458 C A 1090 | 16 85906616 rs11648716 A G 1091 | 16 85961562 rs17444745 G A 1092 | 16 87364650 rs1062746 T C 1093 | 16 89986117 rs1805007 C T 1094 | 17 5788346 rs189869876 G T 1095 | 17 7521915 rs12150660 G T 1096 | 17 7534678 rs6258 C T 1097 | 17 29247715 rs3760318 G A 1098 | 17 30896455 rs225212 C T 1099 | 17 36098040 rs4430796 G A 1100 | 17 44081064 rs8070723 A G 1101 | 17 44187257 rs9303525 A G 1102 | 17 61566031 rs4343 G A 1103 | 17 64866456 rs1120577 A G 1104 | 17 68259446 rs623011 A G 1105 | 17 68976415 rs6501431 C T 1106 | 17 69096808 rs12449659 T C 1107 | 17 71600245 rs790092 T C 1108 | 17 72699833 rs10512597 T C 1109 | 17 74309561 rs2279055 C G 1110 | 17 75313335 rs4788985 A G 1111 | 17 76110518 rs2613514 A G 1112 | 18 2377088 rs7227539 A G 1113 | 18 5978931 rs1539808 C T 1114 | 18 6666417 rs7505079 A G 1115 | 18 8931652 rs7244245 T C 1116 | 18 11064409 rs12455924 C T 1117 | 18 11987272 rs7506045 C T 1118 | 18 20724328 rs4800148 G A 1119 | 18 24801301 rs11660384 C T 1120 | 18 24806736 rs17712675 G C 1121 | 18 24807371 rs7228535 A T 1122 | 18 31420010 rs1013696 T C 1123 | 18 35214006 rs2162440 A G 1124 | 18 38768209 rs12971263 T C 1125 | 18 40437651 rs16977065 C T 1126 | 18 50517776 rs7504990 T C 1127 | 18 53210302 rs613872 G T 1128 | 18 54886093 rs77512994 T C 1129 | 18 62898666 rs637644 A G 1130 | 18 74735135 rs11663697 G T 1131 | 18 75367624 rs517543 C T 1132 | 19 5839746 rs3760776 G A 1133 | 19 7424528 rs6603109 A T 1134 | 19 8181037 rs12460407 T C 1135 | 19 10310392 rs2116940 A G 1136 | 19 10394792 rs1799969 G A 1137 | 19 10394792 rs1799969 G A 1138 | 19 10395683 rs5498 A G 1139 | 19 10395683 rs5498 A G 1140 | 19 10397238 rs281437 C T 1141 | 19 11200008 rs17249141 C T 1142 | 19 11200008 rs17249141 C T 1143 | 19 11202306 rs6511720 G T 1144 | 19 11202306 rs6511720 G T 1145 | 19 11202306 rs6511720 G T 1146 | 19 12146370 rs3745672 T C 1147 | 19 15772414 rs7258240 G A 1148 | 19 16185559 rs8109288 G A 1149 | 19 16185559 rs8109288 G A 1150 | 19 17354825 rs4808611 C T 1151 | 19 17359535 rs35686037 C T 1152 | 19 17371568 rs12982178 T C 1153 | 19 17379558 rs10424178 C T 1154 | 19 17389648 rs10406920 C T 1155 | 19 17389704 rs8170 G A 1156 | 19 17590281 rs11666579 G T 1157 | 19 19407718 rs10401969 T C 1158 | 19 19658472 rs16996148 G T 1159 | 19 29736342 rs11083866 G A 1160 | 19 39743165 rs8099917 T G 1161 | 19 41354533 rs1801272 A T 1162 | 19 45403412 rs1160985 C T 1163 | 19 45412079 rs7412 C T 1164 | 19 45412079 rs7412 C T 1165 | 19 45414451 rs439401 T C 1166 | 19 45415640 rs445925 G A 1167 | 19 45422946 rs4420638 A G 1168 | 19 45422946 rs4420638 A G 1169 | 19 45422946 rs4420638 A G 1170 | 19 45422946 rs4420638 A G 1171 | 19 45422946 rs4420638 A G 1172 | 19 46800433 rs3826795 G A 1173 | 19 48527582 rs3936340 C T 1174 | 19 49206631 rs1047781 A T 1175 | 19 49206985 rs602662 G A 1176 | 19 51361757 rs17632542 T C 1177 | 19 52084836 rs1543922 C T 1178 | 19 55879872 rs1126757 C T 1179 | 20 926397 rs502716 G A 1180 | 20 926397 rs502716 G A 1181 | 20 2755488 rs6138892 T C 1182 | 20 3185123 rs11697186 A T 1183 | 20 3187733 rs6139030 T C 1184 | 20 5949534 rs4815879 G A 1185 | 20 6582162 rs6140038 C T 1186 | 20 10165933 rs883382 A G 1187 | 20 10183517 rs6039763 A G 1188 | 20 10197086 rs1889189 T C 1189 | 20 10198954 rs6039769 A C 1190 | 20 12826999 rs1321936 G A 1191 | 20 20961292 rs4813407 C A 1192 | 20 21662517 rs6035924 T G 1193 | 20 21675671 rs6047583 G A 1194 | 20 29904377 rs6141273 G A 1195 | 20 31768655 rs6120141 T C 1196 | 20 31798437 rs17124372 T C 1197 | 20 33545616 rs17310467 A G 1198 | 20 41991601 rs2010809 C T 1199 | 20 45278169 rs1004571 A G 1200 | 20 45288453 rs6066043 G A 1201 | 20 45306928 rs4810537 A G 1202 | 20 45680502 rs878131 A G 1203 | 20 45834279 rs7262634 T C 1204 | 20 47379811 rs2426087 G A 1205 | 20 47982128 rs237450 G A 1206 | 20 48405168 rs663890 G T 1207 | 20 48423756 rs4297943 G A 1208 | 20 50200782 rs1546920 C T 1209 | 20 50201217 rs6096487 G A 1210 | 20 57562102 rs2273359 C G 1211 | 20 58898209 rs6027511 T C 1212 | 20 59635795 rs6129028 A G 1213 | 20 61895920 rs1406961 A C 1214 | 21 26582390 rs2829643 T G 1215 | 21 26586324 rs2829644 A G 1216 | 21 26625261 rs2040271 T C 1217 | 21 26625977 rs2829662 C T 1218 | 21 26626573 rs2829664 C G 1219 | 21 35880072 rs727957 G T 1220 | 21 36208062 rs9976946 C T 1221 | 21 41278302 rs2244189 C T 1222 | 21 43443498 rs2839440 C T 1223 | 21 47124178 rs4819143 G A 1224 | 22 24999104 rs2073398 C G 1225 | 22 26543287 rs134748 G T 1226 | 22 26697195 rs591044 T C 1227 | 22 28178948 rs12158991 G A 1228 | 22 31153276 rs9609078 G A 1229 | 22 32229649 rs5994434 G A 1230 | 22 36517932 rs1476029 C T 1231 | 22 37753999 rs739189 C A 1232 | 22 42688724 rs17002948 T G 1233 | 22 44324727 rs738409 C G 1234 | X 22134658 rs5951698 A G 1235 | X 22892077 rs5925696 A G 1236 | X 25853614 rs5944185 T C 1237 | X 28233053 rs5971305 G A 1238 | X 33784063 rs5928363 A T 1239 | X 37854727 rs872690 T C 1240 | X 41493905 rs5918213 C T 1241 | X 64367019 rs7064929 G A 1242 | X 65606693 rs5965182 T A 1243 | X 66563018 rs2497938 T C 1244 | X 142823406 rs192138826 G T 1245 | X 142827026 rs190796883 A C 1246 | X 142827897 rs141261373 C T 1247 | X 142830316 rs145189928 T G 1248 | X 142832475 rs149912409 T C 1249 | X 142838848 rs138067008 G A 1250 | X 142842119 rs139956886 C T 1251 | X 143364654 rs6637197 C T 1252 | -------------------------------------------------------------------------------- /intervardb/PS4.variants.hg38: -------------------------------------------------------------------------------- 1 | CHR POS_hg38 SNPID REF ALT 2 | 1 2137467 rs3128296 G T 3 | 1 3369064 rs6424073 G A 4 | 1 9348900 rs11121380 A C 5 | 1 15465931 rs2901964 C G 6 | 1 17967993 rs16861326 G A 7 | 1 24866664 rs3131513 G A 8 | 1 29102492 rs12045777 C T 9 | 1 29805703 rs10914475 C T 10 | 1 39968099 rs3103778 A G 11 | 1 43651335 rs660899 G T 12 | 1 53447407 rs9436924 C T 13 | 1 53471504 rs1296438 A G 14 | 1 53471504 rs1296438 A G 15 | 1 53492930 rs1298637 C T 16 | 1 53492930 rs1298637 C T 17 | 1 54938349 rs1889209 A G 18 | 1 55159875 rs17111684 C T 19 | 1 55647101 rs10443215 C T 20 | 1 62583922 rs1748195 C G 21 | 1 65526942 rs1751492 C T 22 | 1 65624099 rs6700896 C T 23 | 1 69869999 rs2226284 T C 24 | 1 70421416 rs672203 A G 25 | 1 70468576 rs8179319 G A 26 | 1 75640990 rs211718 T C 27 | 1 76373851 rs12144344 C T 28 | 1 76523579 rs315087 T C 29 | 1 90410331 rs2136093 T C 30 | 1 91538362 rs17501381 T C 31 | 1 91546924 rs17501512 G C 32 | 1 94209170 rs2274788 T C 33 | 1 94587797 rs12029080 T G 34 | 1 102260843 rs17126268 T C 35 | 1 102261246 rs7539242 G A 36 | 1 102261246 rs7539242 G A 37 | 1 102269395 rs12120258 G T 38 | 1 102273961 rs12140211 C T 39 | 1 106293321 rs1330225 T C 40 | 1 106293321 rs1330225 T C 41 | 1 106921021 rs12125971 C T 42 | 1 107760300 rs12142335 G A 43 | 1 107772515 rs4462178 C T 44 | 1 109275684 rs629301 G T 45 | 1 109275684 rs629301 G T 46 | 1 109279544 rs599839 G A 47 | 1 109279544 rs599839 G A 48 | 1 109279544 rs599839 G A 49 | 1 111873741 rs2788612 T C 50 | 1 114135326 rs529989 C A 51 | 1 116927159 rs2806864 C G 52 | 1 145849020 rs17352344 T C 53 | 1 145707383 rs1797052 C T 54 | 1 147548685 rs594206 A C 55 | 1 147548685 rs594206 A G 56 | 1 147548685 rs594206 A T 57 | 1 149920979 rs11205277 A G 58 | 1 150305958 rs12403795 C T 59 | 1 152110849 rs11803731 A T 60 | 1 152565478 rs10888501 G A 61 | 1 153796924 rs9426935 C T 62 | 1 153876520 rs7414227 G A 63 | 1 153941294 rs2252508 A G 64 | 1 153966654 rs11264736 C T 65 | 1 154368313 rs12025518 A C 66 | 1 154429203 rs2228144 G A 67 | 1 154446403 rs4537545 C T 68 | 1 154454494 rs2228145 A C 69 | 1 154454494 rs2228145 A G 70 | 1 154454494 rs2228145 A T 71 | 1 159302270 rs2251746 T C 72 | 1 159728759 rs7553007 G A 73 | 1 162115895 rs10494366 G T 74 | 1 165062864 rs12049436 T C 75 | 1 165478920 rs10918196 T C 76 | 1 169508336 rs6687813 A C 77 | 1 169594713 rs6136 T G 78 | 1 169611052 rs2235302 C T 79 | 1 170157600 rs16863069 A C 80 | 1 171122735 rs1795240 A G 81 | 1 172220749 rs678962 T G 82 | 1 182052148 rs7554182 C T 83 | 1 183867898 rs4651156 A G 84 | 1 184051811 rs2274432 G A 85 | 1 185825751 rs13375391 G A 86 | 1 194622623 rs13376197 T C 87 | 1 195867138 rs12140768 T C 88 | 1 202500595 rs12734338 T C 89 | 1 207955377 rs2745967 G A 90 | 1 221443734 rs12032381 A C 91 | 1 230074043 rs6684432 T C 92 | 1 233584238 rs11800854 G A 93 | 1 233584238 rs11800854 G A 94 | 1 233757583 rs6687540 G C 95 | 1 240120436 rs11810574 A G 96 | 1 241728933 rs9782914 T C 97 | 1 241730784 rs10926554 C A 98 | 1 241730784 rs10926554 C A 99 | 1 244004499 rs12127679 C T 100 | 1 245540688 rs9919234 G T 101 | 2 644953 rs7561317 A G 102 | 2 644953 rs7561317 A G 103 | 2 663483 rs12999373 G A 104 | 2 1224717 rs6548209 T G 105 | 2 1227545 rs10192365 A G 106 | 2 1434216 rs1514687 T G 107 | 2 18240747 rs12710680 A G 108 | 2 21002409 rs1042034 C T 109 | 2 21008652 rs676210 G A 110 | 2 21354871 rs219553 G A 111 | 2 25053415 rs6733301 G A 112 | 2 27508073 rs1260326 T C 113 | 2 27518370 rs780094 T C 114 | 2 27519736 rs780093 T C 115 | 2 38050689 rs6741148 T G 116 | 2 39720581 rs2716734 C T 117 | 2 43846517 rs41360247 T C 118 | 2 43847292 rs4245791 C T 119 | 2 43847292 rs4245791 C T 120 | 2 44989446 rs6705604 G A 121 | 2 47012873 rs10194115 G T 122 | 2 48974189 rs2268363 A G 123 | 2 49264671 rs10495970 G A 124 | 2 49270867 rs9636436 G A 125 | 2 54993448 rs17046570 C T 126 | 2 55729088 rs4672066 A G 127 | 2 55760722 rs4672069 C G 128 | 2 55761158 rs4233963 T C 129 | 2 55761546 rs11694759 T G 130 | 2 55761813 rs11887339 A G 131 | 2 55765770 rs1961386 A G 132 | 2 55767683 rs934274 A G 133 | 2 55767721 rs934275 T C 134 | 2 55769652 rs11693187 G A 135 | 2 55769824 rs11676678 T A 136 | 2 55770511 rs13404193 A G 137 | 2 55770736 rs11694790 C T 138 | 2 55770873 rs934276 T C 139 | 2 55771038 rs934277 C T 140 | 2 55771455 rs12614845 T C 141 | 2 55771715 rs11684982 A T 142 | 2 55773048 rs4671259 A G 143 | 2 55775237 rs7560508 C T 144 | 2 55775269 rs1430198 G A 145 | 2 55775550 rs1430199 G A 146 | 2 55775788 rs1430200 T C 147 | 2 55775918 rs9309269 G A 148 | 2 55776853 rs6742316 A T 149 | 2 55777004 rs6723918 A G 150 | 2 55782535 rs11125600 C G 151 | 2 55782949 rs9309270 T C 152 | 2 55783471 rs77406423 A C 153 | 2 55793050 rs7602081 T C 154 | 2 55806292 rs1430191 C T 155 | 2 55809941 rs1346781 C T 156 | 2 55825350 rs11903784 G T 157 | 2 55826917 rs1594308 T G 158 | 2 55827081 rs6733730 G C 159 | 2 55828301 rs6545526 T G 160 | 2 55832017 rs143080645 T C 161 | 2 55833524 rs57692404 C T 162 | 2 55834160 rs543949007 CT C 163 | 2 55834160 rs7609520 C T 164 | 2 55836772 rs148288741 A T 165 | 2 55838219 rs116371971 C G 166 | 2 55842270 rs1430201 T A 167 | 2 55843217 rs934278 G A 168 | 2 55846674 rs6545527 T C 169 | 2 55847390 rs6743114 A G 170 | 2 55851282 rs7607070 A T 171 | 2 55851420 rs116212307 G A 172 | 2 55862405 rs1367226 A G 173 | 2 55862978 rs11125607 T A 174 | 2 55863202 rs17047272 A G 175 | 2 55865477 rs1346787 C T 176 | 2 55867259 rs77784128 G A 177 | 2 55869757 rs3791679 A G 178 | 2 55872537 rs75943405 G A 179 | 2 55873711 rs17047277 C G 180 | 2 55875417 rs17047281 T C 181 | 2 55880625 rs75915915 C T 182 | 2 55880769 rs74968080 A G 183 | 2 55880841 rs78077363 C T 184 | 2 55885033 rs17047300 G A 185 | 2 55886611 rs75000414 C T 186 | 2 55888724 rs10496055 G A 187 | 2 55893718 rs1430193 A T 188 | 2 55931511 rs2868440 C T 189 | 2 55936740 rs7563487 C T 190 | 2 55939695 rs12617071 T G 191 | 2 55954983 rs11694304 G C 192 | 2 55955531 rs72811742 C T 193 | 2 55956516 rs6749890 C G 194 | 2 55956721 rs17279016 C T 195 | 2 55957613 rs2163714 C A 196 | 2 55959047 rs1432562 G A 197 | 2 55959390 rs1465684 C A 198 | 2 55968561 rs62164511 A G 199 | 2 56034356 rs10469875 G C 200 | 2 60490908 rs1427407 T G 201 | 2 64137498 rs6733160 T C 202 | 2 64276761 rs2698530 A C 203 | 2 64276761 rs2698530 A C 204 | 2 64276761 rs2698530 A C 205 | 2 69496578 rs7577851 C T 206 | 2 75563363 rs17011455 T C 207 | 2 78956287 rs12986641 T C 208 | 2 78956390 rs12986856 T C 209 | 2 78957503 rs17692905 C T 210 | 2 78958289 rs13000084 C A 211 | 2 78958559 rs17692957 C T 212 | 2 78958778 rs13001435 G T 213 | 2 78959187 rs13007327 G A 214 | 2 78959437 rs13007459 C A 215 | 2 78959632 rs34474458 C T 216 | 2 78959659 rs13008392 G A 217 | 2 78960002 rs35919794 A T 218 | 2 78960011 rs36072286 T C 219 | 2 78960025 rs35743083 T C 220 | 2 78960255 rs11674703 T C 221 | 2 78960331 rs13014457 C T 222 | 2 78960363 rs11679961 A C 223 | 2 78960376 rs11691084 C T 224 | 2 78960462 rs11691141 C G 225 | 2 78961146 rs71424840 T C 226 | 2 78962934 rs11683300 A G 227 | 2 78962947 rs11695755 C T 228 | 2 78963391 rs11679452 T C 229 | 2 78964003 rs55857353 C T 230 | 2 78966037 rs35119416 T G 231 | 2 78967542 rs11693972 C G 232 | 2 78974792 rs34611177 A T 233 | 2 78986342 rs17749826 G A 234 | 2 78987765 rs10520222 C T 235 | 2 78988622 rs11676773 A G 236 | 2 78989670 rs13008188 G A 237 | 2 78992264 rs11694350 G A 238 | 2 85908031 rs2679722 G A 239 | 2 85918664 rs7593080 C T 240 | 2 85926732 rs2164878 C T 241 | 2 85928148 rs6547647 C T 242 | 2 85933439 rs7576135 C T 243 | 2 85942866 rs2366958 T C 244 | 2 86239426 rs13017143 T C 245 | 2 86289861 rs13023154 G A 246 | 2 101960377 rs191222274 G A 247 | 2 102341256 rs1420101 C T 248 | 2 102895834 rs13402330 T A 249 | 2 105261413 rs17636747 C T 250 | 2 105840835 rs2377339 A G 251 | 2 111897665 rs6736093 A G 252 | 2 111908100 rs17779482 C T 253 | 2 112036404 rs11684476 T C 254 | 2 112058659 rs4848979 G T 255 | 2 112906296 rs2708973 A G 256 | 2 113731675 rs3762491 G A 257 | 2 122368903 rs10496584 A G 258 | 2 122370213 rs2037892 G A 259 | 2 122379314 rs1919922 C T 260 | 2 122383969 rs4848768 A G 261 | 2 122533446 rs1527243 C T 262 | 2 124524333 rs17727261 C T 263 | 2 126573377 rs1550404 T G 264 | 2 129710793 rs10928927 C T 265 | 2 133680388 rs1901440 C A 266 | 2 133684961 rs6430443 A G 267 | 2 134741354 rs1942055 G C 268 | 2 141038051 rs10210358 A G 269 | 2 141820914 rs6429923 T C 270 | 2 147560953 rs12464146 T C 271 | 2 162053713 rs6741949 G C 272 | 2 167927844 rs11894600 C A 273 | 2 210195326 rs2286963 T G 274 | 2 212959321 rs12619285 A G 275 | 2 214477166 rs7604827 C T 276 | 2 215973976 rs3770535 T C 277 | 2 217647875 rs6733585 A G 278 | 2 218265791 rs1079204 G A 279 | 2 219069626 rs1052483 G T 280 | 2 223008019 rs1371647 G A 281 | 2 230365456 rs6712333 C T 282 | 2 230365456 rs6712333 C T 283 | 2 231931900 rs749052 T C 284 | 2 233035379 rs11695991 A C 285 | 2 233608068 rs2741023 G A 286 | 2 233608068 rs2741023 G A 287 | 2 233621514 rs2741029 T G 288 | 2 233640168 rs2741034 A G 289 | 2 233640168 rs2741034 A G 290 | 2 233671494 rs2741045 C T 291 | 2 233680544 rs10197460 G T 292 | 2 233687101 rs6736508 G A 293 | 2 233690345 rs7563561 T G 294 | 2 233690443 rs7608175 C G 295 | 2 233693023 rs6759892 T G 296 | 2 233693545 rs2070959 A G 297 | 2 233693556 rs1105879 A C 298 | 2 233716651 rs6744284 C T 299 | 2 233730664 rs11891311 G A 300 | 2 233741958 rs4663965 T C 301 | 2 233758936 rs3755319 A C 302 | 2 233759924 rs887829 C T 303 | 2 233763993 rs6742078 G T 304 | 2 233764663 rs4148325 C T 305 | 2 233944048 rs12472151 G A 306 | 2 233946710 rs12992084 T C 307 | 2 234018616 rs11901004 G T 308 | 2 234021042 rs17866592 T C 309 | 2 237997673 rs9751676 G C 310 | 2 239960704 rs13424612 C T 311 | 3 375260 rs3773383 G A 312 | 3 2804632 rs975334 G A 313 | 3 2854000 rs11713158 T C 314 | 3 3106297 rs17879755 G A 315 | 3 6214310 rs6774280 T C 316 | 3 11573733 rs2574706 T C 317 | 3 12288912 rs17036170 G A 318 | 3 15109290 rs9867224 A G 319 | 3 23863271 rs28405582 T C 320 | 3 24180456 rs2683540 G T 321 | 3 24772123 rs11129165 C T 322 | 3 31025960 rs294314 C T 323 | 3 32113556 rs17028885 C T 324 | 3 33085480 rs73043340 C T 325 | 3 37813623 rs11129773 C T 326 | 3 38547672 rs11129795 G A 327 | 3 38551902 rs12053903 T C 328 | 3 38582762 rs3922844 T C 329 | 3 38725184 rs6795970 A G 330 | 3 38725184 rs6795970 A G 331 | 3 38737698 rs6776034 T A 332 | 3 38737698 rs6776034 T A 333 | 3 42184659 rs4234445 T C 334 | 3 45242823 rs33773 G A 335 | 3 45248515 rs28288 G A 336 | 3 45259113 rs33794 A G 337 | 3 50094698 rs2624834 G T 338 | 3 53646097 rs1401492 C T 339 | 3 53646097 rs1401492 C T 340 | 3 56815721 rs1354034 T C 341 | 3 56815721 rs1354034 T C 342 | 3 56815721 rs1354034 T C 343 | 3 56815721 rs1354034 T C 344 | 3 56815721 rs1354034 T C 345 | 3 60479546 rs1447971 G A 346 | 3 60705872 rs1735460 T C 347 | 3 65500713 rs1524976 A G 348 | 3 66395177 rs9827908 A G 349 | 3 88823354 rs1384771 G A 350 | 3 98315682 rs1497546 G A 351 | 3 121365620 rs11707293 C T 352 | 3 128541707 rs4857855 C T 353 | 3 130418627 rs1542829 G A 354 | 3 133765185 rs3811647 G A 355 | 3 133765185 rs3811647 G A 356 | 3 133765185 rs3811647 G A 357 | 3 134126102 rs6800143 G A 358 | 3 134222476 rs1131262 C T 359 | 3 134238421 rs9856298 A G 360 | 3 138956224 rs7626152 T C 361 | 3 138997658 rs2348394 A T 362 | 3 139142869 rs13101018 T C 363 | 3 139149040 rs11915859 T A 364 | 3 141383991 rs6763931 G A 365 | 3 157079820 rs17451107 T C 366 | 3 157079820 rs17451107 T C 367 | 3 157079820 rs17451107 T C 368 | 3 157079820 rs17451107 T C 369 | 3 157079859 rs10049088 C T 370 | 3 157079859 rs10049088 C T 371 | 3 157079859 rs10049088 C T 372 | 3 157079859 rs10049088 C T 373 | 3 157080684 rs1482853 C A 374 | 3 157080684 rs1482853 C A 375 | 3 157080684 rs1482853 C A 376 | 3 157080684 rs1482853 C A 377 | 3 157080684 rs1482853 C A 378 | 3 157080684 rs1482853 C A 379 | 3 157080684 rs1482853 C A 380 | 3 157080684 rs1482853 C A 381 | 3 157080684 rs1482853 C A 382 | 3 157080684 rs1482853 C A 383 | 3 157080684 rs1482853 C A 384 | 3 157080986 rs900400 T C 385 | 3 157080986 rs900400 T C 386 | 3 157080986 rs900400 T C 387 | 3 157080986 rs900400 T C 388 | 3 161742228 rs16833312 C T 389 | 3 162123230 rs2175263 A T 390 | 3 168180033 rs2686586 T C 391 | 3 186495995 rs11918665 A G 392 | 3 186495995 rs11918665 A G 393 | 3 186502274 rs1868152 A G 394 | 3 186502274 rs1868152 A G 395 | 3 187738921 rs3733017 T G 396 | 3 189338143 rs142095888 A G 397 | 3 190182293 rs16865151 T C 398 | 3 191949988 rs7635839 G A 399 | 3 193054506 rs13068101 G A 400 | 4 1084399 rs1670533 G A 401 | 4 1101493 rs3796619 A G 402 | 4 4251229 rs2980098 A G 403 | 4 9925343 rs13129697 T G 404 | 4 9925343 rs13129697 T G 405 | 4 12968715 rs115432166 A G 406 | 4 15963240 rs4698433 G T 407 | 4 16020917 rs2677780 G A 408 | 4 16892270 rs1483012 G A 409 | 4 16906381 rs6819013 A G 410 | 4 18016107 rs6830062 T C 411 | 4 18127018 rs1503874 G A 412 | 4 18864546 rs6845621 G A 413 | 4 21259968 rs12642021 A G 414 | 4 24374210 rs17650401 C T 415 | 4 25401644 rs16877106 C T 416 | 4 27192449 rs13149020 C A 417 | 4 32960408 rs10033556 G A 418 | 4 34892233 rs17390445 A G 419 | 4 36075270 rs17493657 T C 420 | 4 48477701 rs1565217 T C 421 | 4 48493560 rs13114836 C G 422 | 4 71742398 rs705117 C T 423 | 4 71752617 rs7041 A C 424 | 4 73104747 rs6818964 C T 425 | 4 75491177 rs13137105 A G 426 | 4 75556520 rs17000647 C A 427 | 4 77215780 rs11937061 G T 428 | 4 77684215 rs958617 A G 429 | 4 81004553 rs11946008 T A 430 | 4 81021914 rs2868128 C T 431 | 4 81024229 rs17005024 A G 432 | 4 85730311 rs7660702 T C 433 | 4 87834676 rs7698623 T C 434 | 4 88117930 rs1481012 A G 435 | 4 88131171 rs2231142 G T 436 | 4 89265608 rs6532150 G A 437 | 4 99216337 rs6820368 T C 438 | 4 105697983 rs11727189 G T 439 | 4 110812980 rs3853444 T C 440 | 4 114366328 rs4521415 T C 441 | 4 116449550 rs114918764 C T 442 | 4 123130312 rs9999118 A G 443 | 4 128775066 rs1974942 A G 444 | 4 138569037 rs1349345 C G 445 | 4 138572244 rs1450439 A G 446 | 4 144653692 rs1812175 A G 447 | 4 145873469 rs4547811 T C 448 | 4 150180520 rs11947645 G A 449 | 4 151497314 rs17690873 G A 450 | 4 154567669 rs6056 C T 451 | 4 154593727 rs13109457 G A 452 | 4 158709665 rs8396 T C 453 | 4 162321901 rs4440177 G A 454 | 4 169648021 rs6857404 C T 455 | 4 181301574 rs17183114 G T 456 | 4 181688712 rs12641856 G A 457 | 4 184000146 rs12498735 C T 458 | 4 186227233 rs4253238 C T 459 | 5 1321972 rs401681 C T 460 | 5 1877166 rs4975709 A C 461 | 5 3576115 rs1867710 G A 462 | 5 8652758 rs200113 T C 463 | 5 14071948 rs163818 T C 464 | 5 21749239 rs12109285 T C 465 | 5 29249437 rs7717683 A G 466 | 5 29283750 rs75104673 T C 467 | 5 29313820 rs7444137 T C 468 | 5 36308995 rs16902947 A G 469 | 5 52897294 rs4074793 A G 470 | 5 58362589 rs26977 T G 471 | 5 58390748 rs375523 A G 472 | 5 58475260 rs6450476 A G 473 | 5 67898641 rs10940138 C T 474 | 5 73720985 rs16870743 A G 475 | 5 73981078 rs6894385 A C 476 | 5 74095900 rs10045219 C T 477 | 5 74101289 rs725144 G A 478 | 5 74127700 rs17555780 A G 479 | 5 74134336 rs4703622 A G 480 | 5 74136176 rs12517914 G A 481 | 5 74137255 rs10058853 A T 482 | 5 74141678 rs4704110 T C 483 | 5 74146023 rs392079 G C 484 | 5 74146613 rs2120729 G A 485 | 5 74154263 rs2926721 G A 486 | 5 74154870 rs2926720 G A 487 | 5 74165247 rs290725 T C 488 | 5 75329662 rs7703051 C A 489 | 5 76751114 rs17568628 T C 490 | 5 76928346 rs2460504 G C 491 | 5 77485646 rs163030 A C 492 | 5 77996116 rs12655917 G A 493 | 5 83013309 rs7736398 T C 494 | 5 88887834 rs17560407 A G 495 | 5 94474503 rs6869388 T C 496 | 5 96117919 rs73136503 A G 497 | 5 103428347 rs2099077 C A 498 | 5 107927879 rs11743737 T C 499 | 5 111099792 rs2416257 C T 500 | 5 114463289 rs17136627 C T 501 | 5 125030274 rs6862844 A C 502 | 5 126697272 rs1546498 C T 503 | 5 129664693 rs13436218 T G 504 | 5 132335969 rs12777 C G 505 | 5 132408882 rs1016988 T C 506 | 5 132527285 rs4143832 T G 507 | 5 132637485 rs2040704 A G 508 | 5 133159493 rs13178251 A G 509 | 5 133264647 rs6876130 T C 510 | 5 135237317 rs1346440 C T 511 | 5 135238302 rs2019973 C T 512 | 5 137237104 rs17779700 A G 513 | 5 145659268 rs10515552 T C 514 | 5 148933204 rs7729953 T C 515 | 5 149762504 rs9285640 G A 516 | 5 152333391 rs17113106 A G 517 | 5 164442837 rs6556752 C T 518 | 5 165950694 rs9313296 G C 519 | 5 165950694 rs9313296 G C 520 | 5 168073455 rs13358864 T A 521 | 5 169420964 rs13177680 A C 522 | 5 172865303 rs6890783 G A 523 | 6 2235399 rs9378688 G A 524 | 6 3836964 rs17318866 G A 525 | 6 4874525 rs73717741 C G 526 | 6 5897535 rs11243038 T C 527 | 6 5898142 rs12193326 A G 528 | 6 5902435 rs10155777 C G 529 | 6 5903761 rs7744130 G A 530 | 6 5904089 rs7769375 A G 531 | 6 5904558 rs10155695 T C 532 | 6 5910072 rs1001289 C T 533 | 6 5919469 rs12213320 A G 534 | 6 7719826 rs12198986 G A 535 | 6 7800879 rs6923462 T C 536 | 6 12196980 rs1040994 C A 537 | 6 16232325 rs114353847 A C 538 | 6 21278973 rs9368292 C G 539 | 6 21281858 rs9348464 A G 540 | 6 21286603 rs9466024 G A 541 | 6 23173385 rs7754121 G A 542 | 6 24721559 rs9379687 C A 543 | 6 25812922 rs1165196 G A 544 | 6 25821542 rs17342717 C T 545 | 6 26092913 rs1800562 G A 546 | 6 26092913 rs1800562 G A 547 | 6 26233159 rs10946808 A G 548 | 6 29945521 rs1061235 A T 549 | 6 30768374 rs12526186 C T 550 | 6 30827394 rs7772131 A C 551 | 6 31008442 rs28360974 G A 552 | 6 31090563 rs3130544 C A 553 | 6 31306603 rs9264942 T C 554 | 6 31354590 rs3819299 T G 555 | 6 31354590 rs3819299 T G 556 | 6 31464003 rs2395029 T G 557 | 6 31464003 rs2395029 T G 558 | 6 31464003 rs2395029 T G 559 | 6 31537703 rs2734583 A G 560 | 6 32082290 rs185819 T C 561 | 6 32338202 rs3129900 G T 562 | 6 32353777 rs2395148 G T 563 | 6 32619077 rs9271366 G A 564 | 6 32636595 rs9272346 G A 565 | 6 32638107 rs2187668 C T 566 | 6 32638107 rs2187668 C T 567 | 6 32700133 rs2647044 G A 568 | 6 33497705 rs9394152 C T 569 | 6 33572432 rs210134 A G 570 | 6 33572432 rs210134 A G 571 | 6 33573942 rs513349 A G 572 | 6 34227234 rs1776897 G T 573 | 6 35435008 rs4713858 A G 574 | 6 36655123 rs1321311 C A 575 | 6 38068644 rs17589516 A G 576 | 6 39336435 rs3734621 A C 577 | 6 39339256 rs9471075 A C 578 | 6 39339256 rs9471075 A C 579 | 6 46716485 rs1805017 C T 580 | 6 47915072 rs10807383 A G 581 | 6 51778216 rs728996 C T 582 | 6 67176026 rs9342616 A G 583 | 6 67604513 rs41388347 C T 584 | 6 72461892 rs1572208 T C 585 | 6 75133644 rs240727 G A 586 | 6 78846449 rs16890334 T C 587 | 6 78846449 rs16890334 T C 588 | 6 80593088 rs10943724 C A 589 | 6 94438184 rs9354118 C T 590 | 6 99335003 rs17059400 A C 591 | 6 103594816 rs6571130 A G 592 | 6 104959787 rs314277 A C 593 | 6 118252898 rs281868 G A 594 | 6 118297818 rs166881 T C 595 | 6 118359211 rs11970286 C T 596 | 6 121427396 rs11154022 A G 597 | 6 121793305 rs9320841 A G 598 | 6 121824888 rs9398652 C A 599 | 6 124360357 rs12204812 C A 600 | 6 124367609 rs911959 T C 601 | 6 126643364 rs4273712 A G 602 | 6 127873328 rs12194062 C T 603 | 6 130228918 rs10447419 C A 604 | 6 130641729 rs1532986 G T 605 | 6 130646443 rs9492683 A G 606 | 6 130935224 rs7769153 T G 607 | 6 130961070 rs6941712 T C 608 | 6 135097880 rs9399137 T C 609 | 6 135097880 rs9399137 T C 610 | 6 135097880 rs9399137 T C 611 | 6 135105435 rs4895441 A G 612 | 6 135111414 rs9494145 T C 613 | 6 137352165 rs6928289 G A 614 | 6 142190999 rs225675 A G 615 | 6 142446496 rs3748069 A G 616 | 6 149008131 rs2500535 A G 617 | 6 149008131 rs2500535 A G 618 | 6 155608667 rs35229355 C T 619 | 6 158919640 rs9365009 A C 620 | 6 160589086 rs10455872 A G 621 | 6 166944633 rs3734247 T C 622 | 6 169643550 rs9295020 A G 623 | 7 2723468 rs798544 C T 624 | 7 11242742 rs10440955 T C 625 | 7 11242760 rs4620184 C G 626 | 7 11245712 rs10950343 T G 627 | 7 12055340 rs1035147 A C 628 | 7 14406292 rs6971925 T C 629 | 7 15703161 rs10486776 G A 630 | 7 16287021 rs35681285 T C 631 | 7 27964579 rs4722750 C T 632 | 7 32300487 rs12531858 C A 633 | 7 32355266 rs12532023 G C 634 | 7 32357657 rs7791060 A G 635 | 7 41007027 rs6947406 A G 636 | 7 41582932 rs4724055 G T 637 | 7 52072203 rs10237629 A T 638 | 7 52090846 rs1986783 G A 639 | 7 68400815 rs73146440 A G 640 | 7 72664689 rs13238203 C T 641 | 7 73568544 rs17145738 C T 642 | 7 73568544 rs17145738 C T 643 | 7 73606007 rs3812316 C G 644 | 7 92635096 rs2282978 T C 645 | 7 93358133 rs2285505 T C 646 | 7 93359086 rs3735650 T G 647 | 7 97388483 rs10255878 G A 648 | 7 98885449 rs12155122 C T 649 | 7 99410772 rs17161726 C G 650 | 7 99417361 rs2003499 T C 651 | 7 99460078 rs2293256 G A 652 | 7 99573826 rs952319 C T 653 | 7 99632145 rs11734 G C 654 | 7 100855586 rs314370 T C 655 | 7 100889133 rs12666989 G C 656 | 7 101238122 rs3757458 G A 657 | 7 106954440 rs7779057 C T 658 | 7 109512654 rs10953615 A G 659 | 7 112037851 rs10428959 C T 660 | 7 116546187 rs3807989 A G 661 | 7 145488265 rs13222586 C T 662 | 7 147859561 rs13235812 A G 663 | 7 149217228 rs114143440 T C 664 | 7 150970122 rs3807375 C T 665 | 7 153181248 rs4285401 A G 666 | 7 154717614 rs12666280 T C 667 | 7 155142791 rs4146256 C A 668 | 7 155266287 rs4506162 A G 669 | 8 1295964 rs17669535 C G 670 | 8 3389886 rs147739031 A G 671 | 8 4220831 rs2407314 G C 672 | 8 4234611 rs17069667 T C 673 | 8 4252510 rs13259289 T C 674 | 8 5017650 rs10112481 G T 675 | 8 9295007 rs747751 A G 676 | 8 9400229 rs10099338 A G 677 | 8 10561793 rs7815294 G A 678 | 8 11547005 rs7820492 G A 679 | 8 11786406 rs804292 G A 680 | 8 11786406 rs804292 G A 681 | 8 13084200 rs1044011 C A 682 | 8 15808103 rs240657 G A 683 | 8 19961928 rs326 A G 684 | 8 19986711 rs12678919 A G 685 | 8 19990179 rs10503669 C A 686 | 8 20389247 rs17412740 G A 687 | 8 20405897 rs1016646 G A 688 | 8 20768810 rs2122469 G A 689 | 8 23311942 rs4278162 G A 690 | 8 23398579 rs4639518 G T 691 | 8 23428721 rs6557672 G A 692 | 8 23432023 rs7843529 G A 693 | 8 23446943 rs7822769 C A 694 | 8 23452401 rs562230222 G GA 695 | 8 23452401 rs6993786 G A 696 | 8 24942229 rs6557786 G A 697 | 8 28663041 rs189517 A G 698 | 8 37094396 rs2407103 A G 699 | 8 53253835 rs6989250 C G 700 | 8 53867614 rs6997050 C T 701 | 8 56183249 rs10958476 T C 702 | 8 65087728 rs2980003 C T 703 | 8 73244259 rs13248977 A G 704 | 8 74461713 rs16938910 C T 705 | 8 76825388 rs10957819 A G 706 | 8 89198871 rs2046315 A G 707 | 8 95383842 rs16917517 T C 708 | 8 98305511 rs11785622 C T 709 | 8 101363039 rs16867579 A C 710 | 8 114026809 rs6983475 G A 711 | 8 115801679 rs800586 G A 712 | 8 122868979 rs6470120 G A 713 | 8 125474167 rs17321515 A G 714 | 8 125478730 rs2954029 A T 715 | 8 128824482 rs6996572 C T 716 | 8 131498433 rs1395804 C T 717 | 8 138412120 rs4909788 C G 718 | 8 140564095 rs2944755 A G 719 | 9 1826401 rs10810919 C T 720 | 9 2203938 rs6475600 C T 721 | 9 3844061 rs717423 G A 722 | 9 4744743 rs409801 T C 723 | 9 4763176 rs385893 T C 724 | 9 4814948 rs13300663 G C 725 | 9 4834394 rs457287 A G 726 | 9 18769140 rs10963750 T A 727 | 9 20098713 rs16937883 A G 728 | 9 21748434 rs1414243 C G 729 | 9 21748963 rs2165409 G A 730 | 9 26694890 rs13294589 A G 731 | 9 32914591 rs12377462 C T 732 | 9 33283584 rs12336160 G T 733 | 9 37037979 rs1329568 T G 734 | 9 80356513 rs10735544 T C 735 | 9 80356978 rs1333940 A G 736 | 9 82521000 rs7043482 A C 737 | 9 86958168 rs9792548 G A 738 | 9 88196267 rs2814828 T C 739 | 9 94978992 rs3802458 A G 740 | 9 95316861 rs4647355 A G 741 | 9 96000619 rs10819695 C T 742 | 9 99472041 rs649057 C A 743 | 9 102105556 rs10989824 C T 744 | 9 106870072 rs4743034 G A 745 | 9 111541399 rs7873730 A T 746 | 9 116487060 rs7852872 C G 747 | 9 120106510 rs10984840 A G 748 | 9 121713734 rs35061590 G T 749 | 9 121725216 rs13290547 C T 750 | 9 121787363 rs10985375 C A 751 | 9 123933491 rs10818894 G A 752 | 9 126166744 rs888219 A C 753 | 9 129086757 rs7046961 C T 754 | 9 129198591 rs2417135 C T 755 | 9 133263862 rs657152 C A 756 | 9 133273983 rs507666 G A 757 | 9 133273983 rs507666 G C 758 | 9 133273983 rs507666 G T 759 | 9 133273983 rs507666 G A 760 | 9 133273983 rs507666 G C 761 | 9 133273983 rs507666 G T 762 | 9 133278431 rs651007 C T 763 | 9 133278724 rs579459 T C 764 | 9 133278724 rs579459 T C 765 | 10 2572671 rs4881003 T A 766 | 10 2577503 rs7920309 G A 767 | 10 2584969 rs2388288 A G 768 | 10 2593671 rs11251392 C T 769 | 10 2777268 rs7898310 C T 770 | 10 6061799 rs12722486 C T 771 | 10 7217484 rs2692840 C T 772 | 10 7223506 rs2692812 T C 773 | 10 7234253 rs10905124 G A 774 | 10 7238588 rs10905129 T C 775 | 10 12917026 rs281849 G T 776 | 10 17088694 rs11254363 A G 777 | 10 20521596 rs16920624 T G 778 | 10 21672935 rs16921893 C G 779 | 10 21672935 rs370104096 C CAG 780 | 10 23080492 rs722258 C T 781 | 10 26005899 rs16926523 G A 782 | 10 26445658 rs2992257 C T 783 | 10 44368720 rs266095 C T 784 | 10 46046326 rs10993994 T C 785 | 10 50250948 rs10508921 C T 786 | 10 52464217 rs1733724 A G 787 | 10 53647331 rs7077606 C T 788 | 10 55089225 rs16906916 A C 789 | 10 55339099 rs6481156 A T 790 | 10 56579481 rs1907926 T C 791 | 10 63203689 rs4379723 T C 792 | 10 63344740 rs7896518 A G 793 | 10 66838534 rs7902091 C A 794 | 10 70610968 rs10999432 T G 795 | 10 75071252 rs11001281 G A 796 | 10 75075224 rs11001286 C T 797 | 10 78271263 rs11002475 T C 798 | 10 79201071 rs2802369 C A 799 | 10 88832787 rs11202868 T G 800 | 10 89981680 rs10509586 G T 801 | 10 95032445 rs1934954 T C 802 | 10 95038791 rs1934951 C T 803 | 10 97153871 rs2784920 G T 804 | 10 98922691 rs11189867 T C 805 | 10 100170652 rs11595238 A G 806 | 10 100496440 rs9420790 G A 807 | 10 105700470 rs10509794 T C 808 | 10 105756594 rs17119461 T C 809 | 10 107598338 rs17122872 T C 810 | 10 110416131 rs7083193 T C 811 | 10 113164066 rs290481 C T 812 | 10 113525549 rs11592949 T G 813 | 10 117529516 rs149745931 G C 814 | 10 120823101 rs1254152 G A 815 | 10 121274035 rs10788160 G A 816 | 10 123825518 rs1219705 G A 817 | 10 123825647 rs1219704 G A 818 | 10 123839948 rs7900253 A G 819 | 10 123841632 rs2176488 G C 820 | 10 123849074 rs7920094 T C 821 | 10 123850295 rs6599627 T C 822 | 10 127554868 rs10734107 T G 823 | 10 128824031 rs11016498 A G 824 | 10 128824234 rs1555702 C T 825 | 10 128826574 rs942525 C T 826 | 10 129875722 rs9804200 C T 827 | 11 202856 rs11602954 G A 828 | 11 243268 rs505404 T G 829 | 11 1867725 rs11041553 G A 830 | 11 2463573 rs2074238 T C 831 | 11 2468112 rs12296050 C T 832 | 11 7675107 rs12292013 G T 833 | 11 11482681 rs7940423 G A 834 | 11 12089130 rs10831728 C T 835 | 11 12138114 rs1994318 C A 836 | 11 13974608 rs1819084 C A 837 | 11 19646892 rs714585 A G 838 | 11 20540973 rs7128311 C T 839 | 11 21543533 rs12279250 T C 840 | 11 21977599 rs11603377 A G 841 | 11 35101504 rs1559759 C A 842 | 11 35934163 rs12804535 C T 843 | 11 35935772 rs11033335 C T 844 | 11 41236781 rs10501252 T C 845 | 11 43626818 rs4237643 T G 846 | 11 44347927 rs3853291 G A 847 | 11 45229181 rs2863171 A C 848 | 11 47351874 rs2856656 T C 849 | 11 47368220 rs140541052 C G 850 | 11 47543586 rs77977823 T C 851 | 11 47552529 rs60206633 C G 852 | 11 47552529 rs60206633 C G 853 | 11 47743354 rs78261087 G A 854 | 11 47762062 rs150341456 T C 855 | 11 47796758 rs58883118 C T 856 | 11 47899441 rs141237278 G T 857 | 11 47926342 rs149327057 C T 858 | 11 48030514 rs117784795 C T 859 | 11 48042642 rs138315285 G A 860 | 11 56128269 rs2220004 G T 861 | 11 59456671 rs7943953 T G 862 | 11 59866020 rs526934 G A 863 | 11 60069719 rs2298585 C T 864 | 11 61803311 rs174547 T C 865 | 11 61803311 rs174547 T C 866 | 11 64566642 rs2078267 C T 867 | 11 75260513 rs17133858 G T 868 | 11 80666008 rs17140547 C T 869 | 11 81524108 rs2032381 G T 870 | 11 90631019 rs17257677 A G 871 | 11 103058714 rs7105967 C T 872 | 11 103076736 rs7947821 T C 873 | 11 103109865 rs12283022 A G 874 | 11 103256336 rs12294076 T C 875 | 11 110141418 rs689183 G T 876 | 11 116736721 rs1558861 C T 877 | 11 116778201 rs964184 G C 878 | 11 116781491 rs12286037 C T 879 | 11 116781491 rs12286037 C T 880 | 11 116861796 rs2075292 G T 881 | 11 118161271 rs11600901 G A 882 | 11 118246303 rs11216831 G A 883 | 11 119229196 rs4938642 G C 884 | 11 124105360 rs58908941 T G 885 | 12 1874616 rs758160 C T 886 | 12 3055757 rs12425451 C T 887 | 12 6437000 rs7958488 A T 888 | 12 7702675 rs12307997 G A 889 | 12 10204374 rs10845067 C G 890 | 12 10318451 rs12303914 A G 891 | 12 14766928 rs10846059 T C 892 | 12 20605679 rs11611208 G A 893 | 12 21224625 rs4149080 G C 894 | 12 24617944 rs17287293 A G 895 | 12 26536688 rs11048567 A G 896 | 12 40034759 rs1994090 G T 897 | 12 40072140 rs7304279 T C 898 | 12 40080345 rs4768212 C T 899 | 12 40084850 rs2708453 G T 900 | 12 40186638 rs2046932 G A 901 | 12 40227006 rs1491942 C G 902 | 12 40340400 rs34637584 G A 903 | 12 40340400 rs34637584 G A 904 | 12 54342686 rs4326844 A G 905 | 12 57415673 rs1106766 C T 906 | 12 65140844 rs6581612 C A 907 | 12 65324519 rs17178006 T G 908 | 12 65965972 rs8756 C A 909 | 12 70560684 rs17108344 C T 910 | 12 75531622 rs11610328 A G 911 | 12 75575565 rs2700521 A G 912 | 12 75597666 rs2054517 C A 913 | 12 76537466 rs73385569 C T 914 | 12 84759392 rs10779128 A G 915 | 12 93583178 rs3825199 A G 916 | 12 95663408 rs2367563 A G 917 | 12 99423064 rs7968606 C T 918 | 12 107485289 rs11113349 C T 919 | 12 107562472 rs182722816 G T 920 | 12 108373556 rs10861905 C A 921 | 12 111446804 rs3184504 T C 922 | 12 111446804 rs3184504 T C 923 | 12 111803962 rs671 G A 924 | 12 112539973 rs10850053 T C 925 | 12 114357638 rs3825214 G A 926 | 12 114357638 rs3825214 G A 927 | 12 114357638 rs3825214 G A 928 | 12 114656455 rs11067228 A G 929 | 12 115762355 rs780886 G A 930 | 12 116889787 rs7294919 T C 931 | 12 116889787 rs7294919 T C 932 | 12 118152057 rs795484 T C 933 | 12 118455443 rs11613092 C T 934 | 12 119614124 rs11064845 G C 935 | 12 119616268 rs7310536 G C 936 | 12 119668571 rs6490267 G T 937 | 12 119678689 rs278151 A G 938 | 12 119681378 rs4213 T G 939 | 12 120442631 rs17431357 C T 940 | 12 120737721 rs2014355 T C 941 | 12 120983004 rs1183910 G A 942 | 12 120987058 rs7310409 A G 943 | 12 126070733 rs17548327 C T 944 | 12 128278196 rs12302898 G A 945 | 12 128297477 rs11059635 C T 946 | 12 129745862 rs7979367 G T 947 | 12 130578355 rs8181764 C A 948 | 12 132841216 rs3741489 T C 949 | 12 132856158 rs2062162 C T 950 | 13 20468947 rs4573790 G A 951 | 13 21301957 rs9788333 C G 952 | 13 23348323 rs41360252 A G 953 | 13 26841536 rs9319321 A T 954 | 13 66039055 rs17837241 C A 955 | 13 74357704 rs1576704 A G 956 | 13 76283338 rs4286013 A G 957 | 13 76310191 rs2777732 G A 958 | 13 85043423 rs1932913 T C 959 | 13 85044947 rs10459348 C T 960 | 13 93226778 rs7985891 A G 961 | 13 94800817 rs9561694 C T 962 | 13 96856485 rs16953622 C T 963 | 13 98048363 rs16954776 A G 964 | 13 99866380 rs41281112 C T 965 | 13 102027776 rs11617740 G A 966 | 13 103534569 rs16962638 A G 967 | 13 105049385 rs3935930 G A 968 | 13 105256910 rs9586776 G T 969 | 13 105273203 rs9558521 T C 970 | 13 106686453 rs1330950 C A 971 | 13 110166251 rs3742207 T G 972 | 14 21302522 rs17792599 A G 973 | 14 22337794 rs17793886 G C 974 | 14 22382738 rs11623006 T A 975 | 14 23392602 rs365990 A G 976 | 14 23396676 rs452036 G A 977 | 14 23396676 rs452036 G A 978 | 14 23507801 rs223116 A G 979 | 14 28562426 rs2093075 G C 980 | 14 31212021 rs6571396 G T 981 | 14 41283386 rs1622804 G A 982 | 14 41283466 rs1782156 T A 983 | 14 41284761 rs1779516 A G 984 | 14 41304538 rs17678541 T C 985 | 14 41318874 rs1431032 G A 986 | 14 41348779 rs8011741 A G 987 | 14 42077816 rs1684696 G A 988 | 14 42115233 rs1684675 A C 989 | 14 42136326 rs10146319 A G 990 | 14 42202542 rs6572138 C G 991 | 14 44154057 rs10147827 A G 992 | 14 47405354 rs17118552 A G 993 | 14 55017068 rs28489712 A C 994 | 14 62889535 rs10136789 T C 995 | 14 62960541 rs4086351 C A 996 | 14 70035333 rs17175227 G A 997 | 14 70896314 rs2189807 G A 998 | 14 70917131 rs2810073 T C 999 | 14 70967194 rs2810098 A G 1000 | 14 70974807 rs17108804 C T 1001 | 14 70997667 rs8007026 G C 1002 | 14 71031077 rs2158997 G C 1003 | 14 71138551 rs221899 A G 1004 | 14 71240916 rs1000448 G A 1005 | 14 71242638 rs17109189 C A 1006 | 14 77954715 rs4899685 G A 1007 | 14 81871321 rs1959122 C T 1008 | 14 89578385 rs10142749 C A 1009 | 14 89930230 rs7147996 T A 1010 | 14 91960878 rs7153027 A C 1011 | 14 96704738 rs17244419 C T 1012 | 14 100159565 rs7157599 C T 1013 | 14 103106478 rs944002 A G 1014 | 15 26043247 rs6576507 T C 1015 | 15 26043247 rs6576507 T C 1016 | 15 28120472 rs12913832 A G 1017 | 15 28285036 rs1667394 C T 1018 | 15 28285036 rs1667394 C T 1019 | 15 31042159 rs17815774 C T 1020 | 15 36057645 rs1898036 T C 1021 | 15 39281334 rs12595668 A G 1022 | 15 39284359 rs746265 A C 1023 | 15 41579294 rs12259 A G 1024 | 15 42391589 rs2412710 G A 1025 | 15 43953733 rs2929282 A T 1026 | 15 45207849 rs765787 A G 1027 | 15 48099968 rs1834640 A G 1028 | 15 49123499 rs16962067 T C 1029 | 15 49242505 rs16962177 T C 1030 | 15 49270849 rs16962244 A G 1031 | 15 49276420 rs16962257 A T 1032 | 15 51221532 rs6493487 G A 1033 | 15 51253257 rs12907866 A G 1034 | 15 52987181 rs719714 A G 1035 | 15 54430137 rs17237606 A G 1036 | 15 55657884 rs11071200 C A 1037 | 15 60645203 rs339978 C T 1038 | 15 69858112 rs379468 T G 1039 | 15 70304635 rs2916179 C G 1040 | 15 71131670 rs12904863 T C 1041 | 15 73884216 rs16958445 G A 1042 | 15 73927241 rs3825942 G A 1043 | 15 73928957 rs1550437 C T 1044 | 15 73931426 rs1992314 C G 1045 | 15 73934799 rs12594472 A T 1046 | 15 73936123 rs893816 C T 1047 | 15 73936854 rs893818 G A 1048 | 15 73939008 rs16958494 C T 1049 | 15 73951556 rs12441138 G A 1050 | 15 78535289 rs28675338 C T 1051 | 15 78535289 rs58709975 C CT 1052 | 15 78540881 rs12901682 A C 1053 | 15 84545426 rs3883013 T C 1054 | 15 84644014 rs34069323 T C 1055 | 15 86311359 rs10152811 A C 1056 | 15 86441009 rs16977195 A G 1057 | 15 86520858 rs12591257 A C 1058 | 15 92387181 rs17702901 G A 1059 | 15 100246066 rs4533267 A G 1060 | 16 2395479 rs6600203 T G 1061 | 16 2396020 rs4497687 G A 1062 | 16 2434782 rs8052046 A C 1063 | 16 2438692 rs12926827 T C 1064 | 16 2449010 rs8060813 T C 1065 | 16 2452640 rs1136062 T C 1066 | 16 3459056 rs40363 G A 1067 | 16 7114218 rs1478693 T G 1068 | 16 8453220 rs8045405 G A 1069 | 16 10094203 rs7203315 G T 1070 | 16 11607793 rs13333308 T C 1071 | 16 28086594 rs8051871 A G 1072 | 16 30525595 rs61735343 T C 1073 | 16 53735765 rs6499640 G A 1074 | 16 53735765 rs6499640 G A 1075 | 16 53779455 rs17817449 T G 1076 | 16 53782363 rs8050136 C A 1077 | 16 53782363 rs8050136 C A 1078 | 16 53782363 rs8050136 C A 1079 | 16 53786615 rs9939609 T A 1080 | 16 53808996 rs12149832 G A 1081 | 16 56951227 rs9989419 A G 1082 | 16 56959412 rs3764261 C A 1083 | 16 56971567 rs1532624 C A 1084 | 16 58533334 rs37062 A G 1085 | 16 78153241 rs1079572 G A 1086 | 16 79536241 rs821232 A C 1087 | 16 80158708 rs8060581 G C 1088 | 16 82612728 rs3844412 A G 1089 | 16 84954073 rs2326458 C A 1090 | 16 85873010 rs11648716 A G 1091 | 16 85927956 rs17444745 G A 1092 | 16 87331044 rs1062746 T C 1093 | 16 89919709 rs1805007 C T 1094 | 17 5885026 rs189869876 G T 1095 | 17 7618597 rs12150660 G T 1096 | 17 7631360 rs6258 C T 1097 | 17 30920697 rs3760318 G A 1098 | 17 32569437 rs225212 C T 1099 | 17 37738049 rs4430796 G A 1100 | 17 46003698 rs8070723 A G 1101 | 17 46109891 rs9303525 A G 1102 | 17 63488670 rs4343 G A 1103 | 17 66870338 rs1120577 A G 1104 | 17 70263305 rs623011 A G 1105 | 17 70980274 rs6501431 C T 1106 | 17 71100667 rs12449659 T C 1107 | 17 73604106 rs790092 T C 1108 | 17 74703694 rs10512597 T C 1109 | 17 76313480 rs2279055 C G 1110 | 17 77317253 rs4788985 A G 1111 | 17 78114437 rs2613514 A G 1112 | 18 2377089 rs7227539 A G 1113 | 18 5978932 rs1539808 C T 1114 | 18 6666418 rs7505079 A G 1115 | 18 8931654 rs7244245 T C 1116 | 18 11064410 rs12455924 C T 1117 | 18 11987273 rs7506045 C T 1118 | 18 23144364 rs4800148 G A 1119 | 18 27221337 rs11660384 C T 1120 | 18 27226772 rs17712675 G C 1121 | 18 27227407 rs7228535 A T 1122 | 18 33840046 rs1013696 T C 1123 | 18 37634043 rs2162440 A G 1124 | 18 41188245 rs12971263 T C 1125 | 18 42857686 rs16977065 C T 1126 | 18 52991406 rs7504990 T C 1127 | 18 55543071 rs613872 G T 1128 | 18 57218862 rs77512994 T C 1129 | 18 65231430 rs637644 A G 1130 | 18 77023179 rs11663697 G T 1131 | 18 77655668 rs517543 C T 1132 | 19 5839735 rs3760776 G A 1133 | 19 7359642 rs6603109 A T 1134 | 19 8116153 rs12460407 T C 1135 | 19 10199716 rs2116940 A G 1136 | 19 10284116 rs1799969 G A 1137 | 19 10284116 rs1799969 G A 1138 | 19 10285007 rs5498 A G 1139 | 19 10285007 rs5498 A G 1140 | 19 10286562 rs281437 C T 1141 | 19 11089332 rs17249141 C T 1142 | 19 11089332 rs17249141 C T 1143 | 19 11091630 rs6511720 G T 1144 | 19 11091630 rs6511720 G T 1145 | 19 11091630 rs6511720 G T 1146 | 19 12035555 rs3745672 T C 1147 | 19 15661604 rs7258240 G A 1148 | 19 16074749 rs8109288 G A 1149 | 19 16074749 rs8109288 G A 1150 | 19 17244016 rs4808611 C T 1151 | 19 17248726 rs35686037 C T 1152 | 19 17260759 rs12982178 T C 1153 | 19 17268749 rs10424178 C T 1154 | 19 17278839 rs10406920 C T 1155 | 19 17278895 rs8170 G A 1156 | 19 17479472 rs11666579 G T 1157 | 19 19296909 rs10401969 T C 1158 | 19 19547663 rs16996148 G T 1159 | 19 29245435 rs11083866 G A 1160 | 19 39252525 rs8099917 T G 1161 | 19 40848628 rs1801272 A T 1162 | 19 44900155 rs1160985 C T 1163 | 19 44908822 rs7412 C T 1164 | 19 44908822 rs7412 C T 1165 | 19 44911194 rs439401 T C 1166 | 19 44912383 rs445925 G A 1167 | 19 44919689 rs4420638 A G 1168 | 19 44919689 rs4420638 A G 1169 | 19 44919689 rs4420638 A G 1170 | 19 44919689 rs4420638 A G 1171 | 19 44919689 rs4420638 A G 1172 | 19 46297176 rs3826795 G A 1173 | 19 48024325 rs3936340 C T 1174 | 19 48703374 rs1047781 A T 1175 | 19 48703728 rs602662 G A 1176 | 19 50858501 rs17632542 T C 1177 | 19 51581583 rs1543922 C T 1178 | 19 55368504 rs1126757 C T 1179 | 20 945754 rs502716 G A 1180 | 20 945754 rs502716 G A 1181 | 20 2774842 rs6138892 T C 1182 | 20 3204477 rs11697186 A T 1183 | 20 3207087 rs6139030 T C 1184 | 20 5968888 rs4815879 G A 1185 | 20 6601515 rs6140038 C T 1186 | 20 10185285 rs883382 A G 1187 | 20 10202869 rs6039763 A G 1188 | 20 10216438 rs1889189 T C 1189 | 20 10218306 rs6039769 A C 1190 | 20 12846351 rs1321936 G A 1191 | 20 20980651 rs4813407 C A 1192 | 20 21681879 rs6035924 T G 1193 | 20 21695033 rs6047583 G A 1194 | 20 31316574 rs6141273 G A 1195 | 20 33180849 rs6120141 T C 1196 | 20 33210631 rs17124372 T C 1197 | 20 34957813 rs17310467 A G 1198 | 20 43362961 rs2010809 C T 1199 | 20 46649530 rs1004571 A G 1200 | 20 46659814 rs6066043 G A 1201 | 20 46678289 rs4810537 A G 1202 | 20 47051863 rs878131 A G 1203 | 20 47205635 rs7262634 T C 1204 | 20 48763274 rs2426087 G A 1205 | 20 49365591 rs237450 G A 1206 | 20 49788631 rs663890 G T 1207 | 20 49807219 rs4297943 G A 1208 | 20 51584243 rs1546920 C T 1209 | 20 51584678 rs6096487 G A 1210 | 20 58987047 rs2273359 C G 1211 | 20 60323151 rs6027511 T C 1212 | 20 61060739 rs6129028 A G 1213 | 20 63264568 rs1406961 A C 1214 | 21 25210076 rs2829643 T G 1215 | 21 25214010 rs2829644 A G 1216 | 21 25252947 rs2040271 T C 1217 | 21 25253663 rs2829662 C T 1218 | 21 25254259 rs2829664 C G 1219 | 21 34507774 rs727957 G T 1220 | 21 34835765 rs9976946 C T 1221 | 21 39906377 rs2244189 C T 1222 | 21 42023389 rs2839440 C T 1223 | 21 45704264 rs4819143 G A 1224 | 22 24603137 rs2073398 C G 1225 | 22 26147321 rs134748 G T 1226 | 22 26301229 rs591044 T C 1227 | 22 27782960 rs12158991 G A 1228 | 22 30757289 rs9609078 G A 1229 | 22 31833663 rs5994434 G A 1230 | 22 36121884 rs1476029 C T 1231 | 22 37357959 rs739189 C A 1232 | 22 42292718 rs17002948 T G 1233 | 22 43928847 rs738409 C G 1234 | X 22116540 rs5951698 A G 1235 | X 22873960 rs5925696 A G 1236 | X 25835497 rs5944185 T C 1237 | X 28214936 rs5971305 G A 1238 | X 33765946 rs5928363 A T 1239 | X 37995474 rs872690 T C 1240 | X 41634652 rs5918213 C T 1241 | X 65147139 rs7064929 G A 1242 | X 66386851 rs5965182 T A 1243 | X 67343176 rs2497938 T C 1244 | X 143740311 rs192138826 G T 1245 | X 143743931 rs190796883 A C 1246 | X 143744802 rs141261373 C T 1247 | X 143747221 rs145189928 T G 1248 | X 143749380 rs149912409 T C 1249 | X 143755753 rs138067008 G A 1250 | X 143759024 rs139956886 C T 1251 | X 144281548 rs6637197 C T 1252 | -------------------------------------------------------------------------------- /intervardb/ext.variants.hg19: -------------------------------------------------------------------------------- 1 | X 153763492 T C 2 | X 153764217 C T 3 | 1 94473807 C T 4 | 1 94517254 C G 5 | 1 159174683 T C 6 | 1 169519049 T C 7 | 1 171076966 G A 8 | 3 15686693 G C 9 | 3 39307162 G A 10 | 3 39307256 C T 11 | 5 1254594 C T 12 | 5 1293767 G A 13 | 5 147207678 T C 14 | 6 32007887 G T 15 | 7 117149143 C T 16 | 7 117199645 TCT - 17 | 7 150696111 T G 18 | 8 90983442 TTTGT - 19 | 9 34646573 CAGT - 20 | 9 120475302 A G 21 | 11 5248232 T A 22 | 11 5248233 C T 23 | 11 89017961 G A 24 | 12 53298582 C A 25 | 12 112241766 G A 26 | 13 20763612 C T 27 | 13 20763686 C - 28 | 13 32907421 A - 29 | 14 94844947 C T 30 | 14 94847262 T A 31 | 15 80472526 C T 32 | 16 29825015 - C 33 | 16 69745145 G A 34 | 17 32579788 A G 35 | 17 41243789 AGAC - 36 | 18 29178618 G A 37 | 19 41354533 A T 38 | 19 45411941 T C 39 | 19 45412079 C T 40 | 22 18901004 C T 41 | 22 51063477 T C 42 | -------------------------------------------------------------------------------- /intervardb/ext.variants.hg38: -------------------------------------------------------------------------------- 1 | chrX 154535277 T C 2 | chrX 154536002 C T 3 | chr1 94008251 C T 4 | chr1 94051698 C G 5 | chr1 159204893 T C 6 | chr1 169549811 T C 7 | chr1 171107825 G A 8 | chr3 15645186 G C 9 | chr3 39265671 G A 10 | chr3 39265765 C T 11 | chr5 1254479 C T 12 | chr5 1293652 G A 13 | chr5 147828115 T C 14 | chr6 32040110 G T 15 | chr7 117509089 C T 16 | chr7 117559591 TCT - 17 | chr7 150999023 T G 18 | chr8 89971214 TTTGT - 19 | chr9 34646576 CAGT - 20 | chr9 117713024 A G 21 | chr11 5227002 T A 22 | chr11 5227003 C T 23 | chr11 89284793 G A 24 | chr12 52904798 C A 25 | chr12 111803962 G A 26 | chr13 20189473 C T 27 | chr13 20189547 C - 28 | chr13 32333284 A - 29 | chr14 94378610 C T 30 | chr14 94380925 T A 31 | chr15 80180184 C T 32 | chr16 29813694 - C 33 | chr16 69711242 G A 34 | chr17 34252769 A G 35 | chr17 43091772 AGAC - 36 | chr18 31598655 G A 37 | chr19 40848628 A T 38 | chr19 44908684 T C 39 | chr19 44908822 C T 40 | chr22 18913491 C T 41 | chr22 50625049 T C 42 | -------------------------------------------------------------------------------- /intervardb/mim_adultonset.txt: -------------------------------------------------------------------------------- 1 | 100690 2 | 102565 3 | 102610 4 | 102700 5 | 102770 6 | 103200 7 | 103220 8 | 104000 9 | 104170 10 | 104260 11 | 104311 12 | 105210 13 | 105400 14 | 105550 15 | 106150 16 | 106165 17 | 106180 18 | 107741 19 | 108650 20 | 109150 21 | 112261 22 | 114100 23 | 114220 24 | 114240 25 | 114250 26 | 115310 27 | 117000 28 | 117210 29 | 118420 30 | 120090 31 | 120130 32 | 120220 33 | 120240 34 | 120250 35 | 120328 36 | 120330 37 | 120520 38 | 123590 39 | 123889 40 | 124050 41 | 125310 42 | 125370 43 | 125660 44 | 125853 45 | 126200 46 | 126375 47 | 126700 48 | 127550 49 | 128100 50 | 129190 51 | 131100 52 | 131340 53 | 131370 54 | 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613908 751 | 614065 752 | 614116 753 | 614153 754 | 614154 755 | 614186 756 | 614203 757 | 614229 758 | 614245 759 | 614251 760 | 614260 761 | 614265 762 | 614297 763 | 614298 764 | 614302 765 | 614307 766 | 614350 767 | 614370 768 | 614519 769 | 614575 770 | 614588 771 | 614649 772 | 614675 773 | 614696 774 | 614706 775 | 614742 776 | 614743 777 | 614860 778 | 614881 779 | 614884 780 | 614895 781 | 614937 782 | 614972 783 | 615008 784 | 615034 785 | 615048 786 | 615054 787 | 615073 788 | 615076 789 | 615127 790 | 615156 791 | 615157 792 | 615325 793 | 615362 794 | 615511 795 | 615515 796 | 615530 797 | 615533 798 | 615551 799 | 615552 800 | 615651 801 | 615670 802 | 615710 803 | 615768 804 | 615848 805 | 615860 806 | 615883 807 | 615903 808 | 615911 809 | 615945 810 | 615957 811 | 616002 812 | 616013 813 | 616033 814 | 616039 815 | 616044 816 | 616053 817 | 616231 818 | 616280 819 | 616282 820 | 616329 821 | 616361 822 | 616371 823 | 616373 824 | 616410 825 | 616413 826 | 616437 827 | 616439 828 | 616479 829 | 616491 830 | 616502 831 | 616541 832 | 616568 833 | 616604 834 | 616680 835 | 616833 836 | 616840 837 | 616842 838 | 616871 839 | 616907 840 | 616948 841 | 617004 842 | 617017 843 | 617018 844 | 617055 845 | 617069 846 | 617070 847 | -------------------------------------------------------------------------------- /mkdocs.yml: -------------------------------------------------------------------------------- 1 | site_name: InterVar Documentation 2 | site_url: http://intervar.openbioinformatics.org/ 3 | repo_url: http://github.com/WGLab/doc-ANNOVAR/ 4 | repo_name: GitHub 5 | site_description: Documentation for the InterVar software 6 | site_author: Quan Li, Kai Wang 7 | site_favicon: favicon.ico 8 | copyright: 2015-2015 InterVar 9 | google_analytics: ['UA-48623707-1', 'intervar.openbioinformatics.org'] 10 | 11 | docs_dir: docs/ 12 | include_search: true 13 | 14 | pages: 15 | - InterVar: index.md 16 | - User Guide: 17 | - Download InterVar: user-guide/download.md 18 | - Quick Start-Up Guide: user-guide/startup.md 19 | - Manual: user-guide/manual.md 20 | - Misc: 21 | - FAQ: misc/faq.md 22 | - What is New: misc/whatsnew.md 23 | - Version History: misc/version_history.md 24 | - Credit: misc/credit.md 25 | - How to Contribute: misc/contributing.md 26 | --------------------------------------------------------------------------------