├── .gitignore ├── LICENSE ├── README.md ├── _config.yml ├── example_data └── HTT_repeat_region.bed ├── images ├── HG002.1-7923034-7923187-TATTG.hist.png ├── HTT.chr4-3074876-3074933-CAG.hist.png ├── HTT.chr4-3074946-3074966-CCG.hist.png ├── HTT.hist2d.png ├── HTT.scatter.png ├── classify_reads.jpg └── repeat_size_estimation.jpg ├── setup.py └── src └── NanoRepeat ├── __init__.py ├── nanoRepeat-joint.py ├── nanoRepeat.py ├── nanoRepeat_bam.py ├── paf.py ├── repeat_region.py ├── split_alleles.py └── tk.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WGLab/NanoRepeat/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WGLab/NanoRepeat/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: 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