├── LICENSE ├── PhenoBCBERT_Finetune.ipynb ├── README.md ├── hpo_database.json ├── inference.py ├── model ├── falcon │ └── README.md ├── gpt-j │ ├── Finetune_gpt_j_6B_8bit_biolark.ipynb │ └── README.md ├── llama │ ├── README.md │ ├── adapter_config.json │ ├── adapter_model.bin │ └── peft_config.md └── llama2 │ └── README.md ├── run_phenogpt.ipynb └── testing ├── input ├── sample1.txt └── sample2.txt └── output ├── sample1_phenogpt_ref.txt └── sample2_phenogpt_ref.txt /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WGLab/PhenoGPT/HEAD/LICENSE -------------------------------------------------------------------------------- /PhenoBCBERT_Finetune.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WGLab/PhenoGPT/HEAD/PhenoBCBERT_Finetune.ipynb -------------------------------------------------------------------------------- /README.md: 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https://raw.githubusercontent.com/WGLab/PhenoGPT/HEAD/testing/output/sample1_phenogpt_ref.txt -------------------------------------------------------------------------------- /testing/output/sample2_phenogpt_ref.txt: -------------------------------------------------------------------------------- 1 | Popliteal Pterygium HP:0009756 2 | --------------------------------------------------------------------------------