├── .github └── CODEOWNERS ├── CITATION.cff ├── CODE_OF_CONDUCT.md ├── LICENSE ├── README.md ├── collaboratory-epiparameter-community.Rproj ├── docs ├── .nojekyll ├── _navbar.md ├── _sidebar.md ├── images │ ├── Report.png │ ├── Sep2024Status.png │ ├── TWG.png │ ├── collab-logo-full.svg │ └── favicon.ico ├── index.html └── pages │ ├── about.html │ ├── about.md │ ├── code_of_conduct.md │ ├── community.html │ ├── community.md │ ├── images │ ├── external-link.png │ ├── pdf-icon-80x80.png │ └── workstreams.png │ ├── news.html │ ├── news.md │ ├── resources.html │ └── resources.md └── materials ├── background ├── Imperial_College_London_Protocol_for_the_systematic_review_of_transmission_and_modelling_parameters_of_nine_WHO_blue_print_priority_pathogens.pdf ├── MPOX_EpiParam_Community.pdf ├── WHO_Global_Epi_Parameter_Concept_Note.pdf ├── WhodoesWhat.png └── Workwithus.pdf ├── meetings ├── INF_1_December2024 │ ├── Best_practices_and_epi_t_kit.pdf │ ├── PERG_2024_roundup.pdf │ └── VirtualTWG_18December2024.pdf ├── TWG10_EpiScanner_Jan2025 │ └── Flavio_EpiScanner.pdf ├── TWG11_grEPI_MVP_Prototype_March2025 │ └── grEPI_MVP_Prototype.pdf ├── TWG12_Arboviral_EIP_April2025 │ └── Hartner_WHO_External_Apr2025.pdf ├── TWG13_Nextstrain_May2025 │ └── Nextstrain_WHO_EpiParam.pdf ├── TWG14_Mpox_June2025 │ ├── grEPI_Mpox_Dashboard.pdf │ ├── grEPI_mpox.R │ ├── grEPI_mpox.Rmd │ └── grEPI_mpox.html ├── TWG1_EpiRepo_quality_April232023 │ ├── Epiverse_Epiparameter_Lambert.pdf │ ├── Global.health_Federated Analytics_Kraemer.pdf │ └── Imperial_SystematicReview_Cori.pdf ├── TWG2_Epi_datamodel_June202023 │ ├── TWG-Epi_database-June_20_2023_publicpdf.pdf │ └── TWG2_report_June2023.pdf ├── TWG3_EpiReview_Feb202024 │ ├── Introduction_to_epireview_BathiaFeb2024.pdf │ ├── TWG_PERG_and_Epi_Review_Package_NdumbiFeb_20_2024.pdf │ └── WHOPath_systematicrev_CoriFeb_2024.pdf ├── TWG4_AIandParameters_March252024 │ ├── AI_Webinar_Waddell_2024_03_25.pdf │ ├── ARIA_WP4_Concept_Sandner_March2024.pdf │ ├── CliZod_WHO_Webinar_Vallee_March_2024.pdf │ └── TWG_5_AI_and_Epi_Parameter_PHAC_CERN_Clizod_March_25_2024.pdf ├── TWG5_LassaFever_Ebola_May12024 │ ├── Ebola_PERG_April2024.pdf │ └── LassaFever_PERG_April2024.pdf ├── TWG6_GREP_Hackathon_May14162024 │ ├── EpiDataExtraction_LW.pdf │ ├── EpiParameterWorkshop_Patricia.pdf │ ├── EpiParameter_GREP_Workshop_Report_Short_FINAL.pdf │ ├── EpiReview_Cori.pdf │ ├── Epiparameter_Lambert.pdf │ ├── Epiverse_Kucharski.pdf │ ├── OneSlideCollaboratoryApril2024_Julia.pdf │ └── WorkshopDatabaseSchema_Campbell.pdf ├── TWG7_Accurate_Extraction_June202024 │ └── MPPolak_data_extraction_LLMs_June20.pdf ├── TWG9_November_Quality_Nov2024 │ └── 241128_EpiParameterTWG_GuidelineScopingReview.pdf └── meetings.txt └── workstreams-document ├── workstream-1 └── workstream-1.txt ├── workstream-2 └── workstream-2.txt ├── workstream-3 └── workstream-3.txt ├── workstream-4 └── workstream-4.txt └── workstream-5 └── workstream-5.txt /.github/CODEOWNERS: 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