├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ ├── check-bioc.yml │ ├── feishu.yml │ └── pr-commands.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── athena.R ├── available.R ├── class-FAERS.R ├── combine.R ├── counts.R ├── dedup.R ├── download.R ├── faers-package.R ├── faers.R ├── fda_drugs.R ├── import-standalone-assert.R ├── import-standalone-cli.R ├── import-standalone-obj-type.R ├── import-standalone-pkg.R ├── load.R ├── meddra.R ├── merge.R ├── meta.R ├── methods-FAERS.R ├── parse.R ├── period.R ├── phv_.R ├── phv_ebgm.R ├── rxnorm.R ├── sample.R ├── signal.R ├── standardize.R ├── unify.R ├── utils-assert.R ├── utils-file.R ├── utils-str.R └── utils.R ├── README.Rmd ├── README.html ├── README.md ├── inst ├── extdata │ ├── aers_ascii_2004q1.zip │ ├── faers_ascii_2017q2.zip │ ├── faers_meta_data.rds │ ├── irAEs.docx │ ├── irAEs.rds │ └── standardized_data.rds └── script │ ├── example.R │ └── irAEs.R ├── man ├── FAERS-class.Rd ├── FAERS-methods.Rd ├── MedDRA-class.Rd ├── athena.Rd ├── faers-package.Rd ├── faers.Rd ├── faers_available.Rd ├── faers_before_period.Rd ├── faers_clearcache.Rd ├── faers_combine.Rd ├── faers_counts.Rd ├── faers_dedup.Rd ├── faers_download.Rd ├── faers_load.Rd ├── faers_merge.Rd ├── faers_meta.Rd ├── faers_parse.Rd ├── faers_phv_signal.Rd ├── faers_standardize.Rd ├── fda_drugs.Rd └── phv_signal.Rd ├── tests ├── testthat.R └── testthat │ ├── test_class.R │ ├── test_combine.R │ ├── test_counts.R │ ├── test_dedup.R │ ├── test_faers.R │ ├── test_load.R │ ├── test_meddra.R │ ├── test_merge.R │ ├── test_meta.R │ ├── test_methods.R │ ├── test_parse.R │ ├── test_signal.R │ ├── test_standardize.R │ └── test_utils.R └── vignettes ├── .gitignore └── faers.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WangLabCSU/faers/HEAD/.Rbuildignore 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