├── .gitignore ├── README.md ├── VirHostMatcher-Net.py ├── __init__.py ├── __pycache__ └── predictor.cpython-36.pyc ├── cmd.sh ├── genome_list ├── hmp_host_list.txt └── marine_host_list.txt ├── predictor.py ├── setup.py ├── src ├── Variables.py ├── __init__.py ├── __pycache__ │ ├── Variables.cpython-36.pyc │ ├── __init__.cpython-36.pyc │ ├── blast.cpython-36.pyc │ ├── crispr.cpython-36.pyc │ ├── neighborhood.cpython-36.pyc │ ├── s2star.cpython-36.pyc │ └── wish.cpython-36.pyc ├── args.py ├── blast.py ├── crispr.py ├── neighborhood.py ├── s2star.py ├── tools │ ├── WIsH.cpp │ ├── WIsH.h │ ├── ctpl_stl.h │ ├── kmer_count_multithreads.h │ ├── mm.cpp │ ├── mm.h │ └── tools.cpp └── wish.py └── test ├── VGs ├── DQ517338.fasta ├── JX878496.fasta ├── KC821607.fasta └── KF669661.fasta └── mVCs ├── SRS011140_Baylor_scaffold_50070.fasta ├── SRS011452_WUGC_scaffold_3640.fasta ├── SRS014271_WUGC_scaffold_25970.fasta ├── SRS014470_WUGC_scaffold_48890.fasta ├── SRS014573_WUGC_scaffold_52447.fasta ├── SRS014692_WUGC_scaffold_15540.fasta ├── SRS015065_WUGC_scaffold_43040.fasta ├── SRS016043_WUGC_scaffold_58100.fasta ├── SRS016086_WUGC_scaffold_24100.fasta ├── SRS016360_Baylor_scaffold_69490.fasta ├── SRS016575_Baylor_scaffold_66457.fasta ├── SRS016746_Baylor_scaffold_9887.fasta ├── SRS017713_Baylor_scaffold_31730.fasta ├── SRS018145_Baylor_scaffold_48460.fasta ├── SRS018591_WUGC_scaffold_4777.fasta ├── SRS018656_WUGC_scaffold_13330.fasta ├── SRS018739_WUGC_scaffold_56127.fasta ├── SRS018791_WUGC_scaffold_40500.fasta ├── SRS019030_Baylor_scaffold_4207.fasta ├── SRS019073_WUGC_scaffold_16647.fasta ├── SRS019128_WUGC_scaffold_25110.fasta ├── SRS019219_WUGC_scaffold_74087.fasta ├── SRS019607_WUGC_scaffold_13340.fasta ├── SRS019894_WUGC_scaffold_55680.fasta ├── SRS019974_Baylor_scaffold_52037.fasta ├── SRS021496_Baylor_scaffold_69240.fasta ├── SRS021496_Baylor_scaffold_86367.fasta ├── SRS021954_Baylor_scaffold_50357.fasta ├── SRS022143_LANL_scaffold_92267.fasta ├── SRS022602_Baylor_scaffold_3690.fasta ├── SRS023352_LANL_scaffold_83757.fasta ├── SRS023352_LANL_scaffold_83997.fasta ├── SRS023352_LANL_scaffold_84250.fasta ├── SRS023595_Baylor_scaffold_100197.fasta ├── SRS024015_Baylor_scaffold_890.fasta ├── SRS024075_LANL_scaffold_2650.fasta ├── SRS024132_Baylor_scaffold_13277.fasta ├── SRS024140_LANL_scaffold_4700.fasta ├── SRS043663_LANL_scaffold_41467.fasta ├── SRS045127_LANL_scaffold_39500.fasta ├── SRS045645_Baylor_scaffold_13177.fasta ├── SRS045715_LANL_scaffold_25870.fasta ├── SRS049147_LANL_scaffold_64187.fasta ├── SRS050244_LANL_scaffold_28980.fasta ├── SRS050752_LANL_scaffold_33630.fasta ├── SRS051031_LANL_scaffold_75870.fasta ├── SRS051244_LANL_scaffold_7817.fasta ├── SRS057205_LANL_scaffold_13380.fasta ├── SRS057692_LANL_scaffold_29650.fasta ├── SRS058053_LANL_scaffold_6657.fasta ├── SRS062878_LANL_scaffold_84527.fasta ├── SRS062878_LANL_scaffold_84757.fasta ├── SRS062878_LANL_scaffold_84837.fasta ├── SRS064774_LANL_scaffold_67187.fasta 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