├── .gitignore ├── .travis.yml ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── DEVELOPMENT_GUIDE.md ├── LICENSE ├── PULL_REQUEST_TEMPLATE.md ├── README.md ├── docs ├── Makefile └── source │ ├── conf.py │ ├── create-network.rst │ ├── global-analysis.rst │ ├── index.rst │ ├── introduction.rst │ ├── local-analysis.rst │ ├── plotting.rst │ ├── sc-matrices.rst │ ├── scona.datasets.NSPN_WhitakerVertes_PNAS2016.rst │ ├── scona.datasets.rst │ ├── scona.rst │ ├── scona.scripts.rst │ └── scona.wrappers.rst ├── push.sh ├── requirements.txt ├── scona ├── __init__.py ├── bits_and_bobs │ ├── Corr_pathology_SummaryFig_Cost_10.png │ ├── NSPN_BehaviouralGraphs.ipynb │ └── visualising_behavioural_networks.py ├── classes.py ├── datasets │ ├── NSPN_WhitakerVertes_PNAS2016 │ │ ├── 500.centroids.txt │ │ ├── 500.names.txt │ │ ├── PARC_500aparc_thickness_behavmerge.csv │ │ └── __init__.py │ └── __init__.py ├── graph_measures.py ├── make_corr_matrices.py ├── make_figures.py ├── make_graphs.py ├── nilearn_plotting.py ├── permute_groups.py ├── scripts │ ├── __init__.py │ ├── make_figures.py │ ├── useful_functions.py │ └── visualisation_commands.py ├── stats_functions.py ├── visualisations.py ├── visualisations_helpers.py └── wrappers │ ├── __init__.py │ ├── corrmat_from_regionalmeasures.py │ └── network_analysis_from_corrmat.py ├── setup.py ├── tests ├── .fixture_hash ├── __init__.py ├── graph_measures_test.py ├── make_corr_matrices_test.py ├── make_graphs_test.py ├── regression_test.py └── write_fixtures.py └── tutorials ├── global_measures_viz.ipynb ├── global_network_viz.ipynb ├── interactive_viz_tutorial.ipynb ├── introductory_tutorial.ipynb ├── prepare_data.ipynb └── tutorial.ipynb /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WhitakerLab/scona/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: 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