├── .gitignore ├── CHANGELOG.md ├── CITATION ├── LICENSE ├── README.md ├── dataset ├── .gitignore ├── README.md ├── covidontheweb-definitions.ttl ├── covidontheweb-metadata-dataset.ttl ├── covidontheweb-metadata-dataset_tpl.ttl ├── examples │ ├── cord19-akg-example.ttl │ └── cord19-nekg-example.ttl └── substitute-placeholders.sh ├── doc ├── 01-data-modeling.md ├── ACTA.png ├── R4.JPG ├── R7.JPG └── mgexplorer-1.png ├── notebooks ├── IPython notebook with query examples for Covid-on-the-Web dataset.ipynb ├── Jupyter R notebook with query examples for Covid-on-the-Web dataset.ipynb ├── R notebook with query examples for Covid-on-the-Web dataset.Rmd └── R-notebook-with-query-examples-for-Covid-on-the-Web-dataset.pdf └── src ├── README.md ├── acta ├── README.md ├── data_processors.py ├── entity_linking.py ├── models.py ├── pipeline.py ├── preprocessing.py ├── preprocessing_utils.py ├── requirements.txt ├── run_pipeline.sh └── tokenizer.py ├── dump-dbpedia ├── .gitignore ├── query-hierarchy.sparql ├── retrieve-hierarchy.sh └── retrieve-uris.sh ├── dump-wikidata ├── .gitignore ├── namespaces.ttl ├── query-hierarchy.sparql ├── retrieve-hierarchy.sh └── retrieve-uris.sh ├── env.sh ├── mongo ├── .gitignore ├── README.md ├── filter-acta.js ├── import-cord19.sh ├── import-tools.sh ├── lighten_cord19json.js ├── lighten_entityfishing_abstract.js ├── lighten_entityfishing_body.js ├── lighten_spotlight.js └── metadata_fix.sh ├── ner ├── README.md ├── cord19_ner │ ├── script │ │ ├── __init__.py │ │ └── main_threading.py │ ├── utils │ │ ├── __init__.py │ │ ├── config.py │ │ ├── converter.py │ │ └── iodata.py │ └── wrapper │ │ ├── __init__.py │ │ └── wrapper_annotator.py ├── setup.py └── spotlight_launcher.sh ├── virtuoso ├── .gitignore ├── README.md ├── import-covidontheweb.sh └── virtuoso-import.sh └── xR2RML ├── .gitignore ├── README.md ├── log4j.properties ├── morph-xr2rml-dist-1.3-SNAPSHOT-jar-with-dependencies.jar ├── run_xr2rml_acta.sh ├── run_xr2rml_all.sh ├── 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